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Bioinformatics Tools and Databases for Functional RNA Analysis

ncRNA.org is the portal site for bioinformatics tools and databases spcialized for functional RNAs. The developments in this cite were partially supported by "The Functional RNA Project" funded by New Energy and Industrial Technology Development Organization (NEDO), Japan.

Now Available!

Results of various analysis on RNA secondary structures in one page!
Rtools

Accurate prediction of RNA secondary structure

Prediction of RNA secondary structure by using homologous sequences

Active Work Flow is available for RNA sequence/structure analysis.
You can download the Knime platform and the Active Work Flow for RNA structure predictions.

Databases

Ver. 3.4
Ver. 3.0
Project Specific Custom Tracks
Table of custom tracks added by the functional RNA project.
The Contents of Genomes
The Contents of Genomes presents major components of a genome at a glance.
RNA Bibliography
RNA Bibliography hosts a collection of journal articles related to RNAs.

Bioinformatics tools

CentroidFold
CentroidFold predicts an RNA secondary structure from an RNA sequence.
software
Our bioinformatics tools for RNA sequence analysis with web servers and source codes.
Idiographica
Idiographica is a web server for you to create your own idiograms on-demand.

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