# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln1.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln1.fa

X05053.1/3-118  CCUGGCGGCCAUGGCGAACCGGAACCACCCGAUCCCAUCUCGAACUCGGAAGUGAAAC
M36159.1/2-116  .CAGGUGGUGAUGGCGGAAAGGUCACACCCGAACACAUCCCGAACUCGGAAGUUAAGC
Z50737.1/3-119  AACGGCGGUCAUAGCGGUGGGGAAACGCCCGGUCCCAUCCCGAACCCGGAAGCUAAGC
X02631.1/2-115  GCUGGCGACCAUAGCAAGAGUGAACCACCUGAUCCCUUCCCGAACUCAGAAGUGAAAC
Z50057.1/2-118  GUCGGUGGUCAUUGCGGAGGGGGAACGCCCGGUCCCAUCCCGAACCCGGAAGCUAAGC
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>....>

X05053.1/3-118  GGUUCAGCGCCGAUGA.UAGUGUG..GGGCCUCCCCAUGUGAAAGUAGGUCACUGCCA
M36159.1/2-116  UUUCCAGCGCCGAUG.GUAGUUGG..GGGUUUCCCCCUGCGAGAGUAGGACGUUGCCG
Z50737.1/3-119  CCACCAGCGCCGAUG.GUACUGCACUC.GUGAGGGUGUGGGAGAGUAGGACGCCGCCG
X02631.1/2-115  CUCUUCGCGCUGAUG.GUAGUGNGG.GU..UA.CCCAUGUGAGAGUAAGUCAUCGCCA
Z50057.1/2-118  CCUCCAGCGCCGAUG.GUACUGCACUC.GCCAGGGUGUGGGAGAGUAGGUCGCCGCCG
#=GC SS_cons    >>>>..>><<<.<<...<.<<.....<<....>>.....>>.>.>>.>>>.>>>>>>>

X05053.1/3-118  GGC
M36159.1/2-116  GGC
Z50737.1/3-119  GAC
X02631.1/2-115  GCU
Z50057.1/2-118  ACA
#=GC SS_cons    >>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln2.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln2.fa

M76579.1/4-118        CCUGGUGGCCAUUGCGAGGGCCCUACACCCGAUCCCUUCCCGAACUCGGCCG
AF114035.1/6057-6173  UUCGGUGGUCAUAGCGUGAGGGAAACGCCCGGUUACAUUCCGAACCCGGAAG
X02250.1/3-118        UCUGGUGAUAAUAGCAUUGUGGAACCACCUGAUCCCAUCCCGAACUCAGAAG
X02237.1/3-118        CCUGGCGACCAUAGUGUUUUGGACCCACCUGAUUCCAUUCCGAACUCAGAAG
M76388.1/6142-6258    UUCGGUGGUCAUUGCGUUAGGGAAACGCCCGGUUACAUUCCGAACCCGGAAG
#=GC SS_cons          <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>

M76579.1/4-118        UGAAAUCCCUCAGCGCCUAUGA.UACUGCACCUC.AA.GGUGCGGAAAAGUC
AF114035.1/6057-6173  CUAAGCCUCAGAGCGCCGAUG.GUACUGCAGGGGGGACCCUGUGGGAGAGUA
X02250.1/3-118        UGAAACGCAAUUGCGCCGAUG.GUAGUGUG.GGGUCUCCCCAUGUGAGAGUA
X02237.1/3-118        UGAAACGAAACAGCGUCGAUG.GUAGUGUG.GGGUUUCCCCAUGUGAGAGUA
M76388.1/6142-6258    CUAAGCCUUUCAGCGCCGAUG.GUACUUCAGGGGGGACCCUGUGGGAGAGUA
#=GC SS_cons          >....>>>>>..>><<<.<<...<.<<....<<....>>.....>>.>.>>.

M76579.1/4-118        GGUCGCCGCCAGGU
AF114035.1/6057-6173  GGACGCCGCCGAAC
X02250.1/3-118        GGUCAUUGCCAGGC
X02237.1/3-118        GAACAUCGCCAGGC
M76388.1/6142-6258    GGACGCCGCCGAAC
#=GC SS_cons          >>>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln3.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln3.fa

M35566.1/3-117        CCUGACGACCACAGCGACUGUGAAC.CACCCGACCCCAUCUCGAACUCGGUA
X03902.1/1-114        .CUGGUGGCCUGAGCGGUGUGCCCAGAACCCGAUCCCAUCUCGAACUCGGCC
U18089.1/3485-3600    UCUGGCGGCCAUAGCGCAGUGGAAC.CACCCCUUCCCAUCUCGAACAGGACC
AF116561.1/5902-6018  UUCGGUGGUUAUAGCGGUGGGGAAA.CACCCGGUCCCAUUCCGAACCCGGUA
M16171.1/3-119        UCCGGUGGUGAUAGCGAGAGGGAAA.CGCCCGGUGAGAUUCCGAACCCGGAA
#=GC SS_cons          <<<<<<<<<....<<.<<<<<...<.<..<<<<<<.......>>..>>>>..

M35566.1/3-117        GUGAAACCAGUCAGCGCCGAUGA.UAGUGUGG.CA.UAU.GCCAUGUGAAAG
X03902.1/1-114        GUUAAACACACCAGCGCCCAUG.GUACUGUG.UCUC.AA.GACACGGGAGAG
U18089.1/3485-3600    GUGAAACGCUGCAGCGCCUAUGA.UAGUUGA..GGGUCUCCCUCCGCGAAAG
AF116561.1/5902-6018  GUUAAGCCCGCCAGCGCCGAUG.GUACUGCACU.GGUGACGGUGUGGGAGAG
M16171.1/3-119        GCUAAGCCUCUCAGCGCCGAUG.GUACUGCAA.GGGGGACCUUGUGGGAGAG
#=GC SS_cons          >>....>>>>>..>><<<.<<...<.<<.....<<....>>.....>>.>.>

M35566.1/3-117        UAGGUCAUCGUCAGGC
X03902.1/1-114        UCGGU.GCCGCCAGGC
U18089.1/3485-3600    UCGGUCACCGCCAGAC
AF116561.1/5902-6018  UAGGUCGCCGCCGGAC
M16171.1/3-119        UAGGACGCCGCCGGAC
#=GC SS_cons          >.>>>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln4.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln4.fa

M35310.1/1-117  UCCGGUGGCAAUGUCGGAGGGGUCCCACCCGUUCCCAUCCCGAACACGGAAGUUAAGC
X13005.1/1-116  UCCAGUGAUGAUGGCAAAGAGGCCACACCCGUUCCCAUGCCGAACACGGAAGUUAAGC
X05516.1/3-119  UACGGCGGUCAUAGCGAAGGGGAAACGCCCGGUCCCAUACCGAACCCGGAAGCUAAGC
X01557.1/3-118  CUUGACGACCAUAGAGCAUUGGAACCACCUGAUCCCAUCCCGAACUCAGUAGUGAAAC
X01501.1/2-116  UCUGGUGGCCAAAGCACGAGCAAAACACCCGAUCCCAUCCCGAACUCGGCCGUUAAGU
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>....>

M35310.1/1-117  CCUCCAGAGCCGAUGGUACUCCGC.GGGGAACCGCGCGGGAGAGUAGGUCGCUGCCGG
X13005.1/1-116  UCUUUUGCGCCGAUGGUAGUUGG..GGGUUUCCCCCUGUGAGAGUAGGACGUCGCUGG
X05516.1/3-119  CCUUCAGCGCCGAUGGUACUGCCCU.GAAGACGGGGUGGGAGAGUAGGACGCCGCCGG
X01557.1/3-118  GAUGCAUCGCCGAUGGUAGUGUG..GGGUUUCCCCAUGUGAGAGUAGGUCAUCGUCAA
X01501.1/2-116  GCCGUAGCGCCAAUGGUACUGCG.UCA.AAA.GACGUGGGAGAGUAGGUCACCGCCAG
#=GC SS_cons    >>>>..>><<<.<<..<.<<.....<<....>>.....>>.>.>>.>>>.>>>>>>>>

M35310.1/1-117  AU
X13005.1/1-116  GC
X05516.1/3-119  AC
X01557.1/3-118  GA
X01501.1/2-116  AC
#=GC SS_cons    >.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln5.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln5.fa

X06576.1/4-117  CCUGGUGGCUAUGCCGGGGGUUACCCACCCGAUCCCAUUCCGAACUCGGUCGUUAAGU
K02683.1/2-118  UUCGGUGGUCAUAGCGUGGGGGAAACGCCCGGUCCCAUGCCGAACCCGGUAGCUAAGN
X13006.1/1-116  UCCAGUGAUGAUGGCAAAGAGGCCACACCCGUUCCCAUCCCGAACACGGCAGUUAAGC
M16172.1/3-119  UACGGCGGUCAUAGCGAAGGGGAAACGCCCGGUCCCAUUCCGAACCCGGAAGCUAAGC
M11540.1/3-116  UCUGACGACCAUAGCAGAGUGGAACCACCCCUUCCCAUCCCGAACAGGACGGUGAAAC
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>....>

X06576.1/4-117  CCCCCUGGGCCAAUG..GUACUUCG.UCUC.AA.GGCGCGGGAGAGUAGGUCGCCGCC
K02683.1/2-118  CCCACAGCGCUGAUG..GUACUGCAC.UCGGUAGGGUGUGGGAGAGUAAGUCACCGCC
X13006.1/1-116  UCUUUUGCGCCGAUG..GUAGUUGG..GGGUUUCCCCCUGUGAGAGUAGGACGUCGCU
M16172.1/3-119  CCUUCAGCGCCGAUG..GUACUGCACUC.GCCAGGGUGUGGGAGAGUAGGACGCCGCC
M11540.1/3-116  GCUCCCGCGCC.AAUGA.UAGUAGG..CACCUCG..CCUGUGAAAGUAGGUCAUCGUC
#=GC SS_cons    >>>>..>><<<.<<....<.<<.....<<....>>.....>>.>.>>.>>>.>>>>>>

X06576.1/4-117  AGG.
K02683.1/2-118  GGAA
X13006.1/1-116  GGGC
M16172.1/3-119  GGAC
M11540.1/3-116  AGAC
#=GC SS_cons    >>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln6.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln6.fa

L37450.1/2-118        .GCCUUGGUCACAUGUGCCCCUGGUACC.CACGCGAUCCCAUCUCGAACUCG
X02250.1/3-118        UCUGGUGAUAAUA...GCAUUGUGGAAC.CACCUGAUCCCAUCCCGAACUCA
AF134704.1/5562-5676  CUUGACGACCAUA...GAGCAUUGGAAC.CACCUGAUCCCAUCCCGAACUCA
X03902.1/1-114        .CUGGUGGCCUGA...GCGGUGUGCCCAGAACCCGAUCCCAUCUCGAACUCG
M11545.1/4-118        CCUGGUGGCCAUU...GCGGGGAGCCUG.CACCCGAUCCCAUCCCGAACUCG
#=GC SS_cons          <<<<<<<<<.......<<.<<<<<...<.<..<<<<<<.......>>..>>>

L37450.1/2-118        GCCGUGAAACCAGGUAGCGCCGAUGGUACUGCCG.CU.UAA..GCGCCGGAA
X02250.1/3-118        GAAGUGAAACGCAAUUGCGCCGAUGGUAGUGUG..GGGUCUCCCCAUGUGAG
AF134704.1/5562-5676  GCAGUGAAACGAUGCAUCGCCGAUGGUAGUGUG..GGGUUUCCCCAUGUGAG
X03902.1/1-114        GCCGUUAAACACACCAGCGCCCAUGGUACUGUG.UCUC.AA.GACACGGGAG
M11545.1/4-118        GCCGUGAAAAUCCCCAGCGCCCAUGGUACUGUGC.CUC.AA.GGCACGGGAG
#=GC SS_cons          >..>>....>>>>>..>><<<.<<..<.<<.....<<....>>.....>>.>

L37450.1/2-118        GAGUAGGGU.GCCGCCAAGG
X02250.1/3-118        .AGUAGG.UCAUUGCCAGGC
AF134704.1/5562-5676  .AGUAGG.UCAUCGUCAAG.
X03902.1/1-114        .AGUCGG.U.GCCGCCAGGC
M11545.1/4-118        .AGUAGG.UCGCCGCCAGGU
#=GC SS_cons          ..>>.>>.>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln7.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln7.fa

X03903.1/4-117  CCUGGUGGUUCUAGCGAGGAGCCUGAACCCGUUCCCAUCCCGAACACGGCCGUUAAAC
Z50060.1/3-119  UUCGGUGGUUAUGGCGGUAGGGAAACGCCCGGUCCCAUUCCGAACCCGGAAGCUAAGC
X02028.1/1-117  UCUGGUGAUGAUGGCGGAGGGGACACACCCGUUCCCAUACCGAACACGGCCGUUAAGC
Z11824.1/3-116  U..GGUGGCGAUGGCGAGAAGGUCACACCCGUUCCCAUGCCGAACACGGAGGUUAAGC
L37445.1/4-118  UUGGCUGGUAUAGGCGUCUGAACCGAACCCGAUCCCAUCUCGAACUCGGCCGGUAAAU
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>....>

X03903.1/4-117  UCCUCAGCGCCAAUGGUACUCCG.UCUC.AA.GACGCGGGAG.AGUAGGU.GCCGCCA
Z50060.1/3-119  CUGCCAGCGCCGAUGGUACUGCACCC.CCGCGGGUGUGGGAG.AGUAGGACACCGCCG
X02028.1/1-117  CCUCCAGCGCCAAUGGUACUUGC.UCCGCAGGGAGCCGGGAG.AGUAGGACGUCGCCA
Z11824.1/3-116  UUCUCAGCGCCGAUGGUAGUUGGG.GCAU.UGCCCCUGCGAG.AGUAGGACGCUGCCA
L37445.1/4-118  CAGACAGCGCCGAUGGUACUAACG.CU.GAA..GCGUUGGAAGAGUAGGUCGUUGUCC
#=GC SS_cons    >>>>..>><<<.<<..<.<<.....<<....>>.....>>.>..>>.>>>.>>>>>>>

X03903.1/4-117  GGC
Z50060.1/3-119  AAC
X02028.1/1-117  GGC
Z11824.1/3-116  GGC
L37445.1/4-118  AAG
#=GC SS_cons    >>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln8.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln8.fa

M11544.1/4-118  CCUGGUGGCCAUUGCGAGGAGCCUG.AACCCGAUCCCAUCCCGAACUCGGCCGUUAAA
M36159.1/2-116  .CAGGUGGUGAUGGCGGAAAGGUCA.CACCCGAACACAUCCCGAACUCGGAAGUUAAG
X03902.1/1-114  .CUGGUGGCCUGAGCGGUGUGCCCAGAACCCGAUCCCAUCUCGAACUCGGCCGUUAAA
M11716.1/2-115  UUUGGCGGCCAUAGCGUCUUGGACC.CACCCCUUCCCAUCCCGAACAGGGACGUGAAA
X02239.1/3-118  CCUGGCGACCAUAGCGUUUUGGAUC.CACCUGACUCCAUUCCGAACUCAGAAGUGAAA
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<.<..<<<<<<.......>>..>>>>..>>....

M11544.1/4-118  CUCCUCAGCGCCGAUG.GUACUAUGUCU.UAA.GACCUGGGAGAGUAGGUCGCUGCCA
M36159.1/2-116  CUUUCCAGCGCCGAUG.GUAGUUGG.GGGUUUCCCCCUGCGAGAGUAGGACGUUGCCG
X03902.1/1-114  CACACCAGCGCCCAUG.GUACUGUGUCUC.AA.GACACGGGAGAGUCGGU.GCCGCCA
M11716.1/2-115  CGAGACAGCGCCGAUGA.UAGUGUG.GA.UUA.CCCAUGCGAAAGUAGGUCACCGCCA
X02239.1/3-118  CGAAAUAGCGUCGAUG.GUAGUGUG.GGGUUUCCCCAUGUGAGAGUAGAACAUCGCCA
#=GC SS_cons    >>>>>..>><<<.<<...<.<<....<<....>>.....>>.>.>>.>>>.>>>>>>>

M11544.1/4-118  GGC
M36159.1/2-116  GGC
X03902.1/1-114  GGC
M11716.1/2-115  GAC
X02239.1/3-118  GGC
#=GC SS_cons    >>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln9.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln9.fa

Z50076.1/4-120        GUCGGUGGCGACAGCGGGGAGGGUCCGCCCGGUCCCAUACCGAACCCGGAAG
X52303.1/2-118        UCCGGUGGUGAUAUCAAGAAGGCUACACCCGAUCCCAUACCGAACUCGGAAG
AB035926.1/5989-6104  CCUGGCGGCCUUAGCGCGGUGGUCCCACCUGACCCCAUGCCGAACUCAGAAG
X13007.1/1-116        UUUAGUAACGAUAGCGAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAG
K02683.1/2-118        UUCGGUGGUCAUAGCGUGGGGGAAACGCCCGGUCCCAUGCCGAACCCGGUAG
#=GC SS_cons          <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>

Z50076.1/4-120        CUAAGCUCCCCAGCGCCGAUGGUACUGCACCCGGUGGGGUGUGGGAGAGUAG
X52303.1/2-118        UUAAGCUUCUUGGAGCCGAUGGUACUGCCAGGGCAACCUGGUGGGAGAGUAG
AB035926.1/5989-6104  UGAAACGCCGUAGCGCCGAUGGUAGUGUG.GGGUCUCCCCAUGCGAGAGUAG
X13007.1/1-116        UUAAGCUCUUCAGCGCUGAUGGUAGUUGG.GGGUUUCCCCCUGUGAGAGUAA
K02683.1/2-118        CUAAGNCCCACAGCGCUGAUGGUACUGCACUCGGUAGGGUGUGGGAGAGUAA
#=GC SS_cons          >....>>>>>..>><<<.<<..<.<<....<<....>>.....>>.>.>>.>

Z50076.1/4-120        G.ACACCGCCGACA
X52303.1/2-118        G.ACGCCGCCGGGA
AB035926.1/5989-6104  GG.AACUGCCAGGC
X13007.1/1-116        G.ACGUUGCUAGGC
K02683.1/2-118        G.UCACCGCCGGAA
#=GC SS_cons          >.>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln10.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln10.fa

AF116561.1/5902-6018  UUCGGUGGUUAUAGCGGUGGGGAAACACCCGGUCCCAUUCCGAACCCGGUAG
AJ131591.1/3-116      CCUGAUGACCAUAGCGAGUCGGUSCCACCCCUUCCCAUCCCGAACAGGACCG
X02255.1/3-118        CUUGGCGACCAUAGCGUUAUGGACCCACCUGAUCCCAUGCCGAACUCAGUAG
AJ131583.1/3-115      CCUGAUGACCAUAGCAAGUUGGUCCCACUCCUUCCCAUCCCGAACAGGACAG
M16169.1/3-119        UUCGGCGGCCAUAGCGAGAGGGAAACGCCCGGUUAUAUUCCGAACCCGGAAG
#=GC SS_cons          <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>

AF116561.1/5902-6018  UUAAGCCCGCCAGCGCCGAUG..GUACUGCACU.GGUGACGGUGUGGGAGAG
AJ131591.1/3-116      UGAAACGACUCCACGCC.AAUGA.UAGUGCGG.AU.UGC..CCGUGUGAAAG
X02255.1/3-118        UGAAACGUAAUAGCGCCGAUG..GUAGUGUG..GGGUCUCCCCAUGUGAGAG
AJ131583.1/3-115      UGAAACGACUUUGCGCCGAUGA..UAGUGC...GGGU.UCC.CGUGUGAAAG
M16169.1/3-119        CUAAGACUCUCUGCGCCGAUG..GUACUGCAG.GGGGGACCCUGUGGGAGAG
#=GC SS_cons          >....>>>>>..>><<<.<<....<.<<.....<<....>>.....>>.>.>

AF116561.1/5902-6018  UAGGUCGCCGCCGGAC
AJ131591.1/3-116      UAGGUAAUCGUCAGGC
X02255.1/3-118        UAGGACAUCGCCAGGC
AJ131583.1/3-115      UAGGUCAUCGUCAGGC
M16169.1/3-119        UAGGACACCGCCGGAC
#=GC SS_cons          >.>>>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln11.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln11.fa

X02235.1/3-118      CCUGGCGACCAUAGUGUUUU.GGACCCACCUGAUUCCAUUCCGAACUCAGAAGU
Z50077.1/4-121      GUCGGUGGUUUUAGCGGAGCGGGGAACGCCCGGUCCCAUUCCGAACCCGGAAGC
L12404.1/3-117      CUUGGUGGUUAUGGCGGAGC.GAACGCACCCGAUCCCAUCCCGAACUCGGCCGU
U28505.1/6807-6921  CCUGGUGGUCAUGGCGGGGC.GGCCGCACCCGUUCCCAUUCCGAACACGGCCGU
X55268.1/3-119      UUCGGUGGUCAUAGCGUUAG.GGAAACGCCCGGUUACAUUCCGAACCCGGAAGC
#=GC SS_cons        <<<<<<<<<....<<.<<<<.<...<<..<<<<<<.......>>..>>>>..>>

X02235.1/3-118      GAAACGAAAUAGCGCCGAUGGUAGUGUG..GGGUUUCCCCAUGUGAGAGUAGGA
Z50077.1/4-121      UAAGCCCUCCAGCGCCGAUGGUACUGCACUC.GAUAGGGUGUGGGAGAGUAGGA
L12404.1/3-117      GAAACGUUCCAGCGCUGAUGGUACUUUGC.CUC.AA.GGCACGGCAGAGUAAGU
U28505.1/6807-6921  GAAACGCCCCUGCGCCAAUGGUACUUCG.UCU.UAA.GACGCGGGAGAGUAGGU
X55268.1/3-119      UAAGCCUUUCAGCGCCGAUGGUACUGCAG.GGGGGACCCUGUGGGAGAGUAGGA
#=GC SS_cons        ....>>>>>..>><<<.<<..<.<<.....<<....>>.....>>.>.>>.>>>

X02235.1/3-118      CAUCGCCAGGC
Z50077.1/4-121      CACCGCCGACA
L12404.1/3-117      CGUUGCCAGGU
U28505.1/6807-6921  CGCUGCCAGGU
X55268.1/3-119      CGCCGCCGAGC
#=GC SS_cons        .>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln12.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln12.fa

M76576.1/4-118  UCUGAUGACCAUGGCGGGAGCAAAUCACCCGAUCCCAUCCCGAACUCGGCCGUCAAAU
X02028.1/1-117  UCUGGUGAUGAUGGCGGAGGGGACACACCCGUUCCCAUACCGAACACGGCCGUUAAGC
M16171.1/3-119  UCCGGUGGUGAUAGCGAGAGGGAAACGCCCGGUGAGAUUCCGAACCCGGAAGCUAAGC
Z11823.1/1-116  CCUGGUGGCGAUGGCGAGAAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGC
X02260.1/3-117  CUUAGCGACAAUAGUGCUGUAGACCCACCUGAUCCCAUUCCGAACUCAGUAGUGAAAC
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>....>

M76576.1/4-118  GCCCCAGCGCCCAUGA.UACUCUGC.CUC.AA.GGCACGGAAAAGUCGGUCGCCGCCA
X02028.1/1-117  CCUCCAGCGCCAAUG.GUACUUGC.UCCGCAGGGAGCCGGGAGAGUAGGACGUCGCCA
M16171.1/3-119  CUCUCAGCGCCGAUG.GUACUGCAA.GGGGGACCUUGUGGGAGAGUAGGACGCCGCCG
Z11823.1/1-116  UUCUCAGCGCCGAUG.GUAGUUGGG.GCAU.UGCCCCUGCGAGAGUAGGACGUUGCCA
X02260.1/3-117  GCAGUAGCGCCGAUG.GUAGUGUGG.GAGU..UCCCAUGUGAGAGUAGGACAUUGCUA
#=GC SS_cons    >>>>..>><<<.<<...<.<<.....<<....>>.....>>.>.>>.>>>.>>>>>>>

M76576.1/4-118  GAU
X02028.1/1-117  GGC
M16171.1/3-119  GAC
Z11823.1/1-116  GGC
X02260.1/3-117  AGC
#=GC SS_cons    >>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln13.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln13.fa

X01950.1/1-117  UGUUGUGAUGAUGGCAUUGAGGCCACACCUGUUCCCAUACCGAACACAGAAGUUAAGC
M35563.1/5-120  CCUGGUGUCCAUAGAGCACUGGAACCACCUGAUCCCAUCCCGAACUCAGAAGUGAAAC
M59340.1/3-119  UUCGGUGGUCAUAGCGUGAGGGAAACGCCCGGUUACAUUCCGAACCCGGAAGCUAAGC
V01347.1/3-119  UUCGGUGGUCAUAGCGUGAGGGAAACGCCCGGUUACAUUCCGAACCCGGAAGCUAAGC
M11535.1/2-117  CUUGGCGACCAUAGCGGAAUGGAACCACCUGAUCCCAUCUCGAACUCAGAAGUGAAAC
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>....>

X01950.1/1-117  UCAAUAGCACCGA..AAGUAGUUGGAGGAUCUCUUCCUGCGAGGAUAGGACGUCGCGA
M35563.1/5-120  GGUGCAUCGCCGAUG..GUAGUGUG.GGGCCUCCCCAUGUGAGAGUAGGUCAACGCCA
M59340.1/3-119  CUCACAGCGCCGAUG..GUACUGCAGGGGGGACCCUGUGGGAGAGUAGGACACCGCCG
V01347.1/3-119  CUUACAGCGCCGAUG..GUACUGCAGGGGGGACCCUGUGGGAGAGUAGGACGCCGCCG
M11535.1/2-117  GUUCCAGCGCCAAUG..GUAGUGUG.GGGUUUCCCCAUGCGAGAGUAGGUCAUCGCCA
#=GC SS_cons    >>>>..>><<<.<<....<.<<....<<....>>.....>>.>.>>.>>>.>>>>>>>

X01950.1/1-117  UGC
M35563.1/5-120  GGC
M59340.1/3-119  AAC
V01347.1/3-119  AAC
M11535.1/2-117  AGC
#=GC SS_cons    >>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln14.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln14.fa

Z35330.1/6121-6235    CCUGGUGGUUUUAGCGAAGAGCCUCAACCCGAUCCCAUCCCGAACUCGGCCG
S39188.1/3-117        CCUGGUGGCUUUAGCGAAGCGAUCAGACCCGAUCCCAUCCCGAACUCGGCCG
L24488.1/3-117        CUUGGUGGUUAUGGCGGAGUGAAUGCACCCGAUCCCAUCCCGAACUCGGCCG
AF114036.1/6058-6174  UUCGGUGGUCAUAGCGUGAGGGAAACGCCCGGUUACAUUCCGAACCCGGAAG
AJ131600.1/3-115      CCUGGUGACCAUAGCGAGUCGGUACCACCCCUUCCCAUCCCGAACAGGACCG
#=GC SS_cons          <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>

Z35330.1/6121-6235    UUAAACUCUUCAGCGCCAAUG.GUACUAUGG.CU.UAA.GCCCUGGGAGAGU
S39188.1/3-117        UCAAACGCUCCAGCGCCAAUG.GUACUAUG.UCUC.AA.GACCUGGGAGAGU
L24488.1/3-117        UGAAACGCUCCAGCGCUGAUG.GUACUUCGC.CUC.AA.GGCACGGGAGAGU
AF114036.1/6058-6174  CUAAGCCUCAGAGCGCCCAUG.GUACUGCAG.GGGGGACCCUGUGGGAGAGU
AJ131600.1/3-115      UGAAACGACUCCGCGCCGAUGA.UAGUGCG.....GAUUCCCGUGUGAAAGU
#=GC SS_cons          >....>>>>>..>><<<.<<...<.<<.....<<....>>.....>>.>.>>

Z35330.1/6121-6235    AGGUCGCUGCCAGGC
S39188.1/3-117        AGGUCGUCGCCAGGC
L24488.1/3-117        AAGUCGCUGCCAGGU
AF114036.1/6058-6174  AGGACGCCGCCGAAC
AJ131600.1/3-115      AGGUCAUCGUCAGGC
#=GC SS_cons          .>>>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln15.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln15.fa

M33890.1/5-120  .UCGGUGGC.CUAUAGCAGCAGGGA.ACGCCCGGACCCAUUCCGAACCCGGAAGCUAA
Z11821.1/3-116  U..GGUGGC.GAUG.GCGAGAAGGUCACACCCGUUCCCAUGCCGAACACGGAAGUUAA
M34772.1/1-114  .CUGGUGGC.CAUU.GCGAGGAGCCUGAACCCGACUCCACUCCGAACUCGGCCGUUAA
M58416.1/2-116  .CAGGUGGC.GAUG.GCGGAAAGGUCACACCCGAACACAUCCCGAACUCGGAAGUUAA
X55259.1/3-117  UACGGCGGUCAAUA.GCGGCAGGGAAACGCCCGGUCCCAUCCCGAACCCGGAAGCUAA
#=GC SS_cons    <<<<<<<<<......<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>...

M33890.1/5-120  GCCUGCUAACGCUGAUG.GUACUGCAA.CCGGGAGGUUGUGGGAGAGUAAGAAACCGC
Z11821.1/3-116  GCUUCUCAGCGCCGAUG.GUAGUUGGG.GCAU.UGCCCCUGCGAGAGUAGGACGUUGC
M34772.1/1-114  ACUCCUCAGCGCCGAUG.GUACUAUG.UCUC.AA.GACCUGGGAGAGUAGGUCGCUGC
M58416.1/2-116  GCUUUCCAGCGCCGAUG.GUAGUUGG..GGGUUUCCCCCUGCGAGAGUAGGACGCUGC
X55259.1/3-117  GCCUGCCAGCGCCAAUGA.UACUGCCCUC....ACCGGGUGGAAAAGUAGGACACCGC
#=GC SS_cons    .>>>>>..>><<<.<<...<.<<.....<<....>>.....>>.>.>>.>>>.>>>>>

M33890.1/5-120  CGACA
Z11821.1/3-116  CAGGC
M34772.1/1-114  CAGGU
M58416.1/2-116  CGGGC
X55259.1/3-117  CGAAC
#=GC SS_cons    >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln16.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln16.fa

M16533.1/3-118  UCUGGAAACCAUAGCAUUGUGGCCCCACCUGAUC..CCAUCUCGAACUCAGAAGUGAA
X02250.1/3-118  UCUGGUGAUAAUAGCAUUGUGGAACCACCUGAUC..CCAUCCCGAACUCAGAAGUGAA
X03903.1/4-117  CCUGGUGGUUCUAGCGAGGAGCCUGAACCCGUUC..CCAUCCCGAACACGGCCGUUAA
X02030.1/3-120  CUUGGCGACCAUAGCGAUUUGGACCCACCUGAUCUUCCAUUCCGAACUCAGAAGUGAA
X02631.1/2-115  GCUGGCGACCAUAGCAAGAGUGAACCACCUGAUC..CCUUCCCGAACUCAGAAGUGAA
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.........>>..>>>>..>>...

M16533.1/3-118  ACGCAAUCGCGCCGAUGGUAGUGUG..GGGUCUCCCCAUGUGAGAGUAGGUCAUUUCC
X02250.1/3-118  ACGCAAUUGCGCCGAUGGUAGUGUG..GGGUCUCCCCAUGUGAGAGUAGGUCAUUGCC
X03903.1/4-117  ACUCCUCAGCGCCAAUGGUACUCCG.UCUC.AA.GACGCGGGAGAGUAGGU.GCCGCC
X02030.1/3-120  ACGAAUUAGCGCCGAUGGUAGUGUG..GGGCUUCCCCAUGUGAGAGUAGGACAUCGCC
X02631.1/2-115  ACCUCUUCGCGCUGAUGGUAGUGNGG.GU..UA.CCCAUGUGAGAGUAAGUCAUCGCC
#=GC SS_cons    .>>>>>..>><<<.<<..<.<<.....<<....>>.....>>.>.>>.>>>.>>>>>>

M16533.1/3-118  AGGC
X02250.1/3-118  AGGC
X03903.1/4-117  AGGC
X02030.1/3-120  AGGC
X02631.1/2-115  AGCU
#=GC SS_cons    >>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln17.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln17.fa

X55259.1/3-117    UACGGCGGUCAAUAGCGGCAGGGAAACGCCCGGUCCCAUCCCGAACCCGGAAGCUA
X52300.1/5-122    CCCCGUGCC.UUUAGCGCCUCGGAACCACCCCACUCCAUGCCGAACUGGGUCGUGA
M76573.1/4-118    CCUGGUGGC.UAUGGCGGGAGAGAUCCACCCGAUCCCAUCCCGAACUCGGCCGUGA
M33886.1/1-116    UCUGGUGGC.GAUAGCAGAGAGGUCACACCCGUUCCCAUGCCGAACACGGAAGUUA
X61066.1/168-278  UCUGGUGAC.GAUGGCAAGAUG.UUCCACCUGUUCCCUACCCGAAUAUAGAAGUUA
#=GC SS_cons      <<<<<<<<<.....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>..

X55259.1/3-117    AGCCUGCCAGCGCCAAUG.A.UACUGCCCUC....ACCGGGUGGAAAAGUAGGACA
X52300.1/5-122    AACGUGGCAGCGCCUAUGA..UACUUGGA.CCGCAGGGUCCUGGAAAAGUCGGUGC
M76573.1/4-118    AAACCCCCAGCGCCUAUGA..UACUGCGG.CU.UAA.GCCGUGGGAAAGUCGGUCG
M33886.1/1-116    AGUUCUCUAGCGCCGAUG..GUAGUGUGG.ACUU.UGUCCCUGUGAGAGUAGGACG
X61066.1/168-278  AGCAUCUUAGCGCCGACGA..UAGUUAU.U.A..CA..AUUAGCGAAAAUAGGACG
#=GC SS_cons      ..>>>>>..>><<<.<<....<.<<.....<<....>>.....>>.>.>>.>>>.>

X55259.1/3-117    CC.GCCGAAC
X52300.1/5-122    AGUGCGGGGG
M76573.1/4-118    CC.GCCAGGU
M33886.1/1-116    UU.GCCAGGC
X61066.1/168-278  UU.GCCAGGC
#=GC SS_cons      >>.>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln18.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln18.fa

AB035926.1/5989-6104  CCUGGCGGCCUUAGCGCGGUGGUCCCACCUGACCCCAUGCCGAACUCAGAAG
X06577.1/4-117        CCUGGUGGCCCAAGUGAGGGGGCUGCACCCGAUCCCAUCCCGAACUCGGCCG
Z50060.1/3-119        UUCGGUGGUUAUGGCGGUAGGGAAACGCCCGGUCCCAUUCCGAACCCGGAAG
X55255.1/4-120        GUUGGUGGUUAUUGUGUCGGGGGUACGCCCGGUCCCUUUCCGAACCCGGAAG
X04585.1/3-117        UUUGGUGGUCAUAGCGUUGGCUAAACACCCGAUCCCAUCCCGAACUCGGCCG
#=GC SS_cons          <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>

AB035926.1/5989-6104  UGAAACGCCGUAGCGCCGAUGGUAGUGUG..GGGUCUCCCCAUGCGAGAGUA
X06577.1/4-117        UGAAAACCCUCAGCGCCGAUGGUACUGCG.UCU.UAA.GGCGCGGAAGAGUA
Z50060.1/3-119        CUAAGCCUGCCAGCGCCGAUGGUACUGCACCC.CCGCGGGUGUGGGAGAGUA
X55255.1/4-120        CUAAGCCCGAUUGCGCUGAUGGUACUGCAC.CUGGGAGGGUGUGGGAGAGUA
X04585.1/3-117        UUAAGGGCCAACACGCCGAUGGUACUGCG.UCUC.AA.GACGUGGGAGAGUA
#=GC SS_cons          >....>>>>>..>><<<.<<..<.<<.....<<....>>.....>>.>.>>.

AB035926.1/5989-6104  GGG.AACUGCCAGGC
X06577.1/4-117        GG.UCGCCGCCAGG.
Z50060.1/3-119        GG.ACACCGCCGAAC
X55255.1/4-120        GG.UCGCUGCCAACC
X04585.1/3-117        GG.UCACCGCCAAAC
#=GC SS_cons          >>.>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln19.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln19.fa

X15180.1/3-118  UCUGGAAACCAUAGCAUUGUGGCACCACCUGAUCCCAUCCCGAACUCAGAAGUGAAAC
Z11822.1/1-116  CCUGGUGGCGAUGGCGAGAAGGACACACCCGUUCCCAUACCGAACACGGAAGUUAAGC
M76576.1/4-118  UCUGAUGACCAUGGCGGGAGCAAAUCACCCGAUCCCAUCCCGAACUCGGCCGUCAAAU
M10816.1/1-117  CCUAGUGACAAUAGCGGAGAGGAAACACCCGUUCCCAUCCCGAACACGGAAGUUAAGC
X02249.1/3-117  UUUGGUGACCAUAGUGUUGUGGUACCACCUGACUCCAUUCCGAACUCAGUAGUGAAAC
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>....>

X15180.1/3-118  GCAAUUGCGCCGAUG.GUAGUGUG.GGGUCUCCCCAUGUGAGAGUAGGUCAUUUCCAG
Z11822.1/1-116  UUCUCAGCGCCGAUG.GUAGUUGGGGCAU.UGCCCCUGCGAGAGUAGGACGCUGCCAG
M76576.1/4-118  GCCCCAGCGCCCAUGA.UACUCUGCCUC.AA.GGCACGGAAAAGUCGGUCGCCGCCAG
M10816.1/1-117  UCUCCAGCGCCGAUG.GUAGUUGGGGCCAGCGCCCCUGCAAGAGUAGGUCGUUGCUAG
X02249.1/3-117  GUAAUAACGCCGAUG.GUAGUGUG.GGGUUUCCCCAUGUGAGAGUAGGU.AUCGCCAG
#=GC SS_cons    >>>>..>><<<.<<...<.<<....<<....>>.....>>.>.>>.>>>.>>>>>>>>

X15180.1/3-118  GC
Z11822.1/1-116  GC
M76576.1/4-118  AU
M10816.1/1-117  GC
X02249.1/3-117  GC
#=GC SS_cons    >.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln20.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln20.fa

X02713.1/1-117    UGUUGUGAUGAUGGCAUUGAGGUCACACCUGUUCCCAUACCGAACACAGAAGUUAA
AJ131600.1/3-115  CCUGGUGACCAUAGCGAGUCGGUACCACCCCUUCCCAUCCCGAACAGGACCGUGAA
Z11824.1/3-116    U..GGUGGCGAUGGCGAGAAGGUCACACCCGUUCCCAUGCCGAACACGGAGGUUAA
X05057.1/3-119    UACGGCGGUCAUAGCGAAGGGGAAACGCCCGGUCCCAUUCCGAACCCGGAAGCUAA
D13615.1/3-119    UUCGGUGGUUUUGGCGAGGGGGAAACACCCGGUCCCAUUCCGAACCCGGAAGUUAA
#=GC SS_cons      <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>...

X02713.1/1-117    GCUCAAUAGCGCCGA..AAGUAGUUGGA.GGAUCUCUUCCUGCGAGGAUAGGACGU
AJ131600.1/3-115  ACGACUCCGCGCCGAUGA..UAGUGCG.....GAUUCCCGUGUGAAAGUAGGUCAU
Z11824.1/3-116    GCUUCUCAGCGCCGAUG..GUAGUUGGG.GCAU.UGCCCCUGCGAGAGUAGGACGC
X05057.1/3-119    GCCCUUCAGCGCCGAUG..GUACUGCACUC.GACAGGGUGUGGGAGAGUAGGACAC
D13615.1/3-119    GCCUCUCAGCGCCGAUG..GUACUGCA.UGGGAGACUGUGUGGGAGAGUAGGACAC
#=GC SS_cons      .>>>>>..>><<<.<<....<.<<.....<<....>>.....>>.>.>>.>>>.>>

X02713.1/1-117    CGCAAUGC
AJ131600.1/3-115  CGUCAGGC
Z11824.1/3-116    UGCCAGGC
X05057.1/3-119    CGCCGGAC
D13615.1/3-119    CGCCGGAC
#=GC SS_cons      >>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln21.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln21.fa

M16205.1/4-122  UGCGGUGGUGAUAGUGGUGGGGAAACGCCCGGUUAACCGUUCCGAUCCCGGUAGCUAA
D13621.1/3-119  UUCGGUGGUGUUGGCGGAGGGGAAACGCCCGGUC..CCACAUCGAACCCGGAAGCUAA
X55264.1/4-122  UGCGGUGGUGAUAGUGGUGGGGAAACGCCCGGUUAACCGUUCCGAUCCCGGUAGCUAA
X55267.1/3-119  UACGGCGGCCAUAGCGGAGGGGAAACGCCCGGUC..CCAUUCCGAACCCGGAAGCUAA
K02682.1/2-118  UCUGGCGGCCAUAGCGUGGGGGAAACGCCCGGUC..CCAUCCCGAACCCGGAAGCUAA
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.........>>..>>>>..>>...

M16205.1/4-122  GCCCAUUCGCGCUGAUGGUACUGCAA.CUUGGUGGUUGUGGGAGAGUAAGUGACUGCC
D13621.1/3-119  GCCCUCCUGCGCCGAUGGUACUGCACUC.GUGAGGGUGUGGGAGAGUAGGACGCUGCC
X55264.1/4-122  GCCCAUGUAUGCUGAUGGUACUGCAA.CUUGGUGGUUGUGGGAGAGUAAGUGACUGCC
X55267.1/3-119  GCCCUCCAGCGCCGAUGGUACUGCACCC.GAGAGAGUGUGGGAGAGUAGGACGCCGCC
K02682.1/2-118  GCCCCAUAGCGCCGAUGGUACUGCAA.CCGGGAGGUUGUGGGAGAGUAGGUCGCCGCC
#=GC SS_cons    .>>>>>..>><<<.<<..<.<<.....<<....>>.....>>.>.>>.>>>.>>>>>>

M16205.1/4-122  GCAA
D13621.1/3-119  GAAC
X55264.1/4-122  GCAA
X55267.1/3-119  GGAC
K02682.1/2-118  GGAC
#=GC SS_cons    >>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln22.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln22.fa

X00475.1/121-239  GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAG
J01012.1/1-119    GCCUACGGCCACACCACCCUGAAAGUGCCCGAUCUCGUCUGAUCUCGGAAGCGAUC
X00575.1/1-121    AUCCACGGCCAUAGGACACAGAAAACAUCGCAUCCCGUCCGAUCUGCGCAAUCAAG
X57691.1/1-116    .C.UACGACUAUAUGACGUUGAAUAUACCCGUUCUCGUCUGAUUACGGAAGUUAAG
M10850.1/361-479  GCCUACGGCCACACCACCCUGAAAGUGCCUGAUCUCGUCUGAUCUCAGAAGCGAUA
#=GC SS_cons      <<<<<<<<<....<<.<<<<<...<<..<<<<<<......>>..>>>>..>>....

X00475.1/121-239  CGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAG...U
J01012.1/1-119    CAGGGCCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCGGG...U
X00575.1/1-121    CUGUGUACCGCCCAGUCAGUACCGGAGUGGGGGACCAUCCGGGAAUCCUGCCAGGU
X57691.1/1-116    UAACGUCGAGUGGGGUUAGUACUUAGAUGGGUGACCGCUUGGGAAUACCUCA...U
M10850.1/361-479  CAGGGUCGGGCCUGGUUAGUACCUGGAUGGGAGACCGCCUGGGAAUACCAGG...U
#=GC SS_cons      >>>>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>...>

X00475.1/121-239  GUCGACAGCC
J01012.1/1-119    GUCGUAGGCU
X00575.1/1-121    GCUGUGGUU.
X57691.1/1-116    GCCGUAGGC.
M10850.1/361-479  GUCGUAGGCU
#=GC SS_cons      >>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln23.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln23.fa

X01618.1/1-119  GGAUGCGGUCAUACCAAGGCUACUACACCAGAUCCCAUCAGAACUCUGCAGUUAAGCG
X00994.1/1-119  GCCUACGACCAUACCACGUUGAAAACACCAGUUCUCGUCCGAUCACUGAAGUUAAGCA
X01550.1/1-119  GAUAGCGUCCAUACCACACUGAAAACACCGGUUCUCGUCCGAUCACCGCAGUUAAGCA
M10436.1/2-120  UGGUGCGGUCAUACCACCGUUAAUGCACCGGAUCCCGUCGGAACUCCGUAGUUAAGCG
J01851.1/1-119  GUUGUCGGCCAUACUAUGCCUAACGCACCAGAUCCCAUCCGAACUCUGAAGUUAAGCG
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<......>>..>>>>..>>....>>

X01618.1/1-119  CCUUUGGGCCGGAAUAGUACUGGGAUGGGUGACCUCCCGGGAAGUCCCGGUGCUGCAU
X00994.1/1-119  ACGUCGGGCCAGGUUAGUACUUGGAUGGGUGACCGCCUGGGAAUACCUGGUGUUGUAG
X01550.1/1-119  GUGUCGGGCCCAGUUAGUACUUGGAUGGGUGACCGCCUGGGAAUACUGGGUGUCGCUA
M10436.1/2-120  CGCUUGGGCCGGAAUAGUACUGGGAUGGGUGACCUCCCGGGAAGUCCCGGUGCCGCGC
J01851.1/1-119  GCAUAAGGCGAGGUUAGUACUUGGGUGGGGGACCGCCAGGGAAGCCCUCGUGCUGACA
#=GC SS_cons    >>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>>>>>>>>>

X01618.1/1-119  CCA
X00994.1/1-119  GCU
X01550.1/1-119  CCU
M10436.1/2-120  CCA
J01851.1/1-119  GCU
#=GC SS_cons    >>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln24.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln24.fa

X05233.1/1-119      GUCUACGGCCAUACCACCGGGAAAAUACCGGUUCUCGUCCGAUCACCGAAGUCA
X06836.1/1-119      GCCUACGGCCAUACCACGUAGAAUGCACCGGUUCUCGUCCGAUCACCGAAGUUA
X06837.1/1-119      GUCUACGGCCAUACCACCGGGAAAAAACCGGUUCUCGUCCGAUCACCGAAGUCA
X01003.1/1-119      GUUUACGACCAUACUACGUUGAAUACACCGGUUCUCGUCCGAUCACCGAAGUUA
AF072692.1/240-358  AGGUGCGAUCAUACCAGCACUAAUGCACCGGAUCCCAUCAGAACUCCGCAGUUA
#=GC SS_cons        <<<<<<<<<....<<.<<<<<...<<..<<<<<<......>>..>>>>..>>..

X05233.1/1-119      AGCCCGGUAGGGCCAGGUUAGUACUUGGAUGGGUGACCGCCUGGGAAUACCUGG
X06836.1/1-119      AGCUGCGUCGGGCGUGGUUAGUACUUGCAUGGGAGACCGGCUGGGAAUACCACG
X06837.1/1-119      AGCCCGGUAGGGCCAGGUUAGUACUUGGAUGGGUGACCGCCUGGGAAUACCUGG
X01003.1/1-119      AGCAACGUCGGGCUUGGUUAGUACUUGGAUGGGAGACCGCCUGGGAAUACCAGG
AF072692.1/240-358  AGCGUGCUUGGGCGAGAGUAGUACUAGGAUGGGUGACCUCCUGGGAAGUCCUUG
#=GC SS_cons        ..>>>>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>

X05233.1/1-119      UGCUGUAGACU
X06836.1/1-119      UGCUGUAGGCU
X06837.1/1-119      UGCUGUAGACU
X01003.1/1-119      UGUCGUAGGCU
AF072692.1/240-358  UGUUGCACCUC
#=GC SS_cons        >>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln25.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln25.fa

X01518.1/1-119  GGCAACGACCAUACCACGUUGAAUACACCAGUUCUCGUCCGAUCACUGAAGUUAAGCA
K02350.1/1-119  GUCUACGACCAUACCACAAUGAACACACCGGUUCUCGUCCGAUCACCGAAGUUAAGCA
X00022.1/1-119  GGCAACGACCAUACCAUGCUGAAAAUACCAGUUCCCGUCCGAUCACUGAAGUCAAGCA
X05234.1/1-119  GCUUACGGCCAUAUCACGCUGAAAACACCGGUUCUCGUCCGAACACCGAAGUUAAGCA
V00647.1/1-119  GCUUACGGCCAUACCACCCUGAGCACGCCCGAUCUCGUCCGAUCUCGGAAGCUAAGCA
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<......>>..>>>>..>>....>>

X01518.1/1-119  ACGUCGGGCGUAGUUAGUACUUGGAUGGGUGACCGCUUGGGAACACUACGUGCCGUUG
K02350.1/1-119  UUGUCGGGCCAGGAUAGUACCUGGAUGGGGGACCGCCUGGGAACGCCUGGUGUCGUAG
X00022.1/1-119  GCAUCGGGCCCGGUUAGUACUUGGAUGGGUGACCGCCUGGGAACACCGGGUGUCGUUG
X05234.1/1-119  ACGUAGAGCCUGGUGAGUACUUGGAUGGGUGACCGCUUGGGAAUACCAGGUGCUGUAA
V00647.1/1-119  GGGUCGGGCCUGGUUAGUACUUGGAUGGGAGACUGCCUGGGAAUACCAGGUGUUGUAA
#=GC SS_cons    >>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>>>>>>>>>

X01518.1/1-119  GCA
K02350.1/1-119  ACU
X00022.1/1-119  UCA
X05234.1/1-119  GCA
V00647.1/1-119  GCU
#=GC SS_cons    >>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln26.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln26.fa

M10436.1/2-120  UGGUGCGGUCAUACCACCGUUAAUGCACCGGAUCCCGUCGGAACUCCGUAGUUAAGCG
X01570.1/1-119  AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUUCGAUCUGCGCAGUUAACCA
K02349.1/1-119  GUCUACGGCCAUACCACGAUGAAUACACCGGUUCUCGUCCGAUCACCGAAGUUAAGCA
X05532.1/1-118  AGGAACGGCCAUACCACGUCGAUCGCACCACAUCCCGUCCGCUCUGUGAAGUUAAGCG
X00069.1/1-118  AUCUGCGGCCAUAGAACCGUGAAAAUACCGCAUCCCGUCCGAUCUGCGAAGUCAAGCA
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<......>>..>>>>..>>....>>

M10436.1/2-120  CGCUUGGGCCGGAAUAGUACUGGGAUGGGUGACCUCCCGGGAAGUCCCGGUGCCGCGC
X01570.1/1-119  GAGUGCCGCCCAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGUGG
K02349.1/1-119  UUGUCGGGCCAGGAUAGUACUUGGAUGGGGGACCGCCUGGGAACUCCUGGUGCCGUAG
X05532.1/1-118  GCGUCGGGCCAGGCUAGUACUACGGUGGGGGACCACGUGGGGGACCCUGGUGCUGUUC
X00069.1/1-118  CGGUAUCGCCUAGUCAGUACUGCGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGCAG
#=GC SS_cons    >>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>>>>>>>>>

M10436.1/2-120  CCA
X01570.1/1-119  UUU
K02349.1/1-119  ACU
X05532.1/1-118  CU.
X00069.1/1-118  UU.
#=GC SS_cons    >>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln27.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln27.fa

X55697.1/1-119  GGAUGCGAUCAUACCAGCACUAACGCACCGGAUCCCAUCAGAACUCCGAAGUUAAGCG
M10437.1/2-120  UGGUACGGUCAUACCACGGCUAAUGCGCCCGAUCCCAUCCGAACUCGGAAGCCAAGCG
X00020.1/1-119  GUCUACGACCAUAUCACGUUGAAAACACCGGUUCUCGUCCGAUCACCGAAGUUAAGCA
X06996.1/1-118  GGGUGCGAUCAUACCAGCGUUAAUGCACCGGAUCCCAUCAGAACUCCGCAGUUAAGCG
M18171.1/1-119  GGAUGCGAUCAUACCAGCACUAAAGCACCGGAUCCCAUCAGAACUCCGAAGUUAAGCG
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<......>>..>>>>..>>....>>

X55697.1/1-119  UGCUUGGGCGAGAGUAGUACUAGGAUGGGUGACCCCCUGGGAAGUCCUCGUGUUGCAU
M10437.1/2-120  CCGUUGGGCCGGAAUAGUACUGGGAUGGGUGACCUCCUGGGAAGUCCCGGUGCUGUAC
X00020.1/1-119  ACGUCGAGCGUGGUUAGUACGUGGAUGGGUGACCGCCUCGGAAUACCACGUGUUGUAG
X06996.1/1-118  CGCUUGGGCUAGAGUAGUACUGGGAUGGGUGACCUCCCGGGAAGUCCUAGUGUUGCAC
M18171.1/1-119  UGCUUGGGCGAGAGUAGUACUAGGAUGGGUGACCUCCUGGGAAGUCCUUGUGUUGCAU
#=GC SS_cons    >>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>>>>>>>>>

X55697.1/1-119  CCC
M10437.1/2-120  CUA
X00020.1/1-119  GCU
X06996.1/1-118  CC.
M18171.1/1-119  CCC
#=GC SS_cons    >>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln28.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln28.fa

AF101250.1/1-119  GGGUGCGAUCAUACCAGCACUAAAGCACCGGAUCCCAUCAGAACUCCGAAGUUAAG
X01518.1/1-119    GGCAACGACCAUACCACGUUGAAUACACCAGUUCUCGUCCGAUCACUGAAGUUAAG
X73589.1/1-118    AUCCACGGCCAUAGGACUCCGAAAGCACCGCAUCCCGUCCGAUCUGCGAAGUUAAC
K03160.1/1-118    AUCCACGGCCAUAGGACUCUGAAAGCACUGCAUCCCGUCCGAUCUGCAAAGUUAAC
AJ417699.1/1-119  GCCUACGACCAUACCAUGCUGAAUAUACCGGUUCUCGUCCGAUCACCGAAGUCAAG
#=GC SS_cons      <<<<<<<<<....<<.<<<<<...<<..<<<<<<......>>..>>>>..>>....

AF101250.1/1-119  CGUGCUUGGGCGAGAGUAGUACUAGGAUGGGUGACCUCCUGGGAAGUCCUCGUGUU
X01518.1/1-119    CAACGUCGGGCGUAGUUAGUACUUGGAUGGGUGACCGCUUGGGAACACUACGUGCC
X73589.1/1-118    CGGAGUGCCGCCCAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGUGCU
K03160.1/1-118    CAGAGUACCGCCCAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGUGCU
AJ417699.1/1-119  CAGCAUAGGGCCCGGUUAGUACUUGGAUGGGAGACCGCCUGGGAAUACCGGGUGUU
#=GC SS_cons      >>>>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>>>>>

AF101250.1/1-119  GCACCCC
X01518.1/1-119    GUUGGCA
X73589.1/1-118    GUGGUU.
K03160.1/1-118    GUGGUU.
AJ417699.1/1-119  GUAGGCU
#=GC SS_cons      >>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln29.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln29.fa

X52052.1/4-118  ..GUUCCAUCAUACCAUGCCUACUACGCCGCAUCCCAUCAGAACUGCGAAGCUAAGCG
X01619.1/1-119  GGAUGCGGUCAUACCAAGGCUACUACACCAGAUCCCAUCAGAACUCUGAAGUUAAGCG
X73589.1/1-118  AUCCACGGCCAUAGGACUCCGAAAGCACCGCAUCCCGUCCGAUCUGCGAAGUUAACCG
X00378.1/2-120  UGGUGCGGUCAUACCAGCGCUAAUGCACCGGAUCCCAUCAGAACUCCGAAGUUAAGCG
X00067.1/1-119  AUCUGGGGCCAUACCACAGCCGAAUCACCGCAUCCCGUUCGAUCUGCGCAGUUAAAUG
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<......>>..>>>>..>>....>>

X52052.1/4-118  GCAUUGGGCCAGAAUAGUACUGGGAUGGGUGACCUCCCGGGAAGUCCUGG.UGUGGAA
X01619.1/1-119  CCUUUGGGCCGGAAUAGUACUGGGAUGGGUGACCUCCCGGGAAGUCCCGG.UGCUGCA
X73589.1/1-118  GAGUGCCGCCCAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGG.UGCUGUG
X00378.1/2-120  CGCUUGGGCCAGAACAGUACUGGGAUGGGUGACCUCCCGGGAAGUCCUGG.UGCUGCA
X00067.1/1-119  CUGUAGGGCCGAGUCAGUAGUGCGGUGGGGGACCACGCGCGAAUACUCUGGUGCCCCA
#=GC SS_cons    >>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>.>>>>>>>

X52052.1/4-118  CC..
X01619.1/1-119  UCCA
X73589.1/1-118  GUU.
X00378.1/2-120  CCCU
X00067.1/1-119  GGU.
#=GC SS_cons    >>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln30.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln30.fa

X00069.1/1-118  AUCUGCGGCCAUAGAACCGUGAAAAUACCGCAUCCCGUCCGAUCUGCGAAGUCAAGCA
M36315.1/3-121  UCUUACGGCCAUUCACACCAGAAAGCACCAAAUCCCGUCCGAUCUUUGAAGUUAAGCU
X73890.1/1-118  AUCCACGGCCAUAGGACUCUGAAAACACCGCAUCCCGUCCGAUCUGCGAAGUUAACCA
X00574.1/1-118  AUCCACGGCCAUAGGACCCUGAAAGCACCGCAUCCCGUCCGAUCUGCGCAGUUAACCA
X05533.1/1-118  AGGAACGGCCAUACCACGUCGAUCGCACCACAUCCCGUCCGCUCUGUGAAGUUAAGCG
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<......>>..>>>>..>>....>>

X00069.1/1-118  CGGUAUCGCCUAGUCAGUACUGCGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGCAG
M36315.1/3-121  GGUGAUGGCGUCGUCAGUACUGUGGUGGGGGACCACACGGGAAUACGGCGUGCCGUAA
X73890.1/1-118  GAGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGUGG
X00574.1/1-118  GGGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGUGCUGUGG
X05533.1/1-118  GCGUCGGGCCGGGCUAGUACUACGGUGGGGGACCACGUGGGAAGCCCCGGUGCUGUUC
#=GC SS_cons    >>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>>>>>>>>>

X00069.1/1-118  UU.
M36315.1/3-121  GUC
X73890.1/1-118  UU.
X00574.1/1-118  UU.
X05533.1/1-118  CU.
#=GC SS_cons    >>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln31.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln31.fa

M18170.1/1-119  GGAUGCGAUCAUACGAGGACGAAAGCACCGGAUCCCAUCAGAACUCCGAAGUUAAGCG
M10436.1/2-120  UGGUGCGGUCAUACCACCGUUAAUGCACCGGAUCCCGUCGGAACUCCGUAGUUAAGCG
X00574.1/1-118  AUCCACGGCCAUAGGACCCUGAAAGCACCGCAUCCCGUCCGAUCUGCGCAGUUAACCA
X01619.1/1-119  GGAUGCGGUCAUACCAAGGCUACUACACCAGAUCCCAUCAGAACUCUGAAGUUAAGCG
X06854.1/5-111  ....ACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCCGAUCUGCGAAGUUAACCA
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<......>>..>>>>..>>....>>

M18170.1/1-119  UGCUUGGGCGAGAGUAGUACUAGGAUGGGUGACCUCCUGGGAAGUCCUUGUGUUGCAU
M10436.1/2-120  CGCUUGGGCCGGAAUAGUACUGGGAUGGGUGACCUCCCGGGAAGUCCCGGUGCCGCGC
X00574.1/1-118  GGGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGUGCUGUGG
X01619.1/1-119  CCUUUGGGCCGGAAUAGUACUGGGAUGGGUGACCUCCCGGGAAGUCCCGGUGCUGCAU
X06854.1/5-111  GAGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGUGC.....
#=GC SS_cons    >>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>>>>>>>>>

M18170.1/1-119  CCC
M10436.1/2-120  CCA
X00574.1/1-118  UU.
X01619.1/1-119  CCA
X06854.1/5-111  ...
#=GC SS_cons    >>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln32.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln32.fa

X00069.1/1-118  AUCUGCGGCCAUAGAACCGUGAAAAUACCGCAUCCCGUCCGAUCUGCGAAGUCAAGCA
X00190.1/1-118  GCCUACGGCCAUACCACCCUGGAAACGCCCGAUCUCGUCUGAUCUCGGAAGCUAAGCA
X05535.1/1-118  AGGAACGGCCAUACCACGUCGAUCGCACCACAUCCCGUCCGCUCUGUGAAGUUAAGCG
X00993.1/1-119  GCUUACGGCCAUAUCACGCUGAAUACACCGGUUCUCGUCCGAUCACCGAAGUUAAGCA
X05059.1/1-119  GGGUGCGAUCAUACCAGCACUAAUGCACCGGAUCCCAUCAGAACUCCGCAGUUAAGCG
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<......>>..>>>>..>>....>>

X00069.1/1-118  CGGUAUCGCCUAGUCAGUACUGCGGUGGGGGACCACGCGGGAAUCCUGGGUGCUGCAG
X00190.1/1-118  GGGUCGGGCUCGGUUAGUACUUGGAUGGGAGACUGCCUGGGAAUACCGAGUGUCGUAG
X05535.1/1-118  ACGUCGGGCCAGGCUAGUACUACGGUGGGGGACCACGUGGGAAGCCCUGGUGCUGUUC
X00993.1/1-119  ACGUAGAGCCUAGUCAGUACUUGGAUGGGUGACCGCCUGGGAAUACUAGGUGCUGUAA
X05059.1/1-119  UGCUUGGGCGAGAGUAGUACUAGGAUGGGUGACCUCCUGGGAAGUCCUCGUGUUGCAC
#=GC SS_cons    >>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>>>>>>>>>

X00069.1/1-118  UU.
X00190.1/1-118  GC.
X05535.1/1-118  CU.
X00993.1/1-119  GCA
X05059.1/1-119  CCC
#=GC SS_cons    >>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln33.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln33.fa

X62862.1/2-123        GGUGGCGGCCAUAGCGGCGGGGCAA.UUCCUGUACCCAUCCCGAACACAGAA
X62861.1/3-124        .UUAGCGGCCAUGGCGGCAGGGUUAACUCCUGUACCCAUCCCGAACACAGAA
X03407.1/5927-6048    UAAGGCGGCCAUAGCGGUGGGGUUA.CUCCCGUACCCAUCCCGAACACGGAA
L27166.1/1-122        GUAGGCGGCCAGAGCGGUAGGGAAA.CACCCGUACCCAUUCCGAACACGGAA
AF034619.1/5584-5700  ...GGCGGCCACAGCGGUGGGGUUGCCUCCCGUACCCAUCCCGAACACGGAA
#=GC SS_cons          <<<<<<<<<....<<.<<<<<...<.<..<<<<<<.......>>..>>>>..

X62862.1/2-123        GAUAAGCCCGCCUGCGUUCUAUACUGUACUAAAGUAUGAGAGUCUUUGGGAA
X62861.1/3-124        GAUAAGCCUGCCAGCGUUGUAUACGGUACUAAAGUGCGAGAGCCUUUGGGAA
X03407.1/5927-6048    GAUAAGCCCGCCUGCGUUCCGGUCAGUACUGGAGUGCGCGAGCCUCUGGGAA
L27166.1/1-122        GUUAAGCCUACCAGCGUAUCGUGAAGUACUGGAGUGAGCGAUCCUCAGGGAA
AF034619.1/5584-5700  GAUAAGCCCACCAGCGUUCCAGGGAGUACUGGAGUGCGCGAGCCUCUGGGAA
#=GC SS_cons          >>....>>>>>..>>..<<.<<....<.<<.....<<....>>.....>>.>

X62862.1/2-123        AUAUGGAACGCUGCCACCA
X62861.1/3-124        CUAUACUCCGCUGCUGAUC
X03407.1/5927-6048    AUCCGGUUCGCCGCCUACU
L27166.1/1-122        CCACGAGUCGCCGCCUACC
AF034619.1/5584-5700  AUCCGGUUCGCCGCCA...
#=GC SS_cons          ..>>.>>..>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln34.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln34.fa

L27168.1/1-120      .UUGGCGACCAUAGCGGCGAGUGACCUCCCGUACCCAUCCCGAACACGGAAGAU
X03407.1/5927-6048  UAAGGCGGCCAUAGCGGUGGGGUUACUCCCGUACCCAUCCCGAACACGGAAGAU
L27166.1/1-122      GUAGGCGGCCAGAGCGGUAGGGAAACACCCGUACCCAUUCCGAACACGGAAGUU
M34910.1/5-126      UUUGGCGGCCAUAGCGGCGGGGCAAUUCCUGUACCCAUCCCGAACACAGAAGAU
L27167.1/1-122      GAAGGCGGCCAGAGCGGUGGGGAAACACCCGUACCCAUUCCGAACACGGAAGUU
#=GC SS_cons        <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>.

L27168.1/1-120      AAGCUCGCCUGCGUUUCGGUCAGUACUGGAUUGGGCGACCCUCUGGGAAAUCUG
X03407.1/5927-6048  AAGCCCGCCUGCGUUCCGGUCAGUACUGGAGUGCGCGAGCCUCUGGGAAAUCCG
L27166.1/1-122      AAGCCUACCAGCGUAUCGUGAAGUACUGGAGUGAGCGAUCCUCAGGGAACCACG
M34910.1/5-126      AAGCCCGCCUGCGUUCUAUACUGUACUAAAGUAUGAGAGUCUUUGGGAAAUAUG
L27167.1/1-122      AAGCCCACCAGCGUACCGUGAAGUACUGGAGUGAGCGAUCCUCUGGGAACCACG
#=GC SS_cons        ...>>>>>..>>..<<.<<....<.<<.....<<....>>.....>>.>..>>.

L27168.1/1-120      AUUCGCCGCCACC.
X03407.1/5927-6048  GUUCGCCGCCUACU
L27166.1/1-122      AGUCGCCGCCUACC
M34910.1/5-126      GAACGCUGCCAUCU
L27167.1/1-122      AGUCGCCGCCUGCC
#=GC SS_cons        >>..>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln35.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln35.fa

X02128.1/24-139     G...GCGGCCAGAGCGGUGAGGUUC.CACCCGUACCCAUCCCGAACACGGAAGU
X72495.1/5075-5190  ..AGGCGGCCAUCGCGGCGGGGUUC.CUCCCGUACCCAUCCCGAACACGGAAGA
X62861.1/3-124      .UUAGCGGCCAUGGCGGCAGGGUUAACUCCUGUACCCAUCCCGAACACAGAAGA
M36188.1/5-125      UUUGGCGCC.AUAGCGGCAGUGUAA.CUCCUGUACCCAUCCCGAACACAGUAGA
X62865.1/3-123      .UUGGCGGUCAUGACGGCAGGGUAA.CUCCUGUACCCAUUCCGAACACAGCAGA
#=GC SS_cons        <<<<<<<<<....<<.<<<<<...<.<..<<<<<<.......>>..>>>>..>>

X02128.1/24-139     UAAGCUCACCUGCGUUCUGGUCAGUACUGGAGUGAGCGAUCCUCUGGGAAAUCC
X72495.1/5075-5190  UAAGCCUGCCUGCGUAUUGGUGAGUACUGGAGUGGGAGACCCUCUGGGAGAGCC
X62861.1/3-124      UAAGCCUGCCAGCGUUGUAUACGGUACUAAAGUGCGAGAGCCUUUGGGAACUAU
M36188.1/5-125      UAAGCCUGCCCGCGUUCCUUACUGUACUGAAGUGUGCGAGCCUUCGGGAACUCU
X62865.1/3-123      UAAGCCUGCCCGUGUUCCUUACUGUACUGAAGUGUGCGAGCCUUCGGGAACUCU
#=GC SS_cons        ....>>>>>..>>..<<.<<....<.<<.....<<....>>.....>>.>..>>

X02128.1/24-139     AGUUCGCCGCCC...
X72495.1/5075-5190  GAUUCGCCGCC....
X62861.1/3-124      ACUCCGCUGCUGAUC
M36188.1/5-125      GGAUCGCUGCCAUAC
X62865.1/3-123      GGAUCGCUGCCAACU
#=GC SS_cons        .>>..>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln36.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln36.fa

X62864.1/3-123  UCUGGCAGCCAUAGCGGCAGGUGUAAUC.CUGUACCCAUCCCGAACACAGUAGAUAAG
L27170.1/1-120  AGUGGUGGCCAUAUCGGCGGGGUUCCUCCCCGUACCCAUCCUGAACACGGAAGAUAAG
L27168.1/1-120  .UUGGCGACCAUAGCGGCGAGUGACCUC.CCGUACCCAUCCCGAACACGGAAGAUAAG
X62862.1/2-123  GGUGGCGGCCAUAGCGGCGGGGCAAUUC.CUGUACCCAUCCCGAACACAGAAGAUAAG
X14441.1/5-123  G..GGCGGCCAGAGCGGUGAGGUUCCAC.CCGUACCCAUCCCGAACACGGAAGUUAAG
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<...<<<<<<.......>>..>>>>..>>....

X62864.1/3-123  CCUGCCCGCGUUCCUUGCCUGUACUGAAGUGUGCGAGC.UUCGGGAACUCUGGAUC..
L27170.1/1-120  CCCGCCAGCG.UCCGGC.AAGUACUGGAGUGCGCGAGCCUCUGGGAAAUCCGGU..UC
L27168.1/1-120  CUCGCCUGCGUUUCGGU.CAGUACUGGAUUGGGCGACCCUCUGGGAAAUCUGAUUC..
X62862.1/2-123  CCCGCCUGCGUUCUAUA.CUGUACUAAAGUAUGAGAGUCUUUGGGAAAUAUGGAAC..
X14441.1/5-123  CUCGCCUGCGUUCUGGU.CAGUACUGGAGUGAGCGAUCCUCUGGGAAAUCCAGUUC..
#=GC SS_cons    >>>>>..>><.<<.<<.....<.<<.....<<....>>.....>>.>..>>.>>..>.

X62864.1/3-123  GU.GCCAUAU
L27170.1/1-120  GCCGCCAC..
L27168.1/1-120  GCCGCCACC.
X62862.1/2-123  GCUGCCACCA
X14441.1/5-123  GCCGCCCCU.
#=GC SS_cons    >>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln37.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln37.fa

X62862.1/2-123      GGUGGCGGCCAUAGCGGCGGGGCAAUUCCUGUACCCAUCCCGAACACAGAAGAU
X62860.1/3-123      .UUGGCGGCCAUGGCGGCGGGGUAACUCCUGUACCCAUCCCGAACACAGCAGAU
X72495.1/5075-5190  ..AGGCGGCCAUCGCGGCGGGGUUCCUCCCGUACCCAUCCCGAACACGGAAGAU
X14441.1/5-123      G..GGCGGCCAGAGCGGUGAGGUUCCACCCGUACCCAUCCCGAACACGGAAGUU
L27169.1/1-121      GUAGGCGGCCAGAGCGGUAGGGAAACACCCGUACCCAUUCCGAACACGGAAGUU
#=GC SS_cons        <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>.

X62862.1/2-123      AAGCCCGCCUGCGUUCUAUACUGUACUAAAGUAUGAGAGUCUUUGGGAAAUAUG
X62860.1/3-123      AAACCCGCCCGCGUUCCGUACGGUACUAAAGUGCGCGAGCCUUUGGGAACUGCG
X72495.1/5075-5190  AAGCCUGCCUGCGUAUUGGUGAGUACUGGAGUGGGAGACCCUCUGGGAGAGCCG
X14441.1/5-123      AAGCUCGCCUGCGUUCUGGUCAGUACUGGAGUGAGCGAUCCUCUGGGAAAUCCA
L27169.1/1-121      AAGCCUACCAGCGUAUCGUGAAGUACUGGAGUGAGCGAUCCUCUGGGAACCACG
#=GC SS_cons        ...>>>>>..>>..<<.<<....<.<<.....<<....>>.....>>.>..>>.

X62862.1/2-123      GAACGCUGCCACCA
X62860.1/3-123      GAUAGCUGCCAGCU
X72495.1/5075-5190  AUUCGCCGCC....
X14441.1/5-123      GUUCGCCGCCCCU.
L27169.1/1-121      AGUCGCCGCCUAC.
#=GC SS_cons        >>..>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln38.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln38.fa

L27169.1/1-121        GUAGGCGGCCAGAGCGGUAGGGAAA.CAC.CCGUACCCAUUCCGAACACGGA
AF034619.1/5584-5700  ...GGCGGCCACAGCGGUGGGGUUGCCUC.CCGUACCCAUCCCGAACACGGA
X62864.1/3-123        UCUGGCAGCCAUAGCGGCAGGUGUA.AUC.CUGUACCCAUCCCGAACACAGU
L27170.1/1-120        AGUGGUGGCCAUAUCGGCGGGGUUC.CUCCCCGUACCCAUCCUGAACACGGA
L27163.1/1-119        .GUAGCGGCCACAGCGGUGGGGUUC.CUC.CCGUACCCAUCCCGAACACGGA
#=GC SS_cons          <<<<<<<<<....<<.<<<<<...<.<...<<<<<<.......>>..>>>>.

L27169.1/1-121        AGUUAAGCCUACCAGCGUAUCGUG.AAGUACUGGAGUGAGCGAUCCUCUGGG
AF034619.1/5584-5700  AGAUAAGCCCACCAGCGUUCCAGG.GAGUACUGGAGUGCGCGAGCCUCUGGG
X62864.1/3-123        AGAUAAGCCUGCCCGCGUUCCUUGCCUGUACUGAAGUGUGCGAGC.UUCGGG
L27170.1/1-120        AGAUAAGCCCGCCAGCG.UCCGGC.AAGUACUGGAGUGCGCGAGCCUCUGGG
L27163.1/1-119        AGAUAAGCCCACCAGCGUUCCGGG.GAGUACUGGAGUGCGCGACCCUCUGGG
#=GC SS_cons          .>>....>>>>>..>><.<<.<<.....<.<<.....<<....>>.....>>

L27169.1/1-121        AACCACGAGUC...GCCGCCUAC.
AF034619.1/5584-5700  AAAUCCGGUUC...GCCGCCA...
X62864.1/3-123        AACUCUGGAUC...GU.GCCAUAU
L27170.1/1-120        AAAUCCGGU...UCGCCGCCAC..
L27163.1/1-119        AA.ACCGGGUUC..GCCGCUAC..
#=GC SS_cons          .>..>>.>>...>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln39.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln39.fa

M34910.1/5-126  UUUGGCGGCCAUAGCGGCGGGGCAAUUCCUGUACCCAUCCCGAACACAGAAGAUAAGC
X62865.1/3-123  .UUGGCGGUCAUGACGGCAGGGUAACUCCUGUACCCAUUCCGAACACAGCAGAUAAGC
L27166.1/1-122  GUAGGCGGCCAGAGCGGUAGGGAAACACCCGUACCCAUUCCGAACACGGAAGUUAAGC
L27167.1/1-122  GAAGGCGGCCAGAGCGGUGGGGAAACACCCGUACCCAUUCCGAACACGGAAGUUAAGC
L27162.1/2-122  GCA.GCGGCCAUAGCGGUGGGGCGACACCCGUACCCAUUCCGAACACGGAAGUUAAGC
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>....>

M34910.1/5-126  CCGCCUGCGUUCUAUACUGUACUAAAGUAUGAGAGUCUUUGGGAAAUAUGGAACGCUG
X62865.1/3-123  CUGCCCGUGUUCCUUACUGUACUGAAGUGUGCGAGCCUUCGGGAACUCUGGAUCGCUG
L27166.1/1-122  CUACCAGCGUAUCGUGAAGUACUGGAGUGAGCGAUCCUCAGGGAACCACGAGUCGCCG
L27167.1/1-122  CCACCAGCGUACCGUGAAGUACUGGAGUGAGCGAUCCUCUGGGAACCACGAGUCGCCG
L27162.1/2-122  CCACCAGCGUACCGGGAAGUACUGGAGUGAGCGAUCCUCUGGGAAGCGGGGUUCGCCG
#=GC SS_cons    >>>>..>>..<<.<<....<.<<.....<<....>>.....>>.>..>>.>>..>>>>

M34910.1/5-126  CCAUCU
X62865.1/3-123  CCAACU
L27166.1/1-122  CCUACC
L27167.1/1-122  CCUGCC
L27162.1/2-122  CCUGCC
#=GC SS_cons    >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln40.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln40.fa

X62860.1/3-123   .UUGGCGGCCAUGGCGGCGGGGUAACUCCUGUACCCAUCCCGAACACAGCAGAUAAA
X02128.1/24-139  G...GCGGCCAGAGCGGUGAGGUUCCACCCGUACCCAUCCCGAACACGGAAGUUAAG
M34910.1/5-126   UUUGGCGGCCAUAGCGGCGGGGCAAUUCCUGUACCCAUCCCGAACACAGAAGAUAAG
L27168.1/1-120   .UUGGCGACCAUAGCGGCGAGUGACCUCCCGUACCCAUCCCGAACACGGAAGAUAAG
L27167.1/1-122   GAAGGCGGCCAGAGCGGUGGGGAAACACCCGUACCCAUUCCGAACACGGAAGUUAAG
#=GC SS_cons     <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>....

X62860.1/3-123   CCCGCCCGCGUUCCGUACGGUACUAAAGUGCGCGAGCCUUUGGGAACUGCGGAUAGC
X02128.1/24-139  CUCACCUGCGUUCUGGUCAGUACUGGAGUGAGCGAUCCUCUGGGAAAUCCAGUUCGC
M34910.1/5-126   CCCGCCUGCGUUCUAUACUGUACUAAAGUAUGAGAGUCUUUGGGAAAUAUGGAACGC
L27168.1/1-120   CUCGCCUGCGUUUCGGUCAGUACUGGAUUGGGCGACCCUCUGGGAAAUCUGAUUCGC
L27167.1/1-122   CCCACCAGCGUACCGUGAAGUACUGGAGUGAGCGAUCCUCUGGGAACCACGAGUCGC
#=GC SS_cons     >>>>>..>>..<<.<<....<.<<.....<<....>>.....>>.>..>>.>>..>>

X62860.1/3-123   UGCCAGCU
X02128.1/24-139  CGCCC...
M34910.1/5-126   UGCCAUCU
L27168.1/1-120   CGCCACC.
L27167.1/1-122   CGCCUGCC
#=GC SS_cons     >>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln41.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln41.fa

L27166.1/1-122      GUAGGCGGCCAGAGCGGUAGGGAAACAC.CCGUACCCAUUCCGAACACGGAAGU
L27162.1/2-122      GCA.GCGGCCAUAGCGGUGGGGCGACAC.CCGUACCCAUUCCGAACACGGAAGU
L27170.1/1-120      AGUGGUGGCCAUAUCGGCGGGGUUCCUCCCCGUACCCAUCCUGAACACGGAAGA
X03407.1/5927-6048  UAAGGCGGCCAUAGCGGUGGGGUUACUC.CCGUACCCAUCCCGAACACGGAAGA
M36188.1/5-125      UUUGGCGCC.AUAGCGGCAGUGUAACUC.CUGUACCCAUCCCGAACACAGUAGA
#=GC SS_cons        <<<<<<<<<....<<.<<<<<...<<...<<<<<<.......>>..>>>>..>>

L27166.1/1-122      UAAGCCUACCAGCGUAUCGUGAAGUACUGGAGUGAGCGAUCCUCAGGGAACCAC
L27162.1/2-122      UAAGCCCACCAGCGUACCGGGAAGUACUGGAGUGAGCGAUCCUCUGGGAAGCGG
L27170.1/1-120      UAAGCCCGCCAGCG.UCCGGCAAGUACUGGAGUGCGCGAGCCUCUGGGAAAUCC
X03407.1/5927-6048  UAAGCCCGCCUGCGUUCCGGUCAGUACUGGAGUGCGCGAGCCUCUGGGAAAUCC
M36188.1/5-125      UAAGCCUGCCCGCGUUCCUUACUGUACUGAAGUGUGCGAGCCUUCGGGAACUCU
#=GC SS_cons        ....>>>>>..>><.<<.<<....<.<<.....<<....>>.....>>.>..>>

L27166.1/1-122      GAGUC..GCCGCCUACC
L27162.1/2-122      GGUUC..GCCGCCUGCC
L27170.1/1-120      GGU..UCGCCGCCAC..
X03407.1/5927-6048  GGUUC..GCCGCCUACU
M36188.1/5-125      GGAUC..GCUGCCAUAC
#=GC SS_cons        .>>..>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln42.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln42.fa

M34910.1/5-126  UUUGGCGGCCAUAGCGGCGGGGCAA.UUCCUGUACCCAUCCCGAACACAGAAGAUAAG
L27168.1/1-120  .UUGGCGACCAUAGCGGCGAGUGAC.CUCCCGUACCCAUCCCGAACACGGAAGAUAAG
X62862.1/2-123  GGUGGCGGCCAUAGCGGCGGGGCAA.UUCCUGUACCCAUCCCGAACACAGAAGAUAAG
L27163.1/1-119  .GUAGCGGCCACAGCGGUGGGGUUC.CUCCCGUACCCAUCCCGAACACGGAAGAUAAG
X62861.1/3-124  .UUAGCGGCCAUGGCGGCAGGGUUAACUCCUGUACCCAUCCCGAACACAGAAGAUAAG
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<.<..<<<<<<.......>>..>>>>..>>....

M34910.1/5-126  CCCGCCUGCGUUCUAUACUGUACUAAAGUAUGAGAGUCUUUGGGAAAUAUGGAAC.GC
L27168.1/1-120  CUCGCCUGCGUUUCGGUCAGUACUGGAUUGGGCGACCCUCUGGGAAAUCUGAUUC.GC
X62862.1/2-123  CCCGCCUGCGUUCUAUACUGUACUAAAGUAUGAGAGUCUUUGGGAAAUAUGGAAC.GC
L27163.1/1-119  CCCACCAGCGUUCCGGGGAGUACUGGAGUGCGCGACCCUCUGGGAA.ACCGGGUUCGC
X62861.1/3-124  CCUGCCAGCGUUGUAUACGGUACUAAAGUGCGAGAGCCUUUGGGAACUAUACUCC.GC
#=GC SS_cons    >>>>>..>>..<<.<<....<.<<.....<<....>>.....>>.>..>>.>>...>>

M34910.1/5-126  UGCCAUCU
L27168.1/1-120  CGCCACC.
X62862.1/2-123  UGCCACCA
L27163.1/1-119  CGCUAC..
X62861.1/3-124  UGCUGAUC
#=GC SS_cons    >>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln43.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln43.fa

X62862.1/2-123  GGUGGCGGCCAUAGCGGCGGGGCAAUUCCUGUACCCAUCCCGAACACAGAAGAUAAGC
L27169.1/1-121  GUAGGCGGCCAGAGCGGUAGGGAAACACCCGUACCCAUUCCGAACACGGAAGUUAAGC
L27343.1/3-116  ....GCGGCCAGGGCGGAGGGGAAACACCCGUACCCAUUCCGAACACGGAAGUGAAGC
M34910.1/5-126  UUUGGCGGCCAUAGCGGCGGGGCAAUUCCUGUACCCAUCCCGAACACAGAAGAUAAGC
L27162.1/2-122  GCA.GCGGCCAUAGCGGUGGGGCGACACCCGUACCCAUUCCGAACACGGAAGUUAAGC
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>....>

X62862.1/2-123  CCGCCUGCGUUCUAUACUGUACUAAAGUAUGAGAGUCUUUGGGAAAUAUGGAACGCUG
L27169.1/1-121  CUACCAGCGUAUCGUGAAGUACUGGAGUGAGCGAUCCUCUGGGAACCACGAGUCGCCG
L27343.1/3-116  CCUCCAGCGAACCAGCUAGUACUAGAGUGGGAGACCCUCUGGGAGCGCUGGUUCGCCG
M34910.1/5-126  CCGCCUGCGUUCUAUACUGUACUAAAGUAUGAGAGUCUUUGGGAAAUAUGGAACGCUG
L27162.1/2-122  CCACCAGCGUACCGGGAAGUACUGGAGUGAGCGAUCCUCUGGGAAGCGGGGUUCGCCG
#=GC SS_cons    >>>>..>>..<<.<<....<.<<.....<<....>>.....>>.>..>>.>>..>>>>

X62862.1/2-123  CCACCA
L27169.1/1-121  CCUAC.
L27343.1/3-116  CC....
M34910.1/5-126  CCAUCU
L27162.1/2-122  CCUGCC
#=GC SS_cons    >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln44.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln44.fa

X58874.1/548-664      UUCGGUGGUCAUAGCGUAGGGGAAACGCCCGGUUACAUUUCGAACCCGGAAG
X59479.1/518-634      UUCGGUGGUCAUAGCGUUAGGGAAACGCCCGGUUACAUUUCGAACCCGGAAG
AF114036.1/6058-6174  UUCGGUGGUCAUAGCGUGAGGGAAACGCCCGGUUACAUUCCGAACCCGGAAG
Z50736.1/3-119        UUCGGUGGUGUUGGCGGAGGGGAAACGCCCGGUCCCAUUCCGAACCCGGAAG
D13615.1/3-119        UUCGGUGGUUUUGGCGAGGGGGAAACACCCGGUCCCAUUCCGAACCCGGAAG
#=GC SS_cons          <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>

X58874.1/548-664      CUAAGCCUUACAGCGCCGAUGGUACUGCAG.GGGGGACCCUGUGGGAGAGUA
X59479.1/518-634      CUAAGCCUUUCAGCGCCGAUGGUACUGCAG.GGGGGACCCUGUGGGAGAGUA
AF114036.1/6058-6174  CUAAGCCUCAGAGCGCCCAUGGUACUGCAG.GGGGGACCCUGUGGGAGAGUA
Z50736.1/3-119        CUAAGCCCUCCUGCGCCGAUGGUACUGCACUC.GUGAGGGUGUGGGAGAGUA
D13615.1/3-119        UUAAGCCUCUCAGCGCCGAUGGUACUGCA.UGGGAGACUGUGUGGGAGAGUA
#=GC SS_cons          >....>>>>>..>><<<.<<..<.<<.....<<....>>.....>>.>.>>.

X58874.1/548-664      GGACGCCGCCGAAC
X59479.1/518-634      GGACGCCGCCGAAC
AF114036.1/6058-6174  GGACGCCGCCGAAC
Z50736.1/3-119        GGACGCUGCCGAAC
D13615.1/3-119        GGACACCGCCGGAC
#=GC SS_cons          >>>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln45.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln45.fa

X03701.1/3-119  CCCGGCGACCAUAGCGCUUUGGACCCACCUGAUUUCCAUGCCGAACUCAGAAGUGAAA
X02247.1/3-118  CCUGGCGACCAUAGCGAUUUGGACCCACCUGAU.UCCAUGCCGAACUCAGUAGUGAAA
X06688.1/3-118  CUUGGCGACCAUAGCGUUGUGGACCCACCUGAU.UCCAUGCCGAACUCAGAAGUGAAA
X02237.1/3-118  CCUGGCGACCAUAGUGUUUUGGACCCACCUGAU.UCCAUUCCGAACUCAGAAGUGAAA
X02255.1/3-118  CUUGGCGACCAUAGCGUUAUGGACCCACCUGAU.CCCAUGCCGAACUCAGUAGUGAAA
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<.<.......>>..>>>>..>>....

X03701.1/3-119  CGAAGUAGCGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGUCACCGCCAGG
X02247.1/3-118  CGAAUUAGCGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGACAUCGCCAGG
X06688.1/3-118  CGCAAUAGCGCCGAUGGUAGUGUGGGGCUUCCCCAUGUGAGAGUAGGACAUCGCCAGG
X02237.1/3-118  CGAAACAGCGUCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGAACAUCGCCAGG
X02255.1/3-118  CGUAAUAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGGACAUCGCCAGG
#=GC SS_cons    >>>>>..>><<<.<<..<.<<...<<....>>.....>>.>.>>.>>>.>>>>>>>>>

X03701.1/3-119  C
X02247.1/3-118  C
X06688.1/3-118  C
X02237.1/3-118  C
X02255.1/3-118  C
#=GC SS_cons    .
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln46.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln46.fa

X00932.1/3-118  CCUGGCGACCAUAGUGUUGUGGACCCACCUGAUU..CCAUGCCGAACUCAGAAGUGAA
X06687.1/3-118  CUUGGUGAUCAUAGCGUUGUGGACCCACCUGACU..CCAUGCCGAACUCAGAAGUGAA
X02030.1/3-120  CUUGGCGACCAUAGCGAUUUGGACCCACCUGAUCUUCCAUUCCGAACUCAGAAGUGAA
X05041.1/3-118  CUUGGCGACCAUAGUGUUGUGGACCCACCUGACU..CUAUGCCGAACUCAGAAGUGAA
X06688.1/3-118  CUUGGCGACCAUAGCGUUGUGGACCCACCUGAUU..CCAUGCCGAACUCAGAAGUGAA
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.........>>..>>>>..>>...

X00932.1/3-118  ACACAACAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGGACAUCGCCAG
X06687.1/3-118  ACACAACAGCGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGACAUCGCUAG
X02030.1/3-120  ACGAAUUAGCGCCGAUGGUAGUGUGGGGCUUCCCCAUGUGAGAGUAGGACAUCGCCAG
X05041.1/3-118  ACGUAAUAGCGCCGAUGGUAGUGUGGGGCUUCCCCAUGUGAGAGUAGGACAUCGCCAG
X06688.1/3-118  ACGCAAUAGCGCCGAUGGUAGUGUGGGGCUUCCCCAUGUGAGAGUAGGACAUCGCCAG
#=GC SS_cons    .>>>>>..>><<<.<<..<.<<...<<....>>.....>>.>.>>.>>>.>>>>>>>>

X00932.1/3-118  GC
X06687.1/3-118  GC
X02030.1/3-120  GC
X05041.1/3-118  GC
X06688.1/3-118  GC
#=GC SS_cons    >.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln47.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln47.fa

X06687.1/3-118  CUUGGUGAUCAUAGCGUUGUGGACCCACCUGACUCCAUGCCGAACUCAGAAGUGAAAC
X02022.1/3-118  CUUGGCGACCAUAGCGUUAUGGACCCACCUGAUCCCUUGCCGAACUCAGUAGUGAAAC
X02239.1/3-118  CCUGGCGACCAUAGCGUUUUGGAUCCACCUGACUCCAUUCCGAACUCAGAAGUGAAAC
X02243.1/3-118  CCUGGCGACCAUAGCGAUUUGGACCCACCUGAUUCCAUGCCGAACUCAGAAGUGAAAC
X02253.1/3-118  CCUGGCGACCAUAGCAUUAUGGACCCACCUGAUCCCAUGCCGAACUCAGAAGUGAAAC
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>....>

X06687.1/3-118  ACAACAGCGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGACAUCGCUAGGC
X02022.1/3-118  GUAAUAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGGACAUCGCCAGGC
X02239.1/3-118  GAAAUAGCGUCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGAACAUCGCCAGGC
X02243.1/3-118  GAAUUAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGGACAUCGCCAGGC
X02253.1/3-118  GUAAUAGCGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGACAUCGCCAGGC
#=GC SS_cons    >>>>..>><<<.<<..<.<<...<<....>>.....>>.>.>>.>>>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln48.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln48.fa

X02251.1/3-118  CUUGGCGACCAUAGCGUUGUGGACCCACCUGA.UUCCAUGCCGAACUCAGAAGUGAAA
X02236.1/3-119  CCUGGCGACCAUAGUGUUUUGGACCCACCUGACUUCCAUGCCGAACUCAGAAGUGAAA
X02253.1/3-118  CCUGGCGACCAUAGCAUUAUGGACCCACCUGA.UCCCAUGCCGAACUCAGAAGUGAAA
X02022.1/3-118  CUUGGCGACCAUAGCGUUAUGGACCCACCUGA.UCCCUUGCCGAACUCAGUAGUGAAA
X02250.1/3-118  UCUGGUGAUAAUAGCAUUGUGGAACCACCUGA.UCCCAUCCCGAACUCAGAAGUGAAA
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<.<<.......>>..>>>>..>>....

X02251.1/3-118  CGCAAUAGCGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGACAUCGCCAGG
X02236.1/3-119  CGAAAUAGCGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGACAUCGCCAGG
X02253.1/3-118  CGUAAUAGCGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGACAUCGCCAGG
X02022.1/3-118  CGUAAUAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGGACAUCGCCAGG
X02250.1/3-118  CGCAAUUGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGGUCAUUGCCAGG
#=GC SS_cons    >>>>>..>><<<.<<..<.<<...<<....>>.....>>.>.>>.>>>.>>>>>>>>>

X02251.1/3-118  C
X02236.1/3-119  C
X02253.1/3-118  C
X02022.1/3-118  C
X02250.1/3-118  C
#=GC SS_cons    .
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln49.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln49.fa

X02248.1/3-118  CCUGGCGACCAUAGCGUUUUGGACCCACCUGAUUCCAUGCCGAACUCAGUAGUGAAAC
X02235.1/3-118  CCUGGCGACCAUAGUGUUUUGGACCCACCUGAUUCCAUUCCGAACUCAGAAGUGAAAC
X02253.1/3-118  CCUGGCGACCAUAGCAUUAUGGACCCACCUGAUCCCAUGCCGAACUCAGAAGUGAAAC
X02254.1/3-118  CUUGGCGACCAUAGCGUUAUGGACCCACCUGAUUCCAUGCCGAACUCAGAAGUGAAAC
X02252.1/3-118  CCUGGCGACCAUAGCGUUGUGGUCCCACCUGAAUCCAUGCCGAACUCAGAAGUGAAAC
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>....>

X02248.1/3-118  GAAACAGCGUCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGAACAUCGCCAGGC
X02235.1/3-118  GAAAUAGCGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGACAUCGCCAGGC
X02253.1/3-118  GUAAUAGCGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGACAUCGCCAGGC
X02254.1/3-118  GUAAUAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGGACAUCGCCAGGC
X02252.1/3-118  GCAGCAGCGUCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGGACAUCGCCAGGC
#=GC SS_cons    >>>>..>><<<.<<..<.<<...<<....>>.....>>.>.>>.>>>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln50.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln50.fa

X02022.1/3-118  CUUGGCGACCAUAGCGUUAUGGACCCACCUGA.UC..CCUUGCCGAACUCAGUAGUGA
X02236.1/3-119  CCUGGCGACCAUAGUGUUUUGGACCCACCUGACUU..CCAUGCCGAACUCAGAAGUGA
X02239.1/3-118  CCUGGCGACCAUAGCGUUUUGGAUCCACCUGA.CU..CCAUUCCGAACUCAGAAGUGA
X02235.1/3-118  CCUGGCGACCAUAGUGUUUUGGACCCACCUGA.UU..CCAUUCCGAACUCAGAAGUGA
X02030.1/3-120  CUUGGCGACCAUAGCGAUUUGGACCCACCUGA.UCUUCCAUUCCGAACUCAGAAGUGA
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<.<<.........>>..>>>>..>>..

X02022.1/3-118  AACGUAAUAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGGACAUCGCCA
X02236.1/3-119  AACGAAAUAGCGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGACAUCGCCA
X02239.1/3-118  AACGAAAUAGCGUCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGAACAUCGCCA
X02235.1/3-118  AACGAAAUAGCGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGACAUCGCCA
X02030.1/3-120  AACGAAUUAGCGCCGAUGGUAGUGUGGGGCUUCCCCAUGUGAGAGUAGGACAUCGCCA
#=GC SS_cons    ..>>>>>..>><<<.<<..<.<<...<<....>>.....>>.>.>>.>>>.>>>>>>>

X02022.1/3-118  GGC
X02236.1/3-119  GGC
X02239.1/3-118  GGC
X02235.1/3-118  GGC
X02030.1/3-120  GGC
#=GC SS_cons    >>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln51.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln51.fa

X00932.1/3-118  CCUGGCGACCAUAGUGUUGUGGACCCACCUGAUUCCAUGCCGAACUCAGAAGUGAAAC
X02252.1/3-118  CCUGGCGACCAUAGCGUUGUGGUCCCACCUGAAUCCAUGCCGAACUCAGAAGUGAAAC
X06688.1/3-118  CUUGGCGACCAUAGCGUUGUGGACCCACCUGAUUCCAUGCCGAACUCAGAAGUGAAAC
X02239.1/3-118  CCUGGCGACCAUAGCGUUUUGGAUCCACCUGACUCCAUUCCGAACUCAGAAGUGAAAC
X02247.1/3-118  CCUGGCGACCAUAGCGAUUUGGACCCACCUGAUUCCAUGCCGAACUCAGUAGUGAAAC
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>....>

X00932.1/3-118  ACAACAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGGACAUCGCCAGGC
X02252.1/3-118  GCAGCAGCGUCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGGACAUCGCCAGGC
X06688.1/3-118  GCAAUAGCGCCGAUGGUAGUGUGGGGCUUCCCCAUGUGAGAGUAGGACAUCGCCAGGC
X02239.1/3-118  GAAAUAGCGUCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGAACAUCGCCAGGC
X02247.1/3-118  GAAUUAGCGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGACAUCGCCAGGC
#=GC SS_cons    >>>>..>><<<.<<..<.<<...<<....>>.....>>.>.>>.>>>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln52.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln52.fa

X02251.1/3-118  CUUGGCGACCAUAGCGUUGUGGACCCACCUGAUUCCAUGCCGAACUCAGAAGUGAAAC
X16193.1/4-119  CUUGGCGACCAUAGCGCUUUGGACCCACCUGAUUCCAUGCCGAACUCAGAAGUGAAAC
X00930.1/3-118  CCUGGCGACCAUAGCGUUUUGGACCCACCUGAACCCAUUCCGAACUCAGAAGUGAAAC
X02249.1/3-117  UUUGGUGACCAUAGUGUUGUGGUACCACCUGACUCCAUUCCGAACUCAGUAGUGAAAC
X02243.1/3-118  CCUGGCGACCAUAGCGAUUUGGACCCACCUGAUUCCAUGCCGAACUCAGAAGUGAAAC
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>....>

X02251.1/3-118  GCAAUAGCGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGACAUCGCCAGGC
X16193.1/4-119  AGAGCAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGGACAUCGCCAGGC
X00930.1/3-118  GAAAUAGCGUCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGAACAUCGCCAGGC
X02249.1/3-117  GUAAUAACGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGU.AUCGCCAGGC
X02243.1/3-118  GAAUUAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGGACAUCGCCAGGC
#=GC SS_cons    >>>>..>><<<.<<..<.<<...<<....>>.....>>.>.>>.>>>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln53.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln53.fa

X00930.1/3-118  CCUGGCGACCAUAGCGUUUUGGACCCACCUGAACCCAUUCCGAACUCAGAAGUGAAAC
X15180.1/3-118  UCUGGAAACCAUAGCAUUGUGGCACCACCUGAUCCCAUCCCGAACUCAGAAGUGAAAC
X02022.1/3-118  CUUGGCGACCAUAGCGUUAUGGACCCACCUGAUCCCUUGCCGAACUCAGUAGUGAAAC
X05041.1/3-118  CUUGGCGACCAUAGUGUUGUGGACCCACCUGACUCUAUGCCGAACUCAGAAGUGAAAC
X02246.1/3-118  CCUGGCGACCAUAGCGUUUUGGACCCACCUGAUUCCAUGCCGAACUCAGAAGUGAAAC
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>....>

X00930.1/3-118  GAAAUAGCGUCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGAACAUCGCCAGGC
X15180.1/3-118  GCAAUUGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGGUCAUUUCCAGGC
X02022.1/3-118  GUAAUAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGGACAUCGCCAGGC
X05041.1/3-118  GUAAUAGCGCCGAUGGUAGUGUGGGGCUUCCCCAUGUGAGAGUAGGACAUCGCCAGGC
X02246.1/3-118  GAAACAGCGUCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGAACAUCGCCAGGC
#=GC SS_cons    >>>>..>><<<.<<..<.<<...<<....>>.....>>.>.>>.>>>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln54.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln54.fa

X02253.1/3-118  CCUGGCGACCAUAGCAUUAUGGACCCACCUGAUCCCAUGCCGAACUCAGAAGUGAAAC
X02022.1/3-118  CUUGGCGACCAUAGCGUUAUGGACCCACCUGAUCCCUUGCCGAACUCAGUAGUGAAAC
X16193.1/4-119  CUUGGCGACCAUAGCGCUUUGGACCCACCUGAUUCCAUGCCGAACUCAGAAGUGAAAC
X05041.1/3-118  CUUGGCGACCAUAGUGUUGUGGACCCACCUGACUCUAUGCCGAACUCAGAAGUGAAAC
X02255.1/3-118  CUUGGCGACCAUAGCGUUAUGGACCCACCUGAUCCCAUGCCGAACUCAGUAGUGAAAC
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>....>

X02253.1/3-118  GUAAUAGCGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGACAUCGCCAGGC
X02022.1/3-118  GUAAUAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGGACAUCGCCAGGC
X16193.1/4-119  AGAGCAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGGACAUCGCCAGGC
X05041.1/3-118  GUAAUAGCGCCGAUGGUAGUGUGGGGCUUCCCCAUGUGAGAGUAGGACAUCGCCAGGC
X02255.1/3-118  GUAAUAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGGACAUCGCCAGGC
#=GC SS_cons    >>>>..>><<<.<<..<.<<...<<....>>.....>>.>.>>.>>>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln55.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln55.fa

X00930.1/3-118  CCUGGCGACCAUAGCGUUUUGGACCCACCUGAA.CCCAUUCCGAACUCAGAAGUGAAA
X05041.1/3-118  CUUGGCGACCAUAGUGUUGUGGACCCACCUGAC.UCUAUGCCGAACUCAGAAGUGAAA
X15180.1/3-118  UCUGGAAACCAUAGCAUUGUGGCACCACCUGAU.CCCAUCCCGAACUCAGAAGUGAAA
X15181.1/3-118  UCUGGAAACCAUAGCAUUGUGGCCCCACCUGAU.CCCAUCCCGAACUCAGAAGUGAAA
X02241.1/3-119  CCUGGCGACCAUAGCGUUUUGGACCCACCUGAUUUCCAUGCCGAACUCAGAAGUGAAA
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<.<.......>>..>>>>..>>....

X00930.1/3-118  CGAAAUAGCGUCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGAACAUCGCCAGG
X05041.1/3-118  CGUAAUAGCGCCGAUGGUAGUGUGGGGCUUCCCCAUGUGAGAGUAGGACAUCGCCAGG
X15180.1/3-118  CGCAAUUGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGGUCAUUUCCAGG
X15181.1/3-118  CGCAAUCGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGUGAGAGUAGGUCAUUUCCAGG
X02241.1/3-119  CGAAAUAGCGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGACAUCGCCAGG
#=GC SS_cons    >>>>>..>><<<.<<..<.<<...<<....>>.....>>.>.>>.>>>.>>>>>>>>>

X00930.1/3-118  C
X05041.1/3-118  C
X15180.1/3-118  C
X15181.1/3-118  C
X02241.1/3-119  C
#=GC SS_cons    .
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln56.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln56.fa

X65710.1/35-152   GGGUGCGAUCAUACCAGCACUAAUGCACCGGAUCCCAUCAGAACUCCGCAGUUAAG
X15199.1/158-276  AGGUGCGAUCAUACCAGCACUAAUGCACCGGAUCCCAUCAGAACUCCGCAGUUAAG
X00377.1/2-120    UGGUGCGGUCAUACCAGCGCUAAUGCACCGGAUCCCAUCAGAACUCCGCAGUUAAG
X56490.1/1-119    GGGUGCGAUCAUACCAGCACUAAUGCACCGGAUCCCAUCAGAACUCCGCAGUUAAG
X13040.1/1-118    .GGUUCAAUCAUACCGACACUAAUGCACCGGAUCCCAUCAGAACUCCGCAGUUAAG
#=GC SS_cons      <<<<<<<<<....<<.<<<<<...<<..<<<<<<......>>..>>>>..>>....

X65710.1/35-152   CGUGCUUGGGCGAGAGUAGUACUAGGAUGGGUGACCUCCCGGGAAGUCCUCGUGUU
X15199.1/158-276  CGUGCUUGGGCGAGAGUAGUACUAGGAUGGGUGACCUCCUGGGAAGUCCUCGUGUU
X00377.1/2-120    CGCGCUUGGGCCAGAACAGUACUGGGAUGGGUGACCUCCCGGGAAGUCCUGGUGCC
X56490.1/1-119    CGUGCUUGGGCGAGAGUAGUACUAGGAUGGGUGACCCCCUGGGAAGUCCUUGUGUU
X13040.1/1-118    CGUGCUUGGGCGAGAGCAGUACUAGGAUGGGUGACCUCCUGGGAAGUCCUCGUGUU
#=GC SS_cons      >>>>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>>>>>

X65710.1/35-152   GCACCC.
X15199.1/158-276  GCACCUC
X00377.1/2-120    GCACCCC
X56490.1/1-119    GCACCCC
X13040.1/1-118    GAACCCU
#=GC SS_cons      >>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln57.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln57.fa

X75615.1/8-118  AGUGAUGAGUAUGGCAAAGAGGUCA.ACCCGUUC.CAUACCGAACACGGAAGUUAAGC
M36159.1/2-116  .CAGGUGGUGAUGGCGGAAAGGUCACACCCGAACACAUCCCGAACUCGGAAGUUAAGC
Z11816.1/1-116  CCUGGUGGCGAUGGCGAGAAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGC
M58416.1/2-116  .CAGGUGGCGAUGGCGGAAAGGUCACACCCGAACACAUCCCGAACUCGGAAGUUAAGC
X05525.1/1-116  UUUGGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUACCGAACACGGUAGUUAAGC
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>....>

X75615.1/8-118  UCUUUAGCGCCGAUGGUAGUUGG.GGGCUUCCCCCUGUGAGAGUAGGACGUCGCUA..
M36159.1/2-116  UUUCCAGCGCCGAUGGUAGUUGG.GGGUUUCCCCCUGCGAGAGUAGGACGUUGCCGGG
Z11816.1/1-116  UUCUCAGCGCCGAUGGUAGUUGGGGCAU.UGCCCCUGCGAGAGUAGGACGCUGCCAGG
M58416.1/2-116  UUUCCAGCGCCGAUGGUAGUUGG.GGGUUUCCCCCUGCGAGAGUAGGACGCUGCCGGG
X05525.1/1-116  UCUUCAGCGCCGAUGGU.GAGUGGGGGCUUCCCCCUGUGAGAGUAGGACGCCGCCAAG
#=GC SS_cons    >>>>..>><<<.<<..<.<<....<<....>>.....>>.>.>>.>>>.>>>>>>>>>

X75615.1/8-118  .
M36159.1/2-116  C
Z11816.1/1-116  C
M58416.1/2-116  C
X05525.1/1-116  C
#=GC SS_cons    .
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln58.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln58.fa

X01002.1/1-119    GUUUACGACCAUAUCACGUUGAAUAUACCGGUUCUCGUCCGAUCACCGAAGUCAAG
M13619.1/1-119    GCCUAGGACCAUAUCACGUUGAAUGCACCGGUUCUCGUCCGAUCACCGAAGUUAAG
X01534.1/1-119    GCCUACGGCCAUACCACGUUGAAAACACCGGUUCUCGUCUGAUCACCGAAGUUAAG
AJ132198.1/1-116  GUCUACGGCCAUAUCACGUUGAAAACACCGGUUCUCGUCCGAUCACCGAAGUUAAG
X00993.1/1-119    GCUUACGGCCAUAUCACGCUGAAUACACCGGUUCUCGUCCGAUCACCGAAGUUAAG
#=GC SS_cons      <<<<<<<<<....<<.<<<<<...<<..<<<<<<......>>..>>>>..>>....

X01002.1/1-119    CAGCGUCGAGCCUAGUNAGUACUUGGAUGGGUGACCGCCUGGGAAUACUAGGUGCC
M13619.1/1-119    CAACGUCGAGCCCGGUUAGUACUUGGAUGGGUGACCGCCUGGGAAUACCGGGUGUU
X01534.1/1-119    CAACGUAGGGCCUGCCCAGUACUUGGAUGGGUGACCGCCUGGGAACAGCAGGUGUU
AJ132198.1/1-116  CAACGUCGAGCCCGGUUAGUACUUGGAUGGGUGACCGCCUGGGAAUACCGGGUGCU
X00993.1/1-119    CAACGUAGAGCCUAGUCAGUACUUGGAUGGGUGACCGCCUGGGAAUACUAGGUGCU
#=GC SS_cons      >>>>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>>>>>

X01002.1/1-119    GUAGACU
M13619.1/1-119    CUAGGCC
X01534.1/1-119    GUAGGCU
AJ132198.1/1-116  GUAG...
X00993.1/1-119    GUAAGCA
#=GC SS_cons      >>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln59.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln59.fa

M10817.1/1-119  GCCUACGGCCAUACCACCCUGAACACGCCCGAUCUCGUCU.GAUCUCGGAAGCUAAGC
M16174.1/3-119  UACGGCGGCCAUAGCGGCGGGGAAACACCCGGUCCCAUGCCGAACCCGGAAGUUAAGC
D00058.1/1-118  AGGAACGACCAUACCACGAUGCCAAUACCGCUUCCCGUCU.GCUCAGCGAAGUCAAGC
M33886.1/1-116  UCUGGUGGCGAUAGCAGAGAGGUCACACCCGUUCCCAUGCCGAACACGGAAGUUAAGU
M35395.1/1-119  GUCUACGACCAUACCACGUUGAAAGCACCGGUUCUCGUCC.GAUCACCGAAGUUAAGC
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>....>

M10817.1/1-119  AGGGUCGGGCCUGGUUAGUACUUGGAUGGGAGACCGCCUGGGAAUACCGGGU.GCUGU
M16174.1/3-119  CUGCCAGCGCCGAUG..GUACUGCAACC.GAGAGGCUGUGGGAG.AGUAGGACGCCGC
D00058.1/1-118  AUCGUCGGGCCCGGUUAGUACUACGGUGGGGGACCACGUUGGAAUCCCGGGU.GUUGU
M33886.1/1-116  UCUCUAGCGCCGAUG..GUAGUGUGG.ACUU.UGUCCCUGUGAG.AGUAGGACGUUGC
M35395.1/1-119  AACGUCGGGCCAGGUUAGUACUUGGAUGGGUGACCGCCUGGGAAUACCUGGU.GCCGU
#=GC SS_cons    >>>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>>.>>>>>

M10817.1/1-119  AGGCU
M16174.1/3-119  CGGAC
D00058.1/1-118  UCUU.
M33886.1/1-116  CAGGC
M35395.1/1-119  AGACA
#=GC SS_cons    >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln60.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln60.fa

X00991.1/1-118        GCCUACGACCAUACCACCAUGAAUACACCGGUUCUCGUCC.GAUCACCGA.A
X00692.1/1-119        ACAUACGACCAUAGGGUGUGGAAAACAGGGCUUCCCGUCC.GCUCAGCCGUA
AE004502.1/3179-3294  CUUGACGAUCAUAGAGCGUUGGAACCACCUGAUCCCUUCCCGAACUCAGA.A
M10438.1/2-120        UGCUACGGUCAUACCACCACGAAAGCACCCGAUCCCAUCA.GAACUCGGA.A
K03168.1/1-118        AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCU.GAUCUGCGC.A
#=GC SS_cons          <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>...

X00991.1/1-118        GUUAAGNAUGGUAGGGCCGGGUCAGUACCUGGAUGGGUGACCGCCUGGGAAC
X00692.1/1-119        CUUAAGCCACACGCCGGUGAGUUAGUAGUUGGGUGGGUGACCACCAGCGAAU
AE004502.1/3179-3294  GUGAAACGACGCAUCGCCGAUG..GUAGUGUG..GGGUCUCCCCAUGUGAG.
M10438.1/2-120        GUUAGACGUGGUUGGGCCAGAUUAGUACUGGGUUGAGGGAUCACUUGGGAAC
K03168.1/1-118        GUUAACCAGAGUGCCGCUCAGUUAGUACCACGGUGGGGGACCACGCGGGAAU
#=GC SS_cons          >>....>>>>>..>><<<.<<....<.<<.....<<....>>.....>>.>.

X00991.1/1-118        ACCCGGU.GUUGUAGGC.
X00692.1/1-119        CCUCACU.GUUGUAUGU.
AE004502.1/3179-3294  AGUAGGUCAUCGUCAAGC
M10438.1/2-120        CCCUGGU.GCUGUAGUGU
K03168.1/1-118        CCUGGGU.GCUGUGGUU.
#=GC SS_cons          .>>.>>>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln61.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln61.fa

AB001721.1/2735-2851  CCCGGUGACUAUAGAGAGAGGGCCACACCCGUUCCCAUCCCGAACACGGAAG
M34760.1/2-117        CUUGGUGACCAUAGCAAGCGUGAACCACCCGAUCCCAUCCCGAACUCGGAAG
X02024.1/3-117        U..GGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAG
X02254.1/3-118        CUUGGCGACCAUAGCGUUAUGGACCCACCUGAUUCCAUGCCGAACUCAGAAG
X05233.1/1-119        GUCUACGGCCAUACCACCGGGAAAAUACCGGUUCUCGUCC.GAUCACCGAAG
#=GC SS_cons          <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>

AB001721.1/2735-2851  UUAAGCCUCUCAUCGCUGAUG..GUACUAUG.UGGUUCGCUGCAUGGGAG.A
M34760.1/2-117        UGAAACCGCUUAGCGCCGAUGA..UAGUGUGG.CAGGU.UGCCAUGUGAA.A
X02024.1/3-117        UUAAGCUCUUCAGCGCCGAUG..GUAGUUGGG.GUGUUAGCCCCUGCAAG.A
X02254.1/3-118        UGAAACGUAAUAGCGCCGAUG..GUAGUGUG..GGGUCUCCCCAUGUGAG.A
X05233.1/1-119        UCAAGCCCGGUAGGGCCAGGUUAGUACUUGGAUGGGUGACCGCCUGGGAAUA
#=GC SS_cons          >....>>>>>..>><<<.<<....<.<<.....<<....>>.....>>.>..

AB001721.1/2735-2851  GUAGGACGUUGCCGGGU
M34760.1/2-117        GUAGGUCAUCGCMAAGC
X02024.1/3-117        GUAGGACGUUGCCAGGC
X02254.1/3-118        GUAGGACAUCGCCAGGC
X05233.1/1-119        CCUGGU.GCUGUAGACU
#=GC SS_cons          >>.>>>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln62.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln62.fa

X00501.1/7-121  .CUGGCGGCCGUAGCGCGGUGGUCCCACCUGACCCCAUGCCGAACUCAGAAGUGAAAC
X52303.1/2-118  UCCGGUGGUGAUAUCAAGAAGGCUACACCCGAUCCCAUACCGAACUCGGAAGUUAAGC
X00997.1/1-119  GCCUACGGCCAUACCAUGCUGAAUACACCCGUUCUCGUCC.GAUCACGGAAGUUAAGC
K03169.1/1-118  AUCCACGGCCAUAGGACCUUGAAAACACCGCAUCCCGUCC.GAUCUGCGCAGUUAACC
M36159.1/2-116  .CAGGUGGUGAUGGCGGAAAGGUCACACCCGAACACAUCCCGAACUCGGAAGUUAAGC
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>....>

X00501.1/7-121  GCCGUAGCGCCGAUG..GUAGUGUG..GGGUCUCCCCAUGCGAG.AGUAGGG.AACUG
X52303.1/2-118  UUCUUGGAGCCGAUG..GUACUGCCA.GGGCAACCUGGUGGGAG.AGUAGG.ACGCCG
X00997.1/1-119  AGCAUCGGGCACGGUUAGUACUUGGAUGGGUGACCGCCUGGGAAUACCGUG.U.GCAG
K03169.1/1-118  AGGGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGG.U.GCUG
M36159.1/2-116  UUUCCAGCGCCGAUG..GUAGUUGG..GGGUUUCCCCCUGCGAG.AGUAGG.ACGUUG
#=GC SS_cons    >>>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>.>.>>>>

X00501.1/7-121  CCAGAC
X52303.1/2-118  CCGGGA
X00997.1/1-119  UAGGCU
K03169.1/1-118  UGGUU.
M36159.1/2-116  CCGGGC
#=GC SS_cons    >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln63.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln63.fa

AB035926.1/5989-6104  CCUGGCGGCCUUAGCGCGGUGGUCCCACCUGACCCCAUGCCGAACUCAGAAG
X02024.1/3-117        U..GGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAG
X02631.1/2-115        GCUGGCGACCAUAGCAAGAGUGAACCACCUGAUCCCUUCCCGAACUCAGAAG
K03161.1/1-118        AUCCACGGCCAUAGGACUGUGAAAGCACCGCAUCCCGUCU.GAUCUGCGCAG
X62862.1/2-123        GGUGGCGGCCAUAGCGGCGGGGCAAUUCCUGUACCCAUCCCGAACACAGAAG
#=GC SS_cons          <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>

AB035926.1/5989-6104  UGAAACGCCGUAGCG.CCGAUG..GUAGUGUG..GGGUCUCCCCAUGCGAG.
X02024.1/3-117        UUAAGCUCUUCAGCG.CCGAUG..GUAGUUGGG.GUGUUAGCCCCUGCAAG.
X02631.1/2-115        UGAAACCUCUUCGCG.CUGAUG..GUAGUGNGG.GU..UA.CCCAUGUGAG.
K03161.1/1-118        UUAAACACAGUGCCG.CCUAGUUAGUACCAUGGUGGGGGACCACAUGGGAAU
X62862.1/2-123        AUAAGCCCGCCUGCGUUCUAUACUGUACUAAAGUAUGAGAGUCUUUGGGAAA
#=GC SS_cons          >....>>>>>..>><.<<.<<....<.<<.....<<....>>.....>>.>.

AB035926.1/5989-6104  AGUAGGG..AACUGCCAGGC
X02024.1/3-117        AGUAGG..ACGUUGCCAGGC
X02631.1/2-115        AGUAAG..UCAUCGCCAGCU
K03161.1/1-118        CCUGGG..U.GCUGUGGUU.
X62862.1/2-123        UAUGGAAC..GCUGCCACCA
#=GC SS_cons          .>>.>>..>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln64.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln64.fa

L27166.1/1-122      GUAGGCGGCCAGAGCGGUAGGGAAACACCCGUACCCAUUCCGAACACGGAAGUU
M18171.1/1-119      GGAUGCGAUCAUACCAGCACUAAAGCACCGGAUCCCAUCA.GAACUCCGAAGUU
D16558.1/6715-6832  AGGAACGGCCAUACCACGCCGAUCGCACCACAUCCCGUCC.GCUCUGUGAAGUU
X65710.1/35-152     GGGUGCGAUCAUACCAGCACUAAUGCACCGGAUCCCAUCA.GAACUCCGCAGUU
X01950.1/1-117      UGUUGUGAUGAUGGCAUUGAGGCCACACCUGUUCCCAUACCGAACACAGAAGUU
#=GC SS_cons        <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>.

L27166.1/1-122      AAGCCUACCAGCGUAUCGUGAAGUACUGGAGUGAGCGAUCCUCAGGGAACCACG
M18171.1/1-119      AAGCGUGCUUGGG.CGAGAGUAGUACUAGGAUGGGUGACCUCCUGGGAAGUCCU
D16558.1/6715-6832  AAGCGGCGUCGGG.CCAGGCUAGUACUACGGUGGGGGACCACGUGGGAAGCCCU
X65710.1/35-152     AAGCGUGCUUGGG.CGAGAGUAGUACUAGGAUGGGUGACCUCCCGGGAAGUCCU
X01950.1/1-117      AAGCUCAAUAGCA.CCGA..AAGUAGUUGGA.GGAUCUCUUCCUGCGAG.GAUA
#=GC SS_cons        ...>>>>>..>><.<<.<<....<.<<.....<<....>>.....>>.>..>>.

L27166.1/1-122      AGUC..GCCGCCUACC
M18171.1/1-119      UG..U.GUUGCAUCCC
D16558.1/6715-6832  GG..U.GCUGUUCCU.
X65710.1/35-152     CG..U.GUUGCACCC.
X01950.1/1-117      GG..ACGUCGCGAUGC
#=GC SS_cons        >>..>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln65.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln65.fa

X15199.1/158-276  AGGUGCGAUCAUACCAGCACUAAUGCACCGGAUCCCAUCA.GAACUCCGCAGUUAA
X12886.1/1-117    UGUGGUGACGAUGGCGAGAAGGAUACACCUGUUCCCAUGUCGAACACAGAAGUUAA
J01889.1/1-119    GUCUACGGCCAUACCACGUUGAAAAUACCGGUUCUCGUCC.GAUCACCGAAGUCAA
X01557.1/3-118    CUUGACGACCAUAGAGCAUUGGAACCACCUGAUCCCAUCCCGAACUCAGUAGUGAA
X52303.1/2-118    UCCGGUGGUGAUAUCAAGAAGGCUACACCCGAUCCCAUACCGAACUCGGAAGUUAA
#=GC SS_cons      <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>...

X15199.1/158-276  GCGUGCUUGGGCGAGAGUAGUACUAGGAUGGGUGACCUCCUGGGAAGUCCUCGU.G
X12886.1/1-117    GCUUCUUAGCG..CCGAGAGUAGUUGGG.GGAUCGCUCCCUGCGAG.GGUAGGACG
J01889.1/1-119    GCAACGUCGGGCGUGGUUAGUACUUAGAUGGGUGACCGCUUGGGAACACCACGU.G
X01557.1/3-118    ACGAUGCAUCGCCGAUG..GUAGUGUG..GGGUUUCCCCAUGUGAG.AGUAGGUCA
X52303.1/2-118    GCUUCUUGGAGCCGAUG..GUACUGCCA.GGGCAACCUGGUGGGAG.AGUAGGACG
#=GC SS_cons      .>>>>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>>.>

X15199.1/158-276  UUGCACCUC
X12886.1/1-117    UUGCCAUGC
J01889.1/1-119    UUGUAGAUA
X01557.1/3-118    UCGUCAAGA
X52303.1/2-118    CCGCCGGGA
#=GC SS_cons      >>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln66.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln66.fa

M19136.1/148-266  UGACUCGUUCAUACUACAGUGGCCACACCAGAUCCCAUCA.GAACUCUGAAGUUAA
X02254.1/3-118    CUUGGCGACCAUAGCGUUAUGGACCCACCUGAUUCCAUGCCGAACUCAGAAGUGAA
M35310.1/1-117    UCCGGUGGCAAUGUCGGAGGGGUCCCACCCGUUCCCAUCCCGAACACGGAAGUUAA
X00067.1/1-119    AUCUGGGGCCAUACCACAGCCGAAUCACCGCAUCCCGUUC.GAUCUGCGCAGUUAA
X02237.1/3-118    CCUGGCGACCAUAGUGUUUUGGACCCACCUGAUUCCAUUCCGAACUCAGAAGUGAA
#=GC SS_cons      <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>...

M19136.1/148-266  GCACUGUAAGGCUUGGCUAGUACUGAGGUGGGAGACCGCUCGGGAACACCAGG.U.
X02254.1/3-118    ACGUAAUAGCGCCGAUG..GUAGUGUG..GGGUCUCCCCAUGUGAG.AGUAGG.AC
M35310.1/1-117    GCCCUCCAGAGCCGAUG..GUACUCCGC.GGGGAACCGCGCGGGAG.AGUAGG.UC
X00067.1/1-119    AUGCUGUAGGGCCGAGUCAGUAGUGCGGUGGGGGACCACGCGCGAAUACUCUGGU.
X02237.1/3-118    ACGAAACAGCGUCGAUG..GUAGUGUG..GGGUUUCCCCAUGUGAG.AGUAGA.AC
#=GC SS_cons      .>>>>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>.>.

M19136.1/148-266  GAUGAGUCAU
X02254.1/3-118    AUCGCCAGGC
M35310.1/1-117    GCUGCCGGAU
X00067.1/1-119    GCCCCAGGU.
X02237.1/3-118    AUCGCCAGGC
#=GC SS_cons      >>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln67.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln67.fa

M35565.1/3-118    CUUGGCGACCAUAGCAAAUA.GGAACCACCCGACCCCAUCCCGAACUCGGUAGUGA
M34774.1/2-116    CCUGGUGGCUAUGGCGAGGA.GUCCGAACCCGAUCCCAUCCCGAACUCGGCCGUUA
X02028.1/1-117    UCUGGUGAUGAUGGCGGAGG.GGACACACCCGUUCCCAUACCGAACACGGCCGUUA
X05870.1/304-418  ..ACCCGGCCACAGUGAGCG.GGCAACACCCGGACUCAUUUCGAACCCGGAAGUUA
M36187.1/5-126    UUUGGCGGUCAUGGCGUGGGGGUUUAUACCUGAUCUCGUUUCGAUCUCAGUAGUUA
#=GC SS_cons      <<<<<<<<<....<<.<<<<.<...<<..<<<<<<.......>>..>>>>..>>..

M35565.1/3-118    AACUGUUCUGCG.CCGAUG.A..UAGUGUGG.AUACU.CUCCAUGUGAA.AGUAGG
M34774.1/2-116    AACUCCUCAGCG.CCAAUG...GUACUUCG.UCUC.AA.GACGCGGGAG.AGUAGG
X02028.1/1-117    AGCCCUCCAGCG.CCAAUG...GUACUUGC.UCCGCAGGGAGCCGGGAG.AGUAGG
X05870.1/304-418  AGCCGCUCACGUUGGUGGG.GCC.G.UGGAUACCGUGAGGAUCCGCAGCCCCACUA
M36187.1/5-126    AGUCCUGCUGCGUUGUGGGUGUGUACUGCGGUUU.UUU.GCUGUGGGAAGCCCACU
#=GC SS_cons      ..>>>>>..>><.<<.<<.....<.<<.....<<....>>.....>>.>..>>.>>

M35565.1/3-118    ..UUAUCGCCAAGA
M34774.1/2-116    ..UCGCUGCCAGGC
X02028.1/1-117    ..ACGUCGCCAGGC
X05870.1/304-418  A...GCUGGGAU..
M36187.1/5-126    UC..ACUGCCAGAC
#=GC SS_cons      ..>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln68.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln68.fa

M11538.1/4-116  CCUGAUGACCAUGGCGAACU.GGAACCACCCCUUCCCAUCCCGAACAGGGCCGUGAAA
X02022.1/3-118  CUUGGCGACCAUAGCGUUAU.GGACCCACCUGAUCCCUUGCCGAACUCAGUAGUGAAA
X16191.1/4-119  CUUGGUGGCUAUAGCGUCUG.UGACCCACCCGAUCCCAUCUCGAACUCGGCCGUGAAA
X05527.1/1-120  ACAUUCGGCCAUACUAAGUCGACAUGUACCCGAUCCCAUCCCGAACUCGGAAGUCAAG
X02024.1/3-117  U..GGUGGCGAUAGCGAAGA.GGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAG
#=GC SS_cons    <<<<<<<<<....<<.<<<<.<...<<..<<<<<<.......>>..>>>>..>>....

M11538.1/4-116  CAGUUCAGCGCCGAUGA..UAGUGCGC.AU.UCG...CGUGUGAA.AGUAGGACAUCG
X02022.1/3-118  CGUAAUAGCGCCGAUG..GUAGUGUG..GGGUCUCCCCAUGUGAG.AGUAGGACAUCG
X16191.1/4-119  CCGGACUGCGCCGAUG..GUACUAGUG.CUUCAA..GCACUGGAAGAGUAGGUCGUCG
X05527.1/1-120  UCGCUUCAGGCCGGGUUAGUACUGAGGUGAGGGAUCACUCGGGAAUCCCCGGU.GCCG
X02024.1/3-117  CUCUUCAGCGCCGAUG..GUAGUUGGG.GUGUUAGCCCCUGCAAG.AGUAGGACGUUG
#=GC SS_cons    >>>>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>>.>>>>

M11538.1/4-116  UCAGGC
X02022.1/3-118  CCAGGC
X16191.1/4-119  CCAGGC
X05527.1/1-120  AAUGU.
X02024.1/3-117  CCAGGC
#=GC SS_cons    >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln69.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln69.fa

X13005.1/1-116  UCCAGUGAUGAUGGCAAAGAGGCCACACCCGUUCCCAUGCCGAACACGGAAGUUAAGC
X06854.1/5-111  ....ACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCC.GAUCUGCGAAGUUAACC
M10435.1/2-120  UGGUGCGGUCAUACCAGCACUACUAGACCGGAUCCCAUCA.GAACUCCGAAGUUAAGC
X06098.1/1-107  UCUGGUGCUUAUGGCAUAGUGGACACACCCGUUCCCAUCCCGAACACGGAAGUUAAGC
M34759.1/7-109  ..U..GG.CCAUAGCGAGCGUGAACCACCCGAUCCCAUCCCGAACUCGGAAGUGAAAC
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>....>

X13005.1/1-116  UCUUUUGCGCCGAUG..GUAGUUGG..GGGUUUCCCCCUGUGAG.AGUAGGACGUCGC
X06854.1/5-111  AGAGUGCCGCCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGGU.GC...
M10435.1/2-120  GUGCUUGGGCCUGAAUAGUACUGGGAUGGGUGACCUCCCGGGAAGUCCGGGU.GCCGC
X06098.1/1-107  ACUAUUACGCCGACGA..UA..G....CCGCAAGGU.G....AA.AAUAGGGCAGUGC
M34759.1/7-109  CGCUUAGCGCCGAUGA..UAGUGCGA.CAGGU.UGUCGUGCGAA.AGUAGGGAAU...
#=GC SS_cons    >>>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>>.>>>>>

X13005.1/1-116  UGGGC
X06854.1/5-111  .....
M10435.1/2-120  ACCCU
X06098.1/1-107  CAGGU
M34759.1/7-109  .....
#=GC SS_cons    >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln70.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln70.fa

J01851.1/1-119  GUUGUCGGCCAUACUAUGCCUAACGCACCAGAUCCCAUCC.GAACUCUGAAGUUAAGC
S39188.1/3-117  CCUGGUGGCUUUAGCGAAGCGAUCAGACCCGAUCCCAUCCCGAACUCGGCCGUCAAAC
X06104.1/1-119  ACAGCCGUUCAUACCACACGGAGAAUACCGGAUCUCGUUC.GAACUCCGCAGUCAAGC
X52298.1/2-113  UUAGGUGCCUAUAUCGGUGGUGU.CCACCUCUUCCCAUUCCGAACAGAGAAGUUAAGC
V01347.1/3-119  UUCGGUGGUCAUAGCGUGAGGGAAACGCCCGGUUACAUUCCGAACCCGGAAGCUAAGC
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>....>

J01851.1/1-119  GGCAUAAGGCGAGGUUAGUACUUGGGUGGGGGACCGCCAGGGAAGCCCUCGU.GCUGA
S39188.1/3-117  GCUCCAGCGCCAAUG..GUACUAUG.UCUC.AA.GACCUGGGAG.AGUAGGUCGUCGC
X06104.1/1-119  CGUGUCGGGCGUGCUCAGUACUACCAUAGGGGACUGGGUGGGAAGCGUGCGU.GACGG
X52298.1/2-113  CCACCAGAGCCGAUG..GUACUGCGG.UA.ASA...CGUGGGAG.AGUAGGUCGGUGC
V01347.1/3-119  CUUACAGCGCCGAUG..GUACUGCAG.GGGGGACCCUGUGGGAG.AGUAGGACGCCGC
#=GC SS_cons    >>>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>>.>>>>>

J01851.1/1-119  CAGCU
S39188.1/3-117  CAGGC
X06104.1/1-119  CUGUU
X52298.1/2-113  CAAAU
V01347.1/3-119  CGAAC
#=GC SS_cons    >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln71.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln71.fa

X01555.1/3-118      CUUGACGAUCAUAGAGCGUUGGAACCACCUGAUCCCAUCCCGAACUCAGCAGUG
X02259.1/3-117      CCUGGCGGCCAUAGCGCCGUGGAACCACCUGAUCCCAUGCCGAACUCAGAAGUG
L27343.1/3-116      ....GCGGCCAGGGCGGAGGGGAAACACCCGUACCCAUUCCGAACACGGAAGUG
X59479.1/518-634    UUCGGUGGUCAUAGCGUUAGGGAAACGCCCGGUUACAUUUCGAACCCGGAAGCU
M27245.1/5773-5889  UUCGGUGGUCAUAGCGUUAGGGAAACGCCCGGUUACAUUCCGAACCCGGAAGCU
#=GC SS_cons        <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>.

X01555.1/3-118      AAACGACGCAUCG.CCGAUG..GUAGUGUG..GGGUUUCCCCAUGUAAG.AGUA
X02259.1/3-117      AAACGCGGUAGCG.CCGAUG..GUAGUGUGG.CA.UUU.GCCAUGUGAG.AGUA
L27343.1/3-116      AAGCCCUCCAGCGAACCAGCUAGUACUAGAGUGGGAGACCCUCUGGGAGCGCUG
X59479.1/518-634    AAGCCUUUCAGCG.CCGAUG..GUACUGCAG.GGGGGACCCUGUGGGAG.AGUA
M27245.1/5773-5889  AAGCCUUACAGCG.CCGAUG..GUACUGCAG.GGGGGACCCUGUGGGAG.AGUA
#=GC SS_cons        ...>>>>>..>><.<<.<<....<.<<.....<<....>>.....>>.>..>>.

X01555.1/3-118      GG..UCAUCGUCAGGC
X02259.1/3-117      GG..ACACUGCCAGGC
L27343.1/3-116      GUUC..GCCGCC....
X59479.1/518-634    GG..ACGCCGCCGAAC
M27245.1/5773-5889  GG..ACGCCGCCGAAC
#=GC SS_cons        >>..>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln72.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln72.fa

X01501.1/2-116    UCUGGUGGCCAAAGCACGAGCAAAACACCCGAUCCCAUCCCGAACUCGGCCGUUAA
X02260.1/3-117    CUUAGCGACAAUAGUGCUGUAGACCCACCUGAUCCCAUUCCGAACUCAGUAGUGAA
Z49275.1/645-762  AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCC.GAUCUGCGCAGUUAA
X01484.1/2-120    GCGUACGGCCAUACUACCGGGAAUACACCUGAACCCGUUC.GAUUUCAGAAGUUAA
M58416.1/2-116    .CAGGUGGCGAUGGCGGAAAGGUCACACCCGAACACAUCCCGAACUCGGAAGUUAA
#=GC SS_cons      <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>...

X01501.1/2-116    GUGCCGUAGCGCCAAUG..GUACUGCG.UCA.AAA.GACGUGGGAG.AGUAGGUCA
X02260.1/3-117    ACGCAGUAGCGCCGAUG..GUAGUGUGG.GAGU..UCCCAUGUGAG.AGUAGGACA
Z49275.1/645-762  CCAGAGUGCCGCCCAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUGGGU.G
X01484.1/2-120    GCCUGGUCAGGCCCAGUUAGUACUGAGGUGGGCGACCACUUGGGAACACUGGGU.G
M58416.1/2-116    GCUUUCCAGCGCCGAUG..GUAGUUGG..GGGUUUCCCCCUGCGAG.AGUAGGACG
#=GC SS_cons      .>>>>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>>.>

X01501.1/2-116    CCGCCAGAC
X02260.1/3-117    UUGCUAAGC
Z49275.1/645-762  CUGUGGUU.
X01484.1/2-120    CUGUACGCU
M58416.1/2-116    CUGCCGGGC
#=GC SS_cons      >>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln73.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln73.fa

X05233.1/1-119   GUCUACGGCCAUACCACCGGGAAAAUACCGGUUCUCGUCC.GAUCACCGAAGUCAAG
X02128.1/24-139  G...GCGGCCAGAGCGGUGAGGUUCCACCCGUACCCAUCCCGAACACGGAAGUUAAG
M28193.1/1-119   AGUUACGGCCAUACCUCAGAGAAUAUACCGUAUCCCGUUC.GAUCUGCGAAGUUAAG
X06848.1/1-119   AUCUGCGGCCAUACCGCGAUGAACACACCGCGUCUCGUCC.GAUCCGCGAAGUUAAG
X06577.1/4-117   CCUGGUGGCCCAAGUGAGGGGGCUGCACCCGAUCCCAUCCCGAACUCGGCCGUGAAA
#=GC SS_cons     <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>....

X05233.1/1-119   CCCGGUAGGG.CCAGGUUAGUACUUGGAUGGGUGACCGCCUGGGAAUACCUGG..U.
X02128.1/24-139  CUCACCUGCGUUCUGGUCAGUACUGGAGUGAGCGAUCCUCUGGGAAAUCCAGUUC..
M28193.1/1-119   CUCUGAAGGG.CGUCGUCAGUACUAUAGUGGGUGACCAUAUGGGAAUACGACG..U.
X06848.1/1-119   CAUCGCAGGG.GCCAGAGAGUAUUGCCGUGGGUGACCAGGCGAGAACACUGUGC.U.
X06577.1/4-117   ACCCUCAGCG.CCGAUG..GUACUGCG.UCU.UAA.GGCGCGGAAG.AGUAGG..UC
#=GC SS_cons     >>>>>..>><.<<.<<....<.<<.....<<....>>.....>>.>..>>.>>..>.

X05233.1/1-119   GCUGUAGACU
X02128.1/24-139  GCCGCCC...
M28193.1/1-119   GCUGUAGCUU
X06848.1/1-119   GCCGCAGGU.
X06577.1/4-117   GCCGCCAGG.
#=GC SS_cons     >>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln74.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln74.fa

X01000.1/1-121  ACGUACGGCCAUAUCCGAGACACGCGUACCGGAACCCAUUCCGAAUUCCGAAGUCAAG
L08503.1/3-117  CUUGGUGGUUAUGGCGGAAC.GCCUGCACCCGAUCCCAUCCCGAACUCGGCCGUGAAA
M21086.1/8-123  ..ACCCGGCCAUAGCGGCCG.GGCAACACCCGGACUCAUGUCGAACCCGGAAGUUAAG
X05041.1/3-118  CUUGGCGACCAUAGUGUUGU.GGACCCACCUGACUCUAUGCCGAACUCAGAAGUGAAA
X05528.1/1-121  ACAUUCGGCCAUACUUGGUAGAUAUGCGCCUUAUCCCAUCCCGAACUGAGAAGCUAAG
#=GC SS_cons    <<<<<<<<<....<<.<<<<.<...<<..<<<<<<.......>>..>>>>..>>....

X01000.1/1-121  CGUCCGCGAG.UUGGGUUAGUAGUCUGGUGAGGGAUCACAGGCGAACCCCCAA.U.GC
L08503.1/3-117  CGUUCCAGCG.CUGAUG..GUACUUUG.UCU.UAA.GGCACGGGAG.AGUAAG.UCGC
M21086.1/8-123  CCGGCCGCGUUGGGGGAUGCUG.UGGGGUCCGCGAGGCCCCGCAGCGCCCCCAA..GC
X05041.1/3-118  CGUAAUAGCG.CCGAUG..GUAGUGUG..GGGCUUCCCCAUGUGAG.AGUAGG.ACAU
X05528.1/1-121  UCUCCAUAGG.CCCAGGGAGUACUGCGGUCAGGGAUGACGCUGGAAAUCUGGG.U.GC
#=GC SS_cons    >>>>>..>><.<<.<<....<.<<.....<<....>>.....>>.>..>>.>>.>.>>

X01000.1/1-121  UGUACGUC
L08503.1/3-117  UGCCAGGU
M21086.1/8-123  CGGGAU..
X05041.1/3-118  CGCCAGGC
X05528.1/1-121  UGAAUGUU
#=GC SS_cons    >>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln75.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln75.fa

J01872.1/1-119            GUUGGUGGCCAUACUAAGCCUAAAGCACCGGAUCCCAUUC.GAACUCC
AJ235270.1/260875-260989  CUUGGUGGUCAUAGCAUGAGUGAAACACACGAUCCCAUCCCGAACUCG
M33886.1/1-116            UCUGGUGGCGAUAGCAGAGAGGUCACACCCGUUCCCAUGCCGAACACG
X06835.1/1-119            GCUUACGGCCAUAUGACGUUGAAAACACCGGUUCUCGUCC.GAUCACC
X02250.1/3-118            UCUGGUGAUAAUAGCAUUGUGGAACCACCUGAUCCCAUCCCGAACUCA
#=GC SS_cons              <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>

J01872.1/1-119            GAAGUUAAGCGGCUUAAGGCGAGGUUAGUACUAAGGUGGGGGACCGCU
AJ235270.1/260875-260989  AACGUGAAACCUCAUAGCGCUAAUG..GUACUAUG.UCA.UAA.GCCA
M33886.1/1-116            GAAGUUAAGUUCUCUAGCGCCGAUG..GUAGUGUGG.ACUU.UGUCCC
X06835.1/1-119            GAAGUUAAGCAACAUCGAGCCUAGUUAGUACUUAGAUGGGUGACCGCU
X02250.1/3-118            GAAGUGAAACGCAAUUGCGCCGAUG..GUAGUGUG..GGGUCUCCCCA
#=GC SS_cons              >..>>....>>>>>..>><<<.<<....<.<<.....<<....>>...

J01872.1/1-119            UGGGAAGUCCUCGU.GUUGACAACC
AJ235270.1/260875-260989  UGGGAG.AGUAAGUCGCUGCCAAGC
M33886.1/1-116            UGUGAG.AGUAGGACGUUGCCAGGC
X06835.1/1-119            UGGGAACCCUAGGU.GCUGUAAGCA
X02250.1/3-118            UGUGAG.AGUAGGUCAUUGCCAGGC
#=GC SS_cons              ..>>.>..>>.>>>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln76.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln76.fa

M25115.1/1-122  GCUGACGGCCAUACCGUGUCGAAUG.CACCGGAUCUCUUCU.GACCUCCGAAGUUAAG
X62861.1/3-124  .UUAGCGGCCAUGGCGGCAGGGUUAACUCCUGUACCCAUCCCGAACACAGAAGAUAAG
M25202.1/1-119  GUAUACGGCCAUACUAGGUUGGAAA.CACAUCAUCCCGUUC.GAUCUGAUAAGUAAAU
X62860.1/3-123  .UUGGCGGCCAUGGCGGCGGGGUAA.CUCCUGUACCCAUCCCGAACACAGCAGAUAAA
X02235.1/3-118  CCUGGCGACCAUAGUGUUUUGGACC.CACCUGAUUCCAUUCCGAACUCAGAAGUGAAA
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<.<..<<<<<<.......>>..>>>>..>>....

M25115.1/1-122  CGGCACAGGG.CCCGGAUAGUACUGGGGUGGGGGACCGCCCGGGAAGUCCUUAGGGU.
X62861.1/3-124  CCUGCCAGCGUUGUAUACGGUACUAAAGUGCGAGAGCCUUUGGGAACUAUACUCC...
M25202.1/1-119  CGACCUCAGG.CCUUCCAAGUACUCUGGUUGGAGACAACAGGGGAACAUAGGG...U.
X62860.1/3-123  CCCGCCCGCGUUCCGUACGGUACUAAAGUGCGCGAGCCUUUGGGAACUGCGGAUA...
X02235.1/3-118  CGAAAUAGCG.CCGAUG..GUAGUGUG..GGGUUUCCCCAUGUGAG.AGUAGG...AC
#=GC SS_cons    >>>>>..>><.<<.<<....<.<<.....<<....>>.....>>.>..>>.>>...>.

M25115.1/1-122  GCUGUCAGCU
X62861.1/3-124  GCUGCUGAUC
M25202.1/1-119  GCUGUAUACU
X62860.1/3-123  GCUGCCAGCU
X02235.1/3-118  AUCGCCAGGC
#=GC SS_cons    >>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln77.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln77.fa

X05233.1/1-119    GUCUACGGCCAUACCACCGGGAAAAUACCGGUUCUCGUCC.GAUCACCGAAGUCAA
M35563.1/5-120    CCUGGUGUCCAUAGAGCACUGGAACCACCUGAUCCCAUCCCGAACUCAGAAGUGAA
M59339.1/3-119    UUCGGUGGUCAUAGCGUGAGGGAAACGCCCGGUUACAUACCGAACCCGGAAGCUAA
X59479.1/518-634  UUCGGUGGUCAUAGCGUUAGGGAAACGCCCGGUUACAUUUCGAACCCGGAAGCUAA
X05534.1/1-118    AGGAACGGCCAUACCACGCCGAUCGCACCAUAUCCCGUCC.GCUCUGUGAAGUUAA
#=GC SS_cons      <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>...

X05233.1/1-119    GCCCGGUAGGGCCAGGUUAGUACUUGGAUGGGUGACCGCCUGGGAAUACCUGGU.G
M35563.1/5-120    ACGGUGCAUCGCCGAUG..GUAGUGUG..GGGCCUCCCCAUGUGAG.AGUAGGUCA
M59339.1/3-119    GCCUCACAGCGCCGAUG..GUACUGCAG.GGGGGACCCUGUGGGAG.AGUAGGACG
X59479.1/518-634  GCCUUUCAGCGCCGAUG..GUACUGCAG.GGGGGACCCUGUGGGAG.AGUAGGACG
X05534.1/1-118    GCGGCGUCGGGCCAGGCUAGUACUACGGUGGGGGACCACGUGGGAAGCCCUGGU.G
#=GC SS_cons      .>>>>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>>.>

X05233.1/1-119    CUGUAGACU
M35563.1/5-120    ACGCCAGGC
M59339.1/3-119    CCGCCGAAC
X59479.1/518-634  CCGCCGAAC
X05534.1/1-118    CUGUUCCU.
#=GC SS_cons      >>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln78.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln78.fa

M33887.1/1-111          UAAGGUGGUUAUUGCGGCGGGGCUCGACCUCUUCCCAUCCCGAACAGAGU
U01070.1/190-289        AGUAACA...AUAGCAAAAGGGAU.CACCUGAUACCAUUCCGAACUCAGU
X01544.1/1-118          AGCUACGGCCAUACAUAGAUGAAAAUACCGGAUCCCGUCC.GAUCUCCGA
AL139074.2/44743-44859  GUCCGUGAUUAUACAGAUGUGGAAACGCCUUGCUCCAUCCCGAACCAAGA
X15245.1/36-152         UGCGGUGGCAAUGGCAAGAAGGAUACACCUGUUCCCAUGCCGAACACAGU
#=GC SS_cons            <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>.

M33887.1/1-111          AGUUAAGCCCGCCUGCGCAGAUG..GUACUGCAGU.U......AUGUGGG
U01070.1/190-289        AGUUAAGCCUUUUUACGCCGAAAA..UACUAGA...A........AUAGG
X01544.1/1-118          AGUCAAGCAUCUAAUGGCGACGUCAGUACUGUGAUGGGGGACCGCACGGG
AL139074.2/44743-44859  AGCUAAGCACAUCGUGGGUGAUGA..UACUACGC.CUUACUGGCAGGGGG
X15245.1/36-152         AGUUAAGCUUCUUAACGCCGA..AAGUAGUUGG.UGGGAAACUGCCUGCG
#=GC SS_cons            .>>....>>>>>..>><<<.<<....<.<<.....<<....>>.....>>

M33887.1/1-111          AG.AGUAUGUCGUCGCCUUUC
U01070.1/190-289        AA.AAUAGGA.A..GUUACUC
X01544.1/1-118          AAUACGUCGU.GCUGUAGUU.
AL139074.2/44743-44859  AA.AGUAGCUCAUUGCGGACU
X15245.1/36-152         AG.GAUAGGAAGCUGCCGCGC
#=GC SS_cons            .>..>>.>>>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln79.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln79.fa

M34759.1/7-109      ..U..GG.CCAUAGCGAGCG.UGAACCACCCGAUCCCAUCCCGAACUCGGAAGU
U18089.1/3485-3600  UCUGGCGGCCAUAGCGCAGU.GGAACCACCCCUUCCCAUCUCGAACAGGACCGU
Z11818.1/3-116      U..GGUGGCGAUGGCGAGAA.GGUCACACCCGUUCCCAUACCGAACACGGAGGU
Z50065.1/3-120      UUCGGUGGUCACAGCGGUAGGGGAAACGCCCGGUCCCAUUCCGAACCCGGAAGC
M10202.1/3-117      G.CUACGUUCAUACCACCAC.GAAAGCACCCGAUCCCAUCA.GAACUCGGAAGU
#=GC SS_cons        <<<<<<<<<....<<.<<<<.<...<<..<<<<<<.......>>..>>>>..>>

M34759.1/7-109      GAAACCGCUUAGCGCCGAUGA..UAGUGCGA.CAGGU.UGUCGUGCGAA.AGUA
U18089.1/3485-3600  GAAACGCUGCAGCGCCUAUGA..UAGUUGA..GGGUCUCCCUCCGCGAA.AGUC
Z11818.1/3-116      UAAGCUUCUCAGCGCCGAUG..GUAGUUGGG.GCAU.UGCCCCUGCGAG.AGUA
Z50065.1/3-120      UAAGCCCACCAGCGCCGAUG..GUACUGCACCC.GAAGGGGUGUGGGAG.AGUA
M10202.1/3-117      UAAACGUGGUUGGGCUUGAUUAGUACUGGGUUGAGGGAUCACCUGGGAACCCCG
#=GC SS_cons        ....>>>>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.

M34759.1/7-109      GGGAAU........
U18089.1/3485-3600  GGUCACCGCCAGAC
Z11818.1/3-116      GGACGUUGCCAGGC
Z50065.1/3-120      GGACACCGCCGAAC
M10202.1/3-117      AGU.GACGUAG...
#=GC SS_cons        >>>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln80.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln80.fa

Z35330.1/6121-6235  CCUGGUGGUUUUAGCGAAGAGCCUCAACCCGAUCCCAUCCCGAACUCGGCCGUU
X12886.1/1-117      UGUGGUGACGAUGGCGAGAAGGAUACACCUGUUCCCAUGUCGAACACAGAAGUU
X00575.1/1-121      AUCCACGGCCAUAGGACACAGAAAACAUCGCAUCCCGUCC.GAUCUGCGCAAUC
X00377.1/2-120      UGGUGCGGUCAUACCAGCGCUAAUGCACCGGAUCCCAUCA.GAACUCCGCAGUU
X62865.1/3-123      .UUGGCGGUCAUGACGGCAGGGUAACUCCUGUACCCAUUCCGAACACAGCAGAU
#=GC SS_cons        <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>.

Z35330.1/6121-6235  AAACUCUUCAGCG.CCAAUG..GUACUAUGG.CU.UAA.GCCCUGGGAG.AGUA
X12886.1/1-117      AAGCUUCUUAGCG...CCGAGAGUAGUUGGG.GGAUCGCUCCCUGCGAG.GGUA
X00575.1/1-121      AAGCUGUGUACCG.CCCAGUCAGUACCGGAGUGGGGGACCAUCCGGGAAUCCUG
X00377.1/2-120      AAGCGCGCUUGGG.CCAGAACAGUACUGGGAUGGGUGACCUCCCGGGAAGUCCU
X62865.1/3-123      AAGCCUGCCCGUGUUCCUUACUGUACUGAAGUGUGCGAGCCUUCGGGAACUCUG
#=GC SS_cons        ...>>>>>..>><.<<.<<....<.<<.....<<....>>.....>>.>..>>.

Z35330.1/6121-6235  GG...UCGCUGCCAGGC
X12886.1/1-117      GG...ACGUUGCCAUGC
X00575.1/1-121      CCAGGU.GCUGUGGUU.
X00377.1/2-120      GG...U.GCCGCACCCC
X62865.1/3-123      GAUC...GCUGCCAACU
#=GC SS_cons        >>...>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln81.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln81.fa

M32519.1/4-118  CCUGGCGUCCAUGGAGGAGGGGGCACAC.CUGAUCCCAUUCCGAACUCGGA.AGUUAA
Z50067.1/4-120  GUCGGUGGCGAUAGCGGGGAGGGUCCGC.CCGGUCCCAUUCCGAACCCGGU.AGCUAA
X00757.1/2-119  CCUGGUGUCUAUGGCGGUAUGGAACCACUCUGACCCCAUCCCGAACUCAGUU.GUGAA
M34773.1/1-114  .CUGGUGGCCAUUGCGAGGAGCCCCAAU.UCGAUCUCACUCCGAACUCGGC.CGUUAA
X01003.1/1-119  GUUUACGACCAUACUACGUUGAAUACAC.CGGUUCUCGUCC.GAUCACCGA.AGUUAA
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<...<<<<<<.......>>..>>>>...>>...

M32519.1/4-118  GCCCUCCAUCGCCGAUGA..UACUGCGG.G..GUAGCUCGUGGGAA.AGUAGGCCGAC
Z50067.1/4-120  GCUCCCCAGCGCUGAUG..GUACUGCACUC.GGUAGGGUGUGGGAG.AGUAAGACACC
X00757.1/2-119  ACAUACCUGCGGC.AACGA.UAGCUCCC.GGGUAGCCGGUCGCUAA.AAUAGCUCGAC
M34773.1/1-114  ACUCCUCAGCGCCGAUG..GUACUAUG.UCUC.AA.GACCUGGGAG.AGUAGGUCGCU
X01003.1/1-119  GCAACGUCGGGCUUGGUUAGUACUUGGAUGGGAGACCGCCUGGGAAUACCAGGU.GUC
#=GC SS_cons    .>>>>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>>.>>>

M32519.1/4-118  GCCAGGA
Z50067.1/4-120  GCCGACA
X00757.1/2-119  GCCAGGU
M34773.1/1-114  GCCAGGC
X01003.1/1-119  GUAGGCU
#=GC SS_cons    >>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln82.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln82.fa

AJ131595.1/3-115  CCUGAUGACCAUAGCGAUUUGGUACCACUCCUUCCCAUCCCGAACAGGACAGUGAA
M60936.1/3-119    UUCGGCGGCCAUAGCGAGAGGGAAACGCCCGGUCACAUUCCGAACCCGGAAGCUAA
X06578.1/1-116    UCCGGUGACGAUAGCGAGAAGGUCACACCCGUUCCCAUACCGAACACGGAAGUGAA
X02627.1/4-118    CCUGGUGGUCAUCGCGGGGCGGCUGCACCCGUUCCCUUUCCGAACACGGCCGUGAA
X62864.1/3-123    UCUGGCAGCCAUAGCGGCAGGUGUAAUCCUGUACCCAUCCCGAACACAGUAGAUAA
#=GC SS_cons      <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>...

AJ131595.1/3-115  ACGAAUUUGCG.CCGAUG.A..UAGUGC...GGGU.UCCC.GUGUGAA.AGUAGG.
M60936.1/3-119    GACUCUCUGCG.CCGAUG...GUACUGCAG.GGGGGACCCUGUGGGAG.AGUAGG.
X06578.1/1-116    GCUUCUCAGCG.CCGACG...GUAGUUCGG.GGCUGCCCUCCCGUGAG.AGUAGG.
X02627.1/4-118    ACGCCCCAGCG.CCAAUG...GUACUUCG.UCUC.AA.GACGCGGGAG.AGUAGG.
X62864.1/3-123    GCCUGCCCGCGUUCCUUGCCUGUACUGAAGUGUGCGAGC.UUCGGGAACUCUGGAU
#=GC SS_cons      .>>>>>..>><.<<.<<.....<.<<.....<<....>>.....>>.>..>>.>>.

AJ131595.1/3-115  .UCAUCGUCAGGC
M60936.1/3-119    .ACACCGCCGGAC
X06578.1/1-116    .ACGUUGCCGGC.
X02627.1/4-118    .UCGCUGCCAGGU
X62864.1/3-123    C..GU.GCCAUAU
#=GC SS_cons      .>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln83.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln83.fa

X05233.1/1-119    GUCUACGGCCAUACCACCGGGAAAAUACCGGUUCUCGUCC.GAUCACCGAAGUCAA
X07692.1/700-821  UACGGCGGUCAUAGCGGCGGGGUCACACCCGGUCUCGUUUCGACCCCGGAAGUUAA
X52049.1/2-120    UGGUUCGUUCAUACCUAGGCUAUUGCGCCGGAUCCCAUCA.GACCUCCGAAGCUAA
X62860.1/3-123    .UUGGCGGCCAUGGCGGCGGGGUAACUCCUGUACCCAUCCCGAACACAGCAGAUAA
AJ131593.1/3-115  CCUGAUGACCAUAGCGAGUCGGUCCCACCCCUUCCCAUCCCGAACAGGACCGUGAA
#=GC SS_cons      <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>...

X05233.1/1-119    GCCCGGUAGGG.CCAGGUUAGUACUUGGAUGGGUGACCGCCUGGGAAUACCUGG..
X07692.1/700-821  GCCCGCCAGCGAUCCCGGUUGUACUGCCCUCCGGGAGGGGGCGGGAAGCCGGGGAC
X52049.1/2-120    AGGCCUGUGGG.CGAGAAUAGUACUGGAAUGGGUGACCUUCCGGGAAGUCCUCG..
X62860.1/3-123    ACCCGCCCGCGUUCCGUACGGUACUAAAGUGCGCGAGCCUUUGGGAACUGCGGAUA
AJ131593.1/3-115  ACGACUCUACG.CCGAUGA..UAGUGCG.....GAUUCCCGUGUGAA.AGUAGG..
#=GC SS_cons      .>>>>>..>><.<<.<<....<.<<.....<<....>>.....>>.>..>>.>>..

X05233.1/1-119    U.GCUGUAGACU
X07692.1/700-821  ..GCCGCCGGCC
X52049.1/2-120    U.GACGAACCCA
X62860.1/3-123    ..GCUGCCAGCU
AJ131593.1/3-115  UAAUCGUCAGGC
#=GC SS_cons      >.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln84.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln84.fa

U28505.1/6807-6921  CCUGGUGGUCAUGGCGGGGCGGCCGCACCCGUUCCCAUUCCGAACACGGCCGUG
X02235.1/3-118      CCUGGCGACCAUAGUGUUUUGGACCCACCUGAUUCCAUUCCGAACUCAGAAGUG
AJ131599.1/3-114    CCUGACGACCAUAGCGAGGUGGUACCACUCCUUCCCAUCCCGAACAGGACAGUG
M36306.1/1-119      GGUUACGGCCAUACCUAGCAGAAAGCACCCCAUCUCGUCC.GAUCUGGGAAGUU
L08503.1/3-117      CUUGGUGGUUAUGGCGGAACGCCUGCACCCGAUCCCAUCCCGAACUCGGCCGUG
#=GC SS_cons        <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>.

U28505.1/6807-6921  AAACGCCCCUGCGCCAAUG..GUACUUCG.UCU.UAA.GACGCGGGAG.AGUAG
X02235.1/3-118      AAACGAAAUAGCGCCGAUG..GUAGUGUG..GGGUUUCCCCAUGUGAG.AGUAG
AJ131599.1/3-114    AAACGCCUUUGCGCCGAUGA..UAGUGC...GGGU.UCCC.GUGUGAA.AGUAG
M36306.1/1-119      AAACUGCUAUGGGCGUGGUUAGUACUGCGGUGGGGGACCACGCGGGAAUACCAC
L08503.1/3-117      AAACGUUCCAGCGCUGAUG..GUACUUUG.UCU.UAA.GGCACGGGAG.AGUAA
#=GC SS_cons        ...>>>>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>

U28505.1/6807-6921  GUCGCUGCCAGGU
X02235.1/3-118      GACAUCGCCAGGC
AJ131599.1/3-114    GUCAUCGUCAGG.
M36306.1/1-119      GU.GCUGUAAUCU
L08503.1/3-117      GUCGCUGCCAGGU
#=GC SS_cons        >>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln85.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln85.fa

X52052.1/4-118      ..GUUCCAUCAUACCAUGCCUACUACGCCGCAUCCCAUCA.GAACUGCGA.AGC
X05053.1/3-118      CCUGGCGGCCAUGGCGAACCGGAACCACCCGAUCCCAUCUCGAACUCGGA.AGU
J01888.1/1-119      GUCUACGGCCAUACCACGUUGAAAAUACCGGUUCUCGUCC.GAUCACCGA.AGU
X00687.1/1-119      ACAUACGACCAUAGGGUGUGGAGAACAGGGCUUCCCGUCC.GCUCAGCCGUACU
U18089.1/3485-3600  UCUGGCGGCCAUAGCGCAGUGGAACCACCCCUUCCCAUCUCGAACAGGAC.CGU
#=GC SS_cons        <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>...>>

X52052.1/4-118      UAAGCGGCAUUGGGCCAGAAUAGUACUGGGAUGGGUGACCUCCCGGGAAGUCCU
X05053.1/3-118      GAAACGGUUCAGCGCCGAUGA..UAGUGUG..GGGCCUCCCCAUGUGAA.AGUA
J01888.1/1-119      CAAGCAACGUCGGGCGUGGUUAGUACUUAGAUGGGUGACCGCUUGGGAACACCA
X00687.1/1-119      UAAGCCACACGCCGGUAGGUUAGUAGUAUGGUGGGUGACCACAUGCGAAUCCCU
U18089.1/3485-3600  GAAACGCUGCAGCGCCUAUGA..UAGUUGA..GGGUCUCCCUCCGCGAA.AGUC
#=GC SS_cons        ....>>>>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.

X52052.1/4-118      GGU.GUGGAACC..
X05053.1/3-118      GGUCACUGCCAGGC
J01888.1/1-119      CGU.GUUGUAGACA
X00687.1/1-119      ACU.GUUGUAUGU.
U18089.1/3485-3600  GGUCACCGCCAGAC
#=GC SS_cons        >>>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln86.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln86.fa

L27169.1/1-121  GUAGGCGGCCAGAGCGGUAGGGAAACACCCGUACCCAUUCCGAACACGGAAGUUAAGC
M34762.1/3-116  .UUGGUGACCAUAGCGAGCGUGACCCACCCGAUCCCAUCCCGAACUCGGAAGUGAAAC
M34911.1/4-118  UAUAACGGUCAUAGCGGAGGAGCCACAUCCGAUCCCGUCCCGAUCUCGGAAAUUAAGC
L27236.1/1-122  GUAGGCGGCCAGAGCGGUAGGGAAACACCCGUACCCAUUCCGAACACGGAAGUUAAGC
Z50054.1/4-120  GUCGGUGGCGAUAGCGGUGGGGAAACGCCCGGUCCCUUUCCGAACCCGGAAGCUAAGC
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>....>

L27169.1/1-121  CUACCAGCGUAUCGUGAAGUACUGGAGUGAGCGAUCCUCUGGGAACCACGAGUC..GC
M34762.1/3-116  CGCUUAGUG.CCGAUGA..UAGUGUGG.CAAUU.UGCCAUGCGAA.AGUAGGG.A.AU
M34911.1/4-118  CCUCCAGCGAUACCCUAAGUACUGCCA.UU......UGGUGGGAACAGGGUGAC..GC
L27236.1/1-122  CUACCAGCGUAUCGUGAAGUACUGGAGUGAGCGAUCCUCUGGGAACCGCGGUUC..GC
Z50054.1/4-120  CUGCCAGCG.CCGAUG..GUACUGUACUC.GAUAGGGUGUGGGAG.AGUAGG..ACAC
#=GC SS_cons    >>>>..>><.<<.<<....<.<<.....<<....>>.....>>.>..>>.>>..>.>>

L27169.1/1-121  CGCCUAC.
M34762.1/3-116  UGCMAAA.
M34911.1/4-118  UGUUGAUC
L27236.1/1-122  CGCCUGCC
Z50054.1/4-120  CGCCGACA
#=GC SS_cons    >>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln87.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln87.fa

M16531.1/2-121  CCUCGGGACCAUAGCGGAGGGGAAACACCCGGUUUCCAUUCCGAACCCGGCAGUUAAG
M36154.1/1-117  UCUGGUGAUGAUGGCAUAGAGGUAACACUCCUU.UCCAUUCCGAACAGGACAGUUAAG
Z50076.1/4-120  GUCGGUGGCGACAGCGGGGAGGGUCCGCCCGGU.CCCAUACCGAACCCGGAAGCUAAG
M11544.1/4-118  CCUGGUGGCCAUUGCGAGGAGCCUGAACCCGAU.CCCAUCCCGAACUCGGCCGUUAAA
X01555.1/3-118  CUUGACGAUCAUAGAGCGUUGGAACCACCUGAU.CCCAUCCCGAACUCAGCAGUGAAA
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<.<.......>>..>>>>..>>....

M16531.1/2-121  CCCUCCAGCGCCGAUGA.UACUGUGCCGGGCGAACGGCACGGGAAAGUAGGUCGUCCC
M36154.1/1-117  GUCUAUAGCGCCGAUG.GUACUGCA.UGGGAGACU.GUGUGGAAGAGUAGGACGUCGC
Z50076.1/4-120  CUCCCCAGCGCCGAUG.GUACUGCAC.CCGGUGGG.GUGUGGGAGAGUAGGACACCGC
M11544.1/4-118  CUCCUCAGCGCCGAUG.GUACUAUG.UCU.UAA.G.ACCUGGGAGAGUAGGUCGCUGC
X01555.1/3-118  CGACGCAUCGCCGAUG.GUAGUGUG..GGGUUUCC.CCAUGUAAGAGUAGGUCAUCGU
#=GC SS_cons    >>>>>..>><<<.<<...<.<<.....<<....>>......>>.>.>>.>>>.>>>>>

M16531.1/2-121  GGGGG
M36154.1/1-117  CAGGU
Z50076.1/4-120  CGACA
M11544.1/4-118  CAGGC
X01555.1/3-118  CAGGC
#=GC SS_cons    >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln88.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln88.fa

X06849.1/1-119  AUCUGCGGCCAUACCGCGAUGAACCCUCCGCGUCUCGUCC.GAUCCGCGC.AGAUAAG
M36154.1/1-117  UCUGGUGAUGAUGGCAUAGAGGUAACACUCCUUUCCAUUCCGAACAGGAC.AGUUAAG
X12886.1/1-117  UGUGGUGACGAUGGCGAGAAGGAUACACCUGUUCCCAUGUCGAACACAGA.AGUUAAG
M19950.1/1-120  GGUUGCGGCCAUAUCUAGCAGAAAGCACCGUUUCCCGUCC.GAUCAACUGUAGUUAAG
D10530.1/1-120  AGCUACGGCCAUAUCCAGAUGAAAAUAAGACUUCCCGUCC.GAUCAGUCCUAUUCAAG
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>...>>....

X06849.1/1-119  CAUCGCAGGGGCCAGA.GAGUAUUGACGUGGGUGACCAGUCGAGAACACUGUGCU.GC
M36154.1/1-117  GUCUAUAGCGCCGAUG...GUACUGCA.UGGGAGACUGUGUGGAAG.AGUAGG.ACGU
X12886.1/1-117  CUUCUUAGCG..CCGA.GAGUAGUUGGG.GGAUCGCUCCCUGCGAG.GGUAGG.ACGU
M19950.1/1-120  CUGCUAAGAGCCUGACCGAGUAGUGUAGAGGGCGACCAUACGCGAAACUCAGG.U.GC
D10530.1/1-120  CAUCUGAGAGCCUUACUAAGUACUAUAGUGGGUGACCAUAUGGGAACUGAAGG.U.GC
#=GC SS_cons    >>>>>..>><<<.<<.....<.<<.....<<....>>.....>>.>..>>.>>.>.>>

X06849.1/1-119  CGCAGGU.
M36154.1/1-117  CGCCAGGU
X12886.1/1-117  UGCCAUGC
M19950.1/1-120  UGCAAUC.
D10530.1/1-120  UGUAGUU.
#=GC SS_cons    >>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001|BRAliBaseII/data-set1/rRNA/unaligned/aln89.fa
#=GF ID  5S_rRNA|BRAliBaseII/data-set1/rRNA/unaligned/aln89.fa

M76574.1/4-118    UCUGGUGGCCAUGGCGGCAGCAAAUCACCCGAUCCCAUGCCGAACUCGGCCGUCAA
M58384.1/1-118    AUCCACGGCCAUAGGACUCUGAAAGCACCGCAUCCCGUCC.GAUCUGCGCAGUUAA
M34772.1/1-114    .CUGGUGGCCAUUGCGAGGAGCCUGAACCCGACUCCACUCCGAACUCGGCCGUUAA
X01004.1/1-119    GUUUACGACCAUACCAUGCUGAAUAUACCGGUUCUCGUCC.GAUCACCGAAGUCAA
X16225.1/825-943  GCUUACGACCAUAUCACGUUGAAUGCACGCCAUCCCGUCC.GAUCUGGCAAGUUAA
#=GC SS_cons      <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>..>>...

M76574.1/4-118    AUGCCCCAGCGCCCAUGA..UACUCUGC.CUC.AA.GGCACGGAAA.AGUCGGUCG
M58384.1/1-118    CCAGAGUGCCGCCUAGUUAGUACCACGGAGGGGGACCACGCGGGAAUCUUGGGU.G
M34772.1/1-114    ACUCCUCAGCGCCGAUG..GUACUAUG.UCUC.AA.GACCUGGGAG.AGUAGGUCG
X01004.1/1-119    GCAGCAUAGGGCCCGGUUAGUACUUGGAUGGGAGACCGCCUGGGAAUACCGGGU.G
X16225.1/825-943  GCAACGUUGAGUCCAGUUAGUACUUGGAUCGGAGACGGCCUGGGAAUCCUGGAU.G
#=GC SS_cons      .>>>>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.>>>.>

M76574.1/4-118    CCGCCAGAU
M58384.1/1-118    CUGUGGUU.
M34772.1/1-114    CUGCCAGGU
X01004.1/1-119    UUGUAGGCA
X16225.1/825-943  UUGUAAGCU
#=GC SS_cons      >>>>>>>>.
//
