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The portal site for the Funtional RNA Project

This site hosts databases and bioinformatics tools developed by the bioinformatics group of the Functional RNA Project which is funded by New Energy and Industrial Technology Development Organization since 2005.

Databases

Ver. 3.0
Ver. 3.0
Project Specific Custom Tracks
Table of custom tracks added by the functional RNA project.
RNA Bibliography
hosts a collection of journal articles related to RNAs.

Bioinformatics tools

software.ncrna.org
Our bioinformatics tools for RNA sequence analysis with web servers and source codes.
CentroidFold
CentroidFold predicts an RNA secondary structure from an RNA sequence. FASTA and one-sequence-in-a-line format are accepted for predicting a secondary structure per sequence. It also predicts a consensus secondary structure when a multiple alignment (CLUSTALW format) is given.
Idiographica
Idiographica is a web server for you to create your own idiograms on-demand.

Knowledgebase

Bioinformatics Tools
A classified list of Bioinformatics tools for RNA analysis.
Known ncRNAs
A comprehensive list of GenomeBrowser views for known ncRNAs in human genome.
Paper Review
Bioinformatics group of the Functional RNA Project have meeting on every Friday for reviewing journal papers related to RNA, Bioinformatics, machine learning and so on. Here we let some our handouts (usually written in Japanese) open for access.

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