# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln1.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln1.fa

M83762.1/1031-1093      GCUUUAAAAGCUUUG..CU..GAAGCAACGGCCUUGUAAGUCGUAGA.AA
AC008670.6/83725-83795  ACUUUUAAAGGAUAAC.AGC.CAUCCGUUGGUCUUAGGCCCCAAAAA.UU
Z82044.1/16031-16103    GCGGUUGUGGCGAAGU.GGUUAACGCACCAGAUUGUGGCUCUGGCACUCG
AE004843.1/4972-4900    GCUCAUGUAGCUCAGUUGGU.AGAGCACACCCUUGGUAAGGGUGAGGUCA
AB042432.1/14140-14072  GUUUCUGUAGUUGAA..UU..ACAACGAUGAUUUUUCAUGUCAUUGG.UC
#=GC SS_cons            <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<

M83762.1/1031-1093      AC...UAUAC...GUUUUAAAGCU
AC008670.6/83725-83795  UUGGUGCAACUCCAAAUAAAAGUA
Z82044.1/16031-16103    UGGGUUCGAUUCCCAUCAAUCGCC
AE004843.1/4972-4900    GCGGUUCAAAUCCGCUCAUGAGCU
AB042432.1/14140-14072  GCAGUUGAAUGCUGUGUAGAAAUA
#=GC SS_cons            <<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln2.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln2.fa

AE008857.1/222-150        GUCCCCUUCGUCUAGAGGCCCAGGACACCGCCCUUUCACGGCGGUAA.
AC009461.5/128651-128579  GUUUCCGUGGUGUAGUGGUU.AUCACAUCCGCCUAACACGCGGAAGGC
X02217.1/416-488          GCCCCCAUCGUCUAGUGGUUUAGGACAUCUCUCUUUCAAGGAGGCAG.
AF347015.1/1604-1672      CAGAGUGUAGCUUAACAC...AAAGCACCCAACUUACACUUAGGAGA.
M83758.1/322-390          GGUAAAGUGGUCUAAUAU..UAGGAUAUAGGGCUCAUGCCCCUAAGG.
#=GC SS_cons              <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>....

AE008857.1/222-150        CAGGGGUUCGAAUCCCCUAGGGGACG
AC009461.5/128651-128579  CCCCGGUUCAAUCCCGGGCGGAAACA
X02217.1/416-488          CGGGGAUUCGAAUUCCCCUGGGGGUA
AF347015.1/1604-1672      UUUCAACUUAAC.UUGACCGCUCUGA
M83758.1/322-390          CGCCA.CGCGUAA.UGGCCUUUAUCU
#=GC SS_cons              .<<<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln3.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln3.fa

X01647.1/2451-2378    CGCGGAGUAGAGCAGUCUGGUAGCUCGCAAGGCUCAUAACCUUGAGGUCAUA
X12977.1/475-548      CGGUGAUUAGCGCAGCCCGGUAGCGCAUCUGGUUUGGGACCAGAGGGUCAAA
X02173.1/441-512      AUAGAUAUAAGUUAAGU.GGUAAACUGAAUGUCUUCCACACAUUGAU.UGUG
M68929.1/41917-41989  GGGUAAUUAGCUCAGUU.GGUAGAGUGCCUCGUUUACACCGAGAGAGUCAGC
Z28209.1/4569-4498    GCCCUUUUGGCCAAGU..GGUAAGGCAUCGCACUCGUAAUGCGGGGAUCGUG
#=GC SS_cons          <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<

X01647.1/2451-2378    GGUUCAAAUCCUGUCUCCGCCA
X12977.1/475-548      GGUUCGAAUCCUUUAUCACCGA
X02173.1/441-512      AGUUCGAUUCUCACUAUCUAGA
M68929.1/41917-41989  GGUUCAAGUCCGUUAUUACCCA
Z28209.1/4569-4498    GGUUCAAUUCCCACAGAGGGCA
#=GC SS_cons          <<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln4.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln4.fa

AF347015.1/1604-1672  CAGAGUGUAGCUUAAC.AC...AAAGCACCCAACUUACACUUAGGAGA.UUU
AP002983.1/121-48     GCGGAUGUAGCCAAGU.GGAUCAAGGCAGUGGAUUGUGAAUCCACCAUGCGC
AF490528.1/4630-4697  GAGGUGUUAGUAAA...AC...AUUAUAUAAUUUUGUCAAAGUUAAGU.UAC
X12890.1/1972-2045    GGGCUAUUAGCUCAGUUGGUU.AGAGCAUACCCUUGAUAAGGGUAAGGUCGC
AB042809.1/7700-7764  CACUAUGAAGCUA.........AGAGCGUUAACCUUUUAAGUUAAAGUUAGA
#=GC SS_cons          <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.....<<

AF347015.1/1604-1672  CAACUUAAC.UUGACCGCUCUGA
AP002983.1/121-48     GGGUUCAAUUCCCGUCGUUCGCC
AF490528.1/4630-4697  AAGUGAAAGUCCUGUACACCUCA
X12890.1/1972-2045    UAGUUCAAGUCUAGCAUGGCCCU
AB042809.1/7700-7764  GACCUUAAA.AUCUCCAUAGUGA
#=GC SS_cons          <<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln5.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln5.fa

M68929.1/50694-50622  GCCCGCGUAGCUCAGAU..GGU..AGAGCAUUCCCAUGGUAAGGGAAAG...
X12631.1/3132-3200    GAGCUUGC.CCCUAAA...GUU..AAGGUGUCUAGCUGAUAAUUAGAUU...
M91385.1/1046-1118    AGGGGUAUAGUUCAAUC..GGU..AGAACACCGGACUUCAAAUCCGGGU...
X02167.1/268-340      CUAAAUAUAUUUCAAU...GGUUAGCAAAAUACGCUUGUGGUGCGUUAA...
M16863.1/577-660      GCCUUGGUGGUGAAAUGGUGGUA.GACACGCGAGACUCAAAAUCUCGU.GCU
#=GC SS_cons          <<<<<<<..<<<<............>>>>.<<<<<.......>>>>>.....

M68929.1/50694-50622  .......GCCUCCGGUUCAAGUCCGGUCGUAGGCU
X12631.1/3132-3200    .........UAAGGGUUAAAUUCCCUUCAAGCUCU
M91385.1/1046-1118    .......GUUGUGGGUUCAAGUCCUGCUACCCCUG
X02167.1/268-340      .......A.UCUAAGUUCGAUUCUUAGUAUUUACC
M16863.1/577-660      AAACAGCG.AGGAGGUUCGAGUCCUCUUCAAGGCA
#=GC SS_cons          ..........<<<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln6.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln6.fa

Z99104.2/165829-165901  GCUUCCAUAGCUCAGCAGGU..AGAGCACUUCCAUGGUAAGGAAGAG...
L07095.1/5086-5018      GAGGUCUUAGCUUAA..UU...AAAGCAAUUGAUUUGCAUUCAAUAG...
X07380.1/111-198        GGAGGUAUGGCUGAGU.GGCUUAAGGCAUUGGUUUGCUAAAUCGAC.AUA
AJ404228.1/1559-1631    GUUAUAUUAGCUUAAUUGGU..AGAGCAUUCGUUUUGUAAUCGAAAG...
M68929.1/41917-41989    GGGUAAUUAGCUCAGUUGGU..AGAGUGCCUCGUUUACACCGAGAGA...
#=GC SS_cons            <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.....

Z99104.2/165829-165901  ..............GUCAGCGGUUCGAGCCCGCUUGGAAGCU
L07095.1/5086-5018      ..............A.UGUAGGAUGAAGUCUUACAGUCCUUA
X07380.1/111-198        CAAGAAGAUUGUAU..CAUGGGUUCGAAUCCCAUUUCCUCCG
AJ404228.1/1559-1631    ..............GUUUGGGGUUCAAAUCCCUAAUAUAACA
M68929.1/41917-41989    ..............GUCAGCGGUUCAAGUCCGUUAUUACCCA
#=GC SS_cons            .................<<<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln7.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln7.fa

AP002983.1/121-48     GCGGAUGUAGCCAAGU..GGAUCAAGGCAGUGGAUUGUGAAUCCACCAUGCG
M20969.1/1-74         GCGCUUUUAGUUCAGUUCGGU..AGAACGUAGGUCUCCAAAACCUAAUGUCG
X12631.1/3132-3200    GAGCUUGC.CCCUAAA..GUU..AAGGUGUCUAGCUGAUAAUUAGAUU..UA
M22010.1/2934-3006    GCGCUUUUAGUUCAAUU.GGU..AGAACGUAGGUCUCCAAAACCUGAUGUAG
Z11874.1/40212-40285  CGGGAUGUAGCGCAGUUUGGU..AGCGCAUUGCAUUUGGGAUGCAAGGGUCG
#=GC SS_cons          <<<<<<<..<<<<...........>>>>.<<<<<.......>>>>>.....<

AP002983.1/121-48     CGGGUUCAAUUCCCGUCGUUCGCC
M20969.1/1-74         UAGGUUCAAAUCCUACAGAGCGUG
X12631.1/3132-3200    AGGGUUAAAUUCCCUUCAAGCUCU
M22010.1/2934-3006    UAGGUUCGAAUCCUACAGAGCGCG
Z11874.1/40212-40285  CAGGUUCGAAUCCUGUCAUCCCGA
#=GC SS_cons          <<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln8.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln8.fa

AB042240.3/6758-6687      UGGGGCGUGGCCAAGUGGUAAGGCAGCGGGUUUUGGUCCCGUUACUCG
M83756.1/1869-1933        GCUUAAGUAGUUUAG.GG.AAAACAUAAGAUUUUCAUUCUUAAGU.CA
J01404.1/5140-5204        AUCUAUAUAGUAUAAA...AGUAUAUUUGACUUCCAAUCAUAAGG.UC
AC008345.3/147874-147803  AGCAGAGUGGCGCAGUGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCC
X03126.1/364-434          AAGAGUAUAGUUUAAAGGUAAAACAGAAAGCUUCAACCUUUAAUU.UC
#=GC SS_cons              <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<

AB042240.3/6758-6687      GAGGUUCGAAUCCUUCCGUCCCAG
M83756.1/1869-1933        GAA.AGCAG...UUCUCUUAAGUU
J01404.1/5140-5204        UAUU.AAUU..AAUAGUAUAGAUA
AC008345.3/147874-147803  GAGGAUCGAAACCUUGCUCUGCUA
X03126.1/364-434          UUAGUUCGAGUCUAAGUGCUCUUG
#=GC SS_cons              <<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln9.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln9.fa

AE008886.1/9662-9735  AGGCUUGUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCGGU
M68929.1/50694-50622  GCCCGCGUAGCUCAGAUGGU.AGAGCAUUCCCAUGGUAAGGGAAAGGCCUCC
X05914.1/400-337      AAUGAAUUGCCUGAUA.....AAAGGGUUAUCUUGAUAGGGUAAAUUAUGUA
AE008731.1/705-777    GGGUCGUUAGCUCAGUUGGU.AGAGCAGUUGACUUUUAAUCAAUUGGUCGCA
J01436.1/1456-1522    GUCCCGAUAGUAUAA..AA..AUUACUCUGGUCUUGUAAACCAAAAA.UGAA
#=GC SS_cons          <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<

AE008886.1/9662-9735  GGUUCAAGUCCACUCAGGCCUA
M68929.1/50694-50622  GGUUCAAGUCCGGUCGUAGGCU
X05914.1/400-337      G..GAUU...CUACAUUCAUUG
AE008731.1/705-777    GGUUCGAAUCCUGCACGACCCA
J01436.1/1456-1522    GA.GUCAG.UCUUCUCAGGACA
#=GC SS_cons          <<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln10.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln10.fa

U18917.1/50408-50336  UUCCUCGUGGCCCAAU.GGUCACGGCGUCUGGCUACGAACCAGAAGAUUCCA
M83761.1/538-601      AAAAAAGUAGUUUAAUUUA..AGAACGAUAGGUUGUGGGGCUAUUAG.CGGU
X52392.1/2273-2345    CAAGGCGUAGCUAUAACUUC.AAAGCAUUCAGCUUACACCUGAAAGA.UACC
L23320.1/77-10        ACUCUUUUAGUAUAA..AU..AGUACCGUUAACUUCCAAUUAACUAG.UUUU
Z11880.1/281-353      GCCCCCGUAGCCCAAU.GGAUAAGGCGUUCGCUUCCUAAGCGAAAGAUUGCG
#=GC SS_cons          <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<

U18917.1/50408-50336  GGUUCAAG.UCCUGGCGGGGAAG
M83761.1/538-601      ...GUUA.....ACCCUUUUUUA
X52392.1/2273-2345    CUCAACAGACAAGGUCGCCUUGA
L23320.1/77-10        GACAACAU..UCAAAAAAGAGUA
Z11880.1/281-353      GGUUCGAG.UCCCGCCGGAGGUA
#=GC SS_cons          <<........>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln11.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln11.fa

X03240.1/1388-1326  GGUCUUAUAGUCAAUA.....AUGAUAUCAAACUGCAAUUUUGAAGG.AGUAA.
X15245.1/236-309    CGGGAAGUGGCUCAGUUUGGUAGAGCACCUGGUUUGGGACCAGGGGGUCGCAGG
L07095.1/5327-5261  GGUAAAAUGGCUGAG......UAAGCAUUAGACUGUAAAUCUAAACA.CAGAGG
X17658.1/140-72     AAGGUCUUAGCUUAA...UU.AAAGUAUUUGUUUUGCAUACAGAAGA.UGUGGG
J01372.1/99-171     GCUUCAGUAGCUCAGUA.GGAAGAGCGUCAGUCUCAUAAUCUGAAGGUCGAGAG
#=GC SS_cons        <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<

X03240.1/1388-1326  AUUU....UUACUAAGACUU
X15245.1/236-309    UUCAAAUCCUGUCUUCCCGA
L07095.1/5327-5261  UUUAAAUCCUCUUUUUACCA
X17658.1/140-72     GUAGUGUCCUGCAGAUCUUA
J01372.1/99-171     UUCGAACCUCUCCUGGAGCA
#=GC SS_cons        .......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln12.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln12.fa

X61064.1/63-135     GCAUCCAUAGCUCAGUUGGU..AGAGCAACAGACUCUUAAUCUGUGG.......
D00554.1/73-143     GCAGGUGUAGUUUAAU.GGU..AGAACUUCAGCCUUCCAAGCUGAUU.......
M21542.1/51-134     GUCAGGAUGGCCGAGU.GGUCUAAGGCGCCAGACUCAAGUUCUGGU.CUUCGAG
X12975.1/234-306    GUGGCUAUAGCUCAGUUGGU..AGAGUCCCGGAUUGUGAUUCCGGUU.......
X03715.1/1086-1158  GGUUCAGUAGCUCAGUUGGU..AGAGCAUUUGAUUGAAGCUCAAAGU.......
#=GC SS_cons        <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.........

X61064.1/63-135     .....GUCCACGGUUCGAGCCCGUGUGGGUGUA
D00554.1/73-143     .....G.UGAGGGUUCGAUUCCCUUCACCUGCU
M21542.1/51-134     AGAGGG.CGUGGGUUCAAAUCCCACUUCUGACA
X12975.1/234-306    .....GUCGCGAGUUCAAGCCUCGUUAGCCACC
X03715.1/1086-1158  .....GUCGGCAGUUCAAUUCUGUCCUGAACCA
#=GC SS_cons        ........<<<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln13.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln13.fa

X61674.1/1095-1008        GGAGAGAUGGCUGAGU.GGACUAAAGCGGCGGAUUGCUAAUCCGUU.G
Y00430.1/2429-2358        GGGGGUGUAGCUCAGU.GGU..AGAGCGCAUGCUUUGCAUGUAUGAG.
X12977.1/94-167           GCGCCCGUAGCUCAGCUGGAU.AGAGCGCUGCCCUCCGGAGGCAGAG.
X54300.1/29-102           GGGUUAUUAGCUCAGUUGGUU.AGAGCACACCCCUGAUAAGGGUGAG.
AJ271079.2/114727-114656  UCCUCAGUAGCUCAGU.GGU..AGAGCGGUCGGCUGUUAACCGAUUG.
#=GC SS_cons              <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>...

X61674.1/1095-1008        UACAAUUUUUUUGUAC..CGAGGGUUCGAAUCCCUCUCUUUCCG
Y00430.1/2429-2358        ................GUCUUGGGUUCAAUCCCCAGCAUCUCCA
X12977.1/94-167           ................GUCACAGGUUCGAAUCCUGUCGGGCGCA
X54300.1/29-102           ................GUCCCUGGUUCAAAUCCAGGAUAACCCA
AJ271079.2/114727-114656  ................GUCGUAGGUUCGAAUCCUACUUGGGGAG
#=GC SS_cons              ...................<<<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln14.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln14.fa

K01553.1/1-73       GCGGAUUUAGCUCAGUU.GGG..AGAGCGCCAGACUGAAGAUCUGGAGGUCCUG
X61068.1/1189-1262  CGCGGGAUAGAGCAGUCUGGU..AGCUCGUCGGGCUCAUAACCCGAAGGUCGAU
AE008857.1/222-150  GUCCCCUUCGUCUAGA..GGCCCAGGACACCGCCCUUUCACGGCGGUAA.CAGG
X00229.1/1945-2016  UCCCUGGUGGUCUAGU..GGUU.AGGAUUCGGCGCUCUCACCGCCGCGG.CCCG
M83756.1/1738-1803  GCAUAUAUAGUAAACA..AU...AUUAUAUUUGCCUUCCAAGCAAAAGU.CCUA
#=GC SS_cons        <<<<<<<..<<<<...........>>>>.<<<<<.......>>>>>.....<<<

K01553.1/1-73       UGUUCGAUCCACAGAAUUCGCA
X61068.1/1189-1262  GGUUCAAAUCCAUCUCCCGCAA
AE008857.1/222-150  GGUUCGAAUCCCCUAGGGGACG
X00229.1/1945-2016  GGUUCGAUUCUCGGUCAGGGAA
M83756.1/1738-1803  AU.AAA...AUUAGUGUAUGCU
#=GC SS_cons        <<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln15.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln15.fa

AC122544.1/63069-62986  GUCAGGAUGGCCGAGU.GGUCUAAGGCGCCAGACUCAAGUUCUGGU.CCU
AB013373.1/3754-3825    GCGGAAGUAGUUCAGU.GGU..AGAACACCACCUUGCCAAGGUGGGG...
M17309.1/99-171         GGGAUUGUAGUUUAAU.GGUU.AGAGCACCGCCCUGUCACGGCGGAA...
X16643.1/1078-1151      GCUCGAUUAGCUCAGCUGGUU.AGAGCAUGCGGCUGUUAACCGCAAG...
AF490529.1/11834-11766  GUUCUUGUAGUUGAA..UG...ACAACGAUGGUUUUUCAUAUCAUUA...
#=GC SS_cons            <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.....

AC122544.1/63069-62986  CGUGAGAGGG.CGUGGGUUCAAAUCCCACUUCUGACA
AB013373.1/3754-3825    .........GUCGCGGGUUCGAAUCCCGUCUUCCGCU
M17309.1/99-171         .........GUUGCGGGUUCGAGUCCCGUCAGUCCCG
X16643.1/1078-1151      .........GUCGUAGGUUCGAUCCCUACAUCGAGCG
AF490529.1/11834-11766  .........G.UCAUGGUUAGAUUCCAUGUAAGAAUA
#=GC SS_cons            ............<<<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln16.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln16.fa

X12631.1/11945-12013  GAUUAAAGUAGUUUAA..GA...AAAGCAUCAGCCUGUGGAGCUGAAGA.CG
J04815.1/952-1020     GCUCCUAU.AGUUGAA..CU...ACAACAAGAGCUUUUCACGCUCUAAG.UU
M21373.1/208-280      GGGGGUAU.AGCUCAGUUGGU..AGAGCGUUGCUUUUGCAUAGCAGACGUCA
M10217.1/9797-9871    CACUAAGA.AGCUAAAUAGGGCAUUAGCGACAGCCUUUUAAGCUGUAGAUUG
J01390.1/12259-12330  GGGGCUAU.AGUUUAACUGGU..AAAACGGCGAUUUUGCAUAUCGUUAU.UU
#=GC SS_cons          <<<<<<<...<<<<..........>>>>.<<<<<.......>>>>>.....<

X12631.1/11945-12013  CCAGUAAACU.CUGGCUUAAAUCC
J04815.1/952-1020     UGAGUUAAAAUCUCAAUAGAAGCU
M21373.1/208-280      GCAGUUCGAGUCUGCUUAUCUCCA
M10217.1/9797-9871    GUGACUCCCAACCACCCUUAAUGA
J01390.1/12259-12330  CAGGAUCGAGUCCUGAUAACUCCA
#=GC SS_cons          <<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln17.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln17.fa

K01553.1/1-73         GCGGAUUUAGCUCAGUU.GGG..AGAGCGCCAGACUGAAGAUCUGGAG....
AY017179.1/1528-1601  GGGCCGGUAGCUCAGCCUGGG..AGAGCGUCGGCUUUGCAAGCCGAAG....
X70810.2/60996-61067  GGCGGCAUGGCCAAGC..GGU..AAGGCAGAAGAUUGCAAAUCUUUUA....
Z54587.1/126-45       GGUAGCGUGGCCGAGC..GGUCUAAGGCGCUGGAUUUAGGCUCCAGU..CUC
X61065.1/77-164       GGAGCGAUACUCAAGA..GGCCGAAGAGGGCGCACUGCUAACGCGUUAGACG
#=GC SS_cons          <<<<<<<..<<<<...........>>>>.<<<<<.......>>>>>......

K01553.1/1-73         ...........GUCCUGUGUUCGAUCCACAGAAUUCGCA
AY017179.1/1528-1601  ...........GCCCCGGGUUCGAAUCCCGGCCGGUCCA
X70810.2/60996-61067  ...........UUCCCCAGUUCGAUUCUGGGUGUCGUCU
Z54587.1/126-45       ..UUCG..GAGG.CGUGGGUUCGAAUCCCACCGCUGCCA
X61065.1/77-164       GUUAACCCCGUG.CGAGGGUUCAAAUCCCUCUCGCUCCG
#=GC SS_cons          ..............<<<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln18.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln18.fa

M68929.1/15170-15243  GCAUUCUUAGCUCAGUUGGAUAGAGCAACAACCUUCUAAGUUGAAGGUCACA
X55514.2/4257-4189    AGAGAUUUAAGUUAA..UA..AAACUGAAAACCUUCAAAGUUUUAAA.UAAG
X59571.1/319-390      GCCGUGAUAGUAUAGU.GGU.AGUACAUCAGAUUGUGGCUCUGUUGACCCUU
J01440.1/394-465      AGGGGUAUAACUCAGC.GGU.AGAGUGUCACCUUGACGUGGUGGAAGUCAUC
X99772.1/7842-7915    CACUAAGAAGCUAAUAUGGGUUAAGCACCAGCCUUUUAAGCUGGAAGCAGGU
#=GC SS_cons          <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<

M68929.1/15170-15243  GGUUCAAAUCCUGUAGAAUGCG
X55514.2/4257-4189    AGUGGAACUCUCUUAGUCUUUA
X59571.1/319-390      GGUUCGAUUCCAGGUCGCGGCA
J01440.1/394-465      AGUUCGAGCCUGAUUAUCCCUA
X99772.1/7842-7915    GACUCCCAACCACCCUUAAUGA
#=GC SS_cons          <<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln19.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln19.fa

M16869.1/80-166           GGAGAGAUGGCCGAGU.GGUUGAAGGCGUAGCAUUGGAACUGCUAU.G
AC009461.5/128651-128579  GUUUCCGUGGUGUAGU.GGUU.AUCACAUCCGCCUAACACGCGGAAG.
X70810.2/2089-2011        UCCUUCGUGGUGAAAU.GGUA.AACACGUGUGAUUCAAAAUCACAU.G
X13975.1/858-928          CAUCAGAUGACUGAA..AG...UAAGUAAUGGUCUCUUAAACCAAAA.
X12890.1/1972-2045        GGGCUAUUAGCUCAGUUGGUU.AGAGCAUACCCUUGAUAAGGGUAAG.
#=GC SS_cons              <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>...

M16869.1/80-166           UAGGCUUUUGUUUAC..CGAGGGUUCGAA.UCCCUCUCUUUCCG
AC009461.5/128651-128579  ...............GCCCCCGGUUCAAU.CCCGGGCGGAAACA
X70810.2/2089-2011        C....AUAA....GCU.UGCCGGUUCGAG.UCCGGUCGAAGGUA
X13975.1/858-928          ...............AAUAGUAAAUUAACGUUUACUUCUGAUGA
X12890.1/1972-2045        ...............GUCGCUAGUUCAAG.UCUAGCAUGGCCCU
#=GC SS_cons              ..................<<<<<........>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln20.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln20.fa

X01738.1/122-190      GAUUACGAUGUAAAU.GGUUUACCCUUUGACUGCAAAUCUUAAGGAUUAG.G
L07095.1/5086-5018    GAGGUCUUAGCUUAA.UU.AAAGCAAUUGAUUUGCAUUCAAUAGA.UGUA.G
M10217.1/2136-2204    GCUUACGUAGCUUAA.GU.AAAGCACAGCACUGAAGAUGCUGAGA.UGAGCC
AC002341.3/6810-6881  GGGCAUUUGGUCUAGUGGUAUGAUUCUCGCUUAGGGUGCGAGAGGUCCCG.A
X57046.1/341-271      GGCCGCUUAGCACAU.GGCAGUGCACCACUCUCGUAAAGUGGGGGUCGCG.A
#=GC SS_cons          <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<.<

X01738.1/122-190      .UUCGAUU.CCUACGUAAUCC
L07095.1/5086-5018    GAUGAAGUCUUACAGUCCUUA
M10217.1/2136-2204    CUACGAAA.GCUCCGUAAGCA
AC002341.3/6810-6881  GUUCAAUUCUCGGAAUGCCCC
X57046.1/341-271      GUUCGAUUCUCGCAGUGGCCU
#=GC SS_cons          <.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln21.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln21.fa

X02173.1/522-593        GGAUCCAUAGCUUAAU.AGU..AAAGUCCUAUUUUGUCAUAAUAGAG...
X55339.1/30-104         CUCUCGGUAGCCAAGUUGGUUUAAGGCGCAAGACUGUAAAUCUUGAG...
K00367.1/1-82           GGCACUAUGGCCGAGU.GGUU.AAGGCGAGAGACUCGAAAUCUCUU.GGG
AC084153.1/28467-28538  AGCAGCGUGGCGCAGU.GGA..AGCGUGCUGGGCCCAUAACCCAGAG...
K00277.1/1-73           GCUGAUUUAGCUCAGUAGGU..AGAGCACCUCACUUGUAAUGAGGAU...
#=GC SS_cons            <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.....

X02173.1/522-593        ........GAUGUCAGUGCAAAUCUGAUUGGAUUCG
X55339.1/30-104         ........AUCGGGCGUUCGACUCGCCCCCGGGAGA
K00367.1/1-82           CUCUGCCCG.CGCUGGUUCAAAUCCUGCUGGUGUCG
AC084153.1/28467-28538  ........GUCGGUGGAUCGAAACCACUCGCUGCUA
K00277.1/1-73           ........GUCGGCGGUUCGAUUCCGUCAAUCAGCA
#=GC SS_cons            ...........<<<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln22.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln22.fa

AF041468.1/40566-40494  GGGGGUAUAGCUCAGUUGGU..AGAGCGCUGCCUUUGCACGGCAGAU...
X55339.1/30-104         CUCUCGGUAGCCAAGUUGGUUUAAGGCGCAAGACUGUAAAUCUUGAG...
M58306.1/1-72           GGGCUAUUAGCUCAGU.GGU..AGAGCGCGCCCCUGAUAAGGGCGAG...
X66594.1/1984-2065      GCUACUUUGGUGGAAUCGGUA.GACACGACGCACUUAAAAUGCGUU.ACU
X15768.1/211-283        GGGGGUAUAGCUCAGUUGGU..AGAGCGCUGCCUUUGCAAGGCAGUG...
#=GC SS_cons            <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.....

AF041468.1/40566-40494  .......GUCAGGGGUUCGAGUCCCCUUACCUCCA
X55339.1/30-104         .......AUCGGGCGUUCGACUCGCCCCCGGGAGA
M58306.1/1-72           .......GUCUCUGGUUCAAGUCCAGGAUGGCCCA
X66594.1/1984-2065      UAUAAGUA.UAAAAGUUCAAGUCUUUUAAGUAGCA
X15768.1/211-283        .......GUCAGCGGUUCGAGUCCGCUUACCUCCA
#=GC SS_cons            ..........<<<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln23.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln23.fa

M37162.1/1352-1420    AAGAGCUUAAGUUAA..AU..AAACUGAAAGCCUUCAAAGCUUUUU......
M10671.1/1-72         GACCUCGUGGCGCAAC.GGU.AGCGCGUCUGACUCCAGAUCAGAAG......
J01395.1/3006-3078    GGGGAUAUAGCUCAGUUGGU.AGAGCGCUGCCUUUGCAAGGCAGAU......
AB013373.1/3754-3825  GCGGAAGUAGUUCAGU.GGU.AGAACACCACCUUGCCAAGGUGGGG......
X13824.1/2-83         GCUACUUUGGUGGAAAUGGUAGACACGACACUCUUAAGAUGUGUU.AUCGCA
#=GC SS_cons          <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>........

M37162.1/1352-1420    ....A.UAAGAAUGGAAACUUCUUAGCUCUUG
M10671.1/1-72         ....GCUGCGUGUUCGAAUCACGUCGGGGUCA
J01395.1/3006-3078    ....GUCAGCGGUUCGAAUCCGCUUAUCUCCA
AB013373.1/3754-3825  ....GUCGCGGGUUCGAAUCCCGUCUUCCGCU
X13824.1/2-83         AGAUA.UGAAGGUUCAAAUCCUUUAAGUAGUA
#=GC SS_cons          .......<<<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln24.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln24.fa

X03602.1/660-731      UCCCGUAUGGUCUAGU.GGUUAGGAUACCUGGCUUUCACCCAGGAGG.CUCG
AE008886.1/9662-9735  AGGCUUGUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCGGU
D85289.1/587-657      ACUUUUAAAGGAUAAC.AGC.UAUCCAUUGGCCUUAGGAGUCAAAAA.UAUU
M16843.1/2824-2752    GCCUACUUAACUCAGU.GGUUAGAGUAUUGCUUUCAUACGGCGGGAGUCAUU
D85289.1/459-527      GUAAAUAUAGUUUAA..UU..AAAACAUUAGACUGUGAAUCUAACUA.UAGA
#=GC SS_cons          <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<

X03602.1/660-731      GGUUCGAUUCCCGGUACGGGAA
AE008886.1/9662-9735  GGUUCAAGUCCACUCAGGCCUA
D85289.1/587-657      GGUGCAACUCCAAAUAAAAGUA
M16843.1/2824-2752    GGUUCAAAUCCAAUAGUAGGUA
D85289.1/459-527      AGCUUACCACUUCUUAUUUACC
#=GC SS_cons          <<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln25.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln25.fa

J00642.1/462-533      GCCGUGAUCGUAUAGG.GGUUAGUACUCUGCGUUGUGGCCGCAGCAA.CCUC
AE004386.1/8370-8441  GCGGGCAUCGUAUAAU.GGCUAUUACCUCAGCCUUCCAAGCUGAUGA.UGCG
X04465.1/90332-90261  UCCUUAGUAGCUCAGU.GGU.AGAGCGGUCGGCUGUUAACCGAUUGGUCGUA
AE008710.1/84-156     GCCGAUAUAGCUCAGUUGGU.AGAGCAGCGCAUUCGUAAUGCGAAGGUCGUA
V00654.1/12038-12108  ACUUUUAAAGGAUAGU.AGUUUAUCCGUUGGUCUUAGGAACCAAAA..AAUU
#=GC SS_cons          <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<

J00642.1/462-533      GGUUCGAAUCCGAGUCACGGCA
AE004386.1/8370-8441  GGUUCGAUUCCCGCUGCCCGCU
X04465.1/90332-90261  GGUUCAAAUCCUACCUGAGGAG
AE008710.1/84-156     GGUUCGACUCCUAUUAUCGGCA
V00654.1/12038-12108  GGUGCAACUCCAAAUAAAAGUA
#=GC SS_cons          <<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln26.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln26.fa

M83758.1/394-459      UGAAAGCUGGCAGAG..UU...AAUGCGCUUGAUUUAGGAUCAAUUU.....
K00228.1/1-82         GGUUGUUUGGCCGAGC.GGUCUAAGGCGCCUGAUUCAAGCUCAGGU.AUC..
AF008220.1/6172-6245  GGCGGUGUAGCUCAGCUGGCU.AGAGCGUACGGUUCAUACCCGUGAG.....
V00238.1/262-333      UCCUAUAUUGUCUAGU.GGUU.AGGAUAUCCGGCUCUCACCCGGAAG.....
AF008220.1/7053-7140  GGAGAAGUACUCAAGU.GGCUGAAGAGGCGCCCCUGCUAAGGGUGUAGGUCG
#=GC SS_cons          <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.......

M83758.1/394-459      ...........A.UAAGUA.UCCA..UACUUGCUUUCAU
K00228.1/1-82         .GUAA...GAUG.CAAGAGUUCGAAUCUCUUAGCAACCA
AF008220.1/6172-6245  ...........GUCGGGGGUUCGAUCCCCUCCGCCGCUA
V00238.1/262-333      ...........G.CCCGGGUUCAAUUCCCGGUAUGGGAA
AF008220.1/7053-7140  UGUAAGCGGCG..CGAGGGUUCAAAUCCCUCCUUCUCCG
#=GC SS_cons          ..............<<<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln27.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln27.fa

AL391016.1/2459-2530    GCUCACAUGGUCCAGU.GGUU.AAGACUCAUCGUUGUGGCCGAUGCG...
J01390.1/12505-12576    UAUGUUGUCGACUAAUCGGU..AAGUCAUAAAUUUUUGGUAUUUAUA...
M86496.1/1-68           GUUAAUGUAGCUUAAA.AUU..AAAGCAAGGCACUGAAAAUGCCUAG...
AF347001.1/16015-15948  CAGAGAAUAGUUUAAA.UU...AGAAUCUUAGCUUUGGGUGCUAAUG...
X61065.1/77-164         GGAGCGAUACUCAAGA.GGCCGAAGAGGGCGCACUGCUAACGCGUUAGAC
#=GC SS_cons            <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.....

AL391016.1/2459-2530    ............ACCCAGGUUCGAUUCCUGGUGUGGGCA
J01390.1/12505-12576    ............UUGGGUGUUCGAGUCGCCCCAACAUAA
M86496.1/1-68           ............AUGAGU.AUAUUA..ACUCCAUAAACA
AF347001.1/16015-15948  ............GUGGAG.UUAAAGA.CUUUUUCUCUGA
X61065.1/77-164         GGUUAACCCCGUGCGAGGGUUCAAAUCCCUCUCGCUCCG
#=GC SS_cons            ..............<<<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln28.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln28.fa

D11467.1/6989-6916      GCAUCCAUGGCUGAAU.GGUU.AAAGCGCCCAACUCAUAAUUGGCGAA..
AC092686.3/29631-29561  GCAUUGGUGGUUCAGU.GGU..AGAAUUCUCGCCUGCCACGCGG.GAG..
X53649.1/160-231        UGGGCUAUGGUGUAAUUGGC..AGCACGACUGAUUCUGGUUCAG.UUA..
AE008874.1/15640-15730  GAAGAUCGUCGUCUCC.GGUG.AGGCGGCUGGACUUCAAAUCCA.GU.UG
X02167.1/268-340        CUAAAUAUAUUUCAAU.GGUUAGCAAAAUACGCUUGUGGUGCGU.UAA..
#=GC SS_cons            <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>.>....

D11467.1/6989-6916      ..................CUCGCGGGUUCAAUUCCUGCUGGAUGC.A
AC092686.3/29631-29561  ..................G.CCCGGGUUCGAUUCCCGGCCAAUGC.A
X53649.1/160-231        ..................G.UCUAGGUUCGAGUCCUGGUAGCCCA.G
AE008874.1/15640-15730  GGGCCGCCAGCGGUCCCG..GGCAGGUUCGACUCCUGUGAUCUUCCG
X02167.1/268-340        ..................A.UCUAAGUUCGAUUCUUAGUAUUUAC.C
#=GC SS_cons            .....................<<<<<.......>>>>>>>>>>>>..
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln29.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln29.fa

J01404.1/5140-5204        AUCUAUAUAGUAUAAA.....AGUAUAUUUGACUUCCAAUCAUAAGG.
L13782.1/442-515          GAGCUUGUAGCUCAGUGGACUAGAGCACAUGGCUACGAACCAUGGGGU
L23320.1/77-10            ACUCUUUUAGUAUAA.AU...AGUACCGUUAACUUCCAAUUAACUAG.
X52392.1/16177-16108      CAGAGAGUAGUUUAUUUG...AAAAUACCAGCUUUGGGAGCUGGAGA.
AC024877.2/101525-101454  GACUGCUUGGCGCAAUGGU..AGCGCGUUCGACUCCAGAUCGAAAGGU
#=GC SS_cons              <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>....

J01404.1/5140-5204        UCUAUU.AAUU..AAUAGUAUAGAUA
L13782.1/442-515          CGGGGGUUCGAAACCCUCCUGGCUCG
L23320.1/77-10            UUUUGACAACAU.UCAAAAAAGAGUA
X52392.1/16177-16108      UGGAGGUUUGAGCCCUCCUUUUCUGA
AC024877.2/101525-101454  UGGGCGUUCGAUCCGCUCAGUGGUCA
#=GC SS_cons              .<<<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln30.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln30.fa

AE008874.1/15640-15730  GAAGAUCGUCGUCUCC..GGUGAGGCGGCUGGACUUCAAAUCCAGU.UGG
X14848.1/2654-2728      AUUAGGGUGGCAGAGCCAAGUAAUUGCGUAAGACUUAAAACCUUGUU...
AE005497.1/10137-10064  GCAUCCGUAGCUCAGCU.GGAUAGAGUACUCGGCUACGAACCGAGCG...
J04815.1/1231-1299      CAAAGAAUAGUUUAA...GA..AAAACAACAGCUUUGGGAGUUGUAG...
D38114.1/11560-11628    GUAAAUAUAGUUUAA...CC..AAAACAUCAGAUUGUGAAUCUGAUA...
#=GC SS_cons            <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.....

AE008874.1/15640-15730  GGCCGCCAGCGGUCCCG..GGCAGGUUCGACUCCUGUGAUCUUCCG
X14848.1/2654-2728      .................CCCAGAGGUUCAAAUCCUCUCCCUAAU.A
AE005497.1/10137-10064  .................GUCGGAGGUUCGAAUCCUCCCGGAUGC.A
J04815.1/1231-1299      .................A.CGUAAGUGAAAACCUUACUUCUUUG.A
D38114.1/11560-11628    .................A.CAGAGGCUCACAACCCCUUAUUUAC.C
#=GC SS_cons            ....................<<<<<.......>>>>>>>>>>>>..
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln31.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln31.fa

M83759.1/517-582      UGUAAGAUAAUAUAAACC.AGUAUAAUUCAUUUACACUGAAUGUGUCAG.AU
X14848.1/1-67         GUUAAUGUAGCUUAUAAU.AAAGCAAAGCACUGAAAAUGCUUAGAUGGA.U.
M10217.1/2136-2204    GCUUACGUAGCUUAA.GU.AAAGCACAGCACUGAAGAUGCUGAGAUGAGCCC
D16387.1/11403-11471  AAAGAGCUAGUUAAA.AA.AUAACCCCAGAUUGUCAGACUGGAAUUAUC.UG
AJ400907.1/3795-3861  AAAAAAUUAGUUAAA.AUCAUAACAUUAGUAUGUCAAACUAAAAUUAUU.AA
#=GC SS_cons          <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>....<<<.<<

M83759.1/517-582      ..AA.U..GUCUGUCUUACUU
X14848.1/1-67         UCAA.AA..AUCCCAUAAACA
M10217.1/2136-2204    UACG.AAA.GCUCCGUAAGCA
D16387.1/11403-11471  UAACCACCCUGAUGCUCUUU.
AJ400907.1/3795-3861  .AUA.A..UUAAUAUUUUUUA
#=GC SS_cons          ........>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln32.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln32.fa

AF041468.1/40566-40494  GGGGGUAUAGCUCAGUUGGUAGAGCGCUGCCUUUGCACGGCAGAUGUCAG
D00547.1/329-401        GGGCCCUUAGCUCAGCUGGGAGAGCACCUGCCUUGCACGCAGGGGGUCGA
M19493.1/340-412        GGGGGUAUAGCUCAGUUGGUAGAGCGCUGCCUUUGCAAGGCAGAUGUCAG
M21373.1/208-280        GGGGGUAUAGCUCAGUUGGUAGAGCGUUGCUUUUGCAUAGCAGACGUCAG
X15768.1/211-283        GGGGGUAUAGCUCAGUUGGUAGAGCGCUGCCUUUGCAAGGCAGUGGUCAG
#=GC SS_cons            <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<

AF041468.1/40566-40494  GGGUUCGAGUCCCCUUACCUCCA
D00547.1/329-401        CGGUUCGAUCCCGUUAGGGUCCA
M19493.1/340-412        CGGUUCGAGUCCGCUUACCUCCA
M21373.1/208-280        CAGUUCGAGUCUGCUUAUCUCCA
X15768.1/211-283        CGGUUCGAGUCCGCUUACCUCCA
#=GC SS_cons            <<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln33.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln33.fa

AF041468.1/40566-40494  GGGGGUAUAGCUCAGUUGGUAGAGCGCUGCCUUUGCACGGCAGAUGUCAG
AF070678.1/91-163       GGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAGGUCAG
AF234285.1/261-333      GGGGCUAUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAGGUCUG
J01395.1/3006-3078      GGGGAUAUAGCUCAGUUGGUAGAGCGCUGCCUUUGCAAGGCAGAUGUCAG
AB003409.1/96-167       GGGCCCAUAGCUCAGU.GGUAGAGUGCCUCCUUUGCAAGGAGGAUGCCCU
#=GC SS_cons            <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<

AF041468.1/40566-40494  GGGUUCGAGUCCCCUUACCUCCA
AF070678.1/91-163       CGGUUCGAUCCCGCUAGGCUCCA
AF234285.1/261-333      CGGUUCGAUCCCGCAUAGCUCCA
J01395.1/3006-3078      CGGUUCGAAUCCGCUUAUCUCCA
AB003409.1/96-167       GGGUUCGAAUCCCAGUGGGUCCA
#=GC SS_cons            <<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln34.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln34.fa

AF070678.1/91-163   GGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAGGUCAGCGGU
AF083212.1/212-284  GGGGCCAUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAGGUCAGGAGU
X15768.1/211-283    GGGGGUAUAGCUCAGUUGGUAGAGCGCUGCCUUUGCAAGGCAGUGGUCAGCGGU
X51423.1/1802-1874  GGGCUUGUAGCUCAGCUGGUAGAGCGCCGCCUUUGCAAGGCGGAGGCCCUGGGU
AB003409.1/96-167   GGGCCCAUAGCUCAGU.GGUAGAGUGCCUCCUUUGCAAGGAGGAUGCCCUGGGU
#=GC SS_cons        <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.

AF070678.1/91-163   UCGAUCCCGCUAGGCUCCA
AF083212.1/212-284  UCGAUCCUCCUUGGCUCCA
X15768.1/211-283    UCGAGUCCGCUUACCUCCA
X51423.1/1802-1874  CCGAAUCCCAGCAAGUCCA
AB003409.1/96-167   UCGAAUCCCAGUGGGUCCA
#=GC SS_cons        ......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln35.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln35.fa

D00547.1/329-401    GGGCCCUUAGCUCAGCUGGGAGAGCACCUGCCUUGCACGCAGGGGGUCGACGGU
M21373.1/208-280    GGGGGUAUAGCUCAGUUGGUAGAGCGUUGCUUUUGCAUAGCAGACGUCAGCAGU
X03715.1/481-553    GGGCCCGUAGCUCAGCUGGGAGAGCACCUGCCUUGCACGCAGGGGGUCGACGGU
X51423.1/1802-1874  GGGCUUGUAGCUCAGCUGGUAGAGCGCCGCCUUUGCAAGGCGGAGGCCCUGGGU
X60981.1/3446-3518  GGAGGAUUAGCUCAGCUGGGAGAGCACUUGCCUUACAAGCAAGGGGUCGGCGGU
#=GC SS_cons        <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.

D00547.1/329-401    UCGAUCCCGUUAGGGUCCA
M21373.1/208-280    UCGAGUCUGCUUAUCUCCA
X03715.1/481-553    UCGAUCCCGUUCGGGUCCA
X51423.1/1802-1874  CCGAAUCCCAGCAAGUCCA
X60981.1/3446-3518  UCGAUCCCGUCAUCCUCCA
#=GC SS_cons        ......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln36.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln36.fa

AF070678.1/91-163   GGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAGGUCAGCGGU
AF105125.1/104-176  GGGGGUUUAGCUCAGUUGGUAGAGCGCCUGCUUUGCAAGCAGGAUGUCAGCGGU
J01395.1/3006-3078  GGGGAUAUAGCUCAGUUGGUAGAGCGCUGCCUUUGCAAGGCAGAUGUCAGCGGU
M21373.1/208-280    GGGGGUAUAGCUCAGUUGGUAGAGCGUUGCUUUUGCAUAGCAGACGUCAGCAGU
X54300.1/105-177    GGGGGUAUAGCUUAGUUGGUAGAGCGCUGCUUUUGCAAGGCAGAUGUCAGCGGU
#=GC SS_cons        <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.

AF070678.1/91-163   UCGAUCCCGCUAGGCUCCA
AF105125.1/104-176  UCGAGUCCGCUAACCUCCA
J01395.1/3006-3078  UCGAAUCCGCUUAUCUCCA
M21373.1/208-280    UCGAGUCUGCUUAUCUCCA
X54300.1/105-177    UCGAAUCCGCUUACCUCCA
#=GC SS_cons        ......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln37.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln37.fa

AY017179.1/1528-1601  GGGCCGGUAGCUCAGCCUGGGAGAGCGUCGGCUUUGCAAGCCGAAGGCCCCG
AF070678.1/91-163     GGGGCCUUAGCUCAGCU.GGGAGAGCGCCUGCUUUGCACGCAGGAGGUCAGC
AF234285.1/261-333    GGGGCUAUAGCUCAGCU.GGGAGAGCGCCUGCUUUGCACGCAGGAGGUCUGC
X03715.1/481-553      GGGCCCGUAGCUCAGCU.GGGAGAGCACCUGCCUUGCACGCAGGGGGUCGAC
AE000965.1/156-85     GGGCUCGUAGCUCAGC..GGGAGAGCGCCGCCUUUGCGAGGCGGAGGCCGCG
#=GC SS_cons          <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<

AY017179.1/1528-1601  GGUUCGAAUCCCGGCCGGUCCA
AF070678.1/91-163     GGUUCGAUCCCGCUAGGCUCCA
AF234285.1/261-333    GGUUCGAUCCCGCAUAGCUCCA
X03715.1/481-553      GGUUCGAUCCCGUUCGGGUCCA
AE000965.1/156-85     GGUUCAAAUCCCGCCGAGUCCA
#=GC SS_cons          <<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln38.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln38.fa

AF041468.1/40566-40494  GGGGGUAUAGCUCAGUUGGUAGAGCGCUGCCUUUGCACGGCAGAUGUCAG
X51423.1/1802-1874      GGGCUUGUAGCUCAGCUGGUAGAGCGCCGCCUUUGCAAGGCGGAGGCCCU
X54300.1/105-177        GGGGGUAUAGCUUAGUUGGUAGAGCGCUGCUUUUGCAAGGCAGAUGUCAG
AB003409.1/96-167       GGGCCCAUAGCUCAGU.GGUAGAGUGCCUCCUUUGCAAGGAGGAUGCCCU
L00194.1/685-756        GGGGCCAUAGCUCAGUUGGUAGAGCGCCUGCUUUGCAAGCAGGUGU.CGU
#=GC SS_cons            <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<

AF041468.1/40566-40494  GGGUUCGAGUCCCCUUACCUCCA
X51423.1/1802-1874      GGGUCCGAAUCCCAGCAAGUCCA
X54300.1/105-177        CGGUUCGAAUCCGCUUACCUCCA
AB003409.1/96-167       GGGUUCGAAUCCCAGUGGGUCCA
L00194.1/685-756        CGGUUCGAAUCCGUCUGGCUCCA
#=GC SS_cons            <<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln39.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln39.fa

AF105125.1/104-176  GGGGGUUUAGCUCAGUUGGUAGAGCGCCUGCUUUGCAAGCAGGAUGUCAGCGGU
J01395.1/3006-3078  GGGGAUAUAGCUCAGUUGGUAGAGCGCUGCCUUUGCAAGGCAGAUGUCAGCGGU
X03715.1/481-553    GGGCCCGUAGCUCAGCUGGGAGAGCACCUGCCUUGCACGCAGGGGGUCGACGGU
X54300.1/105-177    GGGGGUAUAGCUUAGUUGGUAGAGCGCUGCUUUUGCAAGGCAGAUGUCAGCGGU
X60981.1/3446-3518  GGAGGAUUAGCUCAGCUGGGAGAGCACUUGCCUUACAAGCAAGGGGUCGGCGGU
#=GC SS_cons        <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.

AF105125.1/104-176  UCGAGUCCGCUAACCUCCA
J01395.1/3006-3078  UCGAAUCCGCUUAUCUCCA
X03715.1/481-553    UCGAUCCCGUUCGGGUCCA
X54300.1/105-177    UCGAAUCCGCUUACCUCCA
X60981.1/3446-3518  UCGAUCCCGUCAUCCUCCA
#=GC SS_cons        ......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln40.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln40.fa

M32222.1/3110-3183  GGGCCCAUAGCUCAGCCUGGGAGAGCGCCGCCCUUGCAAGGCGGAGGCCCCGGG
AF234285.1/261-333  GGGGCUAUAGCUCAGCU.GGGAGAGCGCCUGCUUUGCACGCAGGAGGUCUGCGG
X03715.1/481-553    GGGCCCGUAGCUCAGCU.GGGAGAGCACCUGCCUUGCACGCAGGGGGUCGACGG
X51423.1/1802-1874  GGGCUUGUAGCUCAGCU.GGUAGAGCGCCGCCUUUGCAAGGCGGAGGCCCUGGG
L00194.1/685-756    GGGGCCAUAGCUCAGUU.GGUAGAGCGCCUGCUUUGCAAGCAGGUGU.CGUCGG
#=GC SS_cons        <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<

M32222.1/3110-3183  UUCAAAUCCCGGUGGGUCCA
AF234285.1/261-333  UUCGAUCCCGCAUAGCUCCA
X03715.1/481-553    UUCGAUCCCGUUCGGGUCCA
X51423.1/1802-1874  UCCGAAUCCCAGCAAGUCCA
L00194.1/685-756    UUCGAAUCCGUCUGGCUCCA
#=GC SS_cons        .......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln41.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln41.fa

AF070678.1/91-163   GGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAGGUCAGCGGU
M21373.1/208-280    GGGGGUAUAGCUCAGUUGGUAGAGCGUUGCUUUUGCAUAGCAGACGUCAGCAGU
X03715.1/481-553    GGGCCCGUAGCUCAGCUGGGAGAGCACCUGCCUUGCACGCAGGGGGUCGACGGU
X51423.1/1802-1874  GGGCUUGUAGCUCAGCUGGUAGAGCGCCGCCUUUGCAAGGCGGAGGCCCUGGGU
L00194.1/685-756    GGGGCCAUAGCUCAGUUGGUAGAGCGCCUGCUUUGCAAGCAGGUGU.CGUCGGU
#=GC SS_cons        <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.

AF070678.1/91-163   UCGAUCCCGCUAGGCUCCA
M21373.1/208-280    UCGAGUCUGCUUAUCUCCA
X03715.1/481-553    UCGAUCCCGUUCGGGUCCA
X51423.1/1802-1874  CCGAAUCCCAGCAAGUCCA
L00194.1/685-756    UCGAAUCCGUCUGGCUCCA
#=GC SS_cons        ......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln42.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln42.fa

M32222.1/3110-3183  GGGCCCAUAGCUCAGCCUGGGAGAGCGCCGCCCUUGCAAGGCGGAGGCCCCGGG
AF105125.1/104-176  GGGGGUUUAGCUCAGUU.GGUAGAGCGCCUGCUUUGCAAGCAGGAUGUCAGCGG
X54300.1/105-177    GGGGGUAUAGCUUAGUU.GGUAGAGCGCUGCUUUUGCAAGGCAGAUGUCAGCGG
AE000965.1/156-85   GGGCUCGUAGCUCAGC..GGGAGAGCGCCGCCUUUGCGAGGCGGAGGCCGCGGG
L00194.1/685-756    GGGGCCAUAGCUCAGUU.GGUAGAGCGCCUGCUUUGCAAGCAGGUGU.CGUCGG
#=GC SS_cons        <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<

M32222.1/3110-3183  UUCAAAUCCCGGUGGGUCCA
AF105125.1/104-176  UUCGAGUCCGCUAACCUCCA
X54300.1/105-177    UUCGAAUCCGCUUACCUCCA
AE000965.1/156-85   UUCAAAUCCCGCCGAGUCCA
L00194.1/685-756    UUCGAAUCCGUCUGGCUCCA
#=GC SS_cons        .......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln43.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln43.fa

M32222.1/3110-3183  GGGCCCAUAGCUCAGCCUGGGAGAGCGCCGCCCUUGCAAGGCGGAGGCCCCGGG
J01395.1/3006-3078  GGGGAUAUAGCUCAGUU.GGUAGAGCGCUGCCUUUGCAAGGCAGAUGUCAGCGG
X15768.1/211-283    GGGGGUAUAGCUCAGUU.GGUAGAGCGCUGCCUUUGCAAGGCAGUGGUCAGCGG
AB003409.1/96-167   GGGCCCAUAGCUCAGU..GGUAGAGUGCCUCCUUUGCAAGGAGGAUGCCCUGGG
AE000965.1/156-85   GGGCUCGUAGCUCAGC..GGGAGAGCGCCGCCUUUGCGAGGCGGAGGCCGCGGG
#=GC SS_cons        <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<

M32222.1/3110-3183  UUCAAAUCCCGGUGGGUCCA
J01395.1/3006-3078  UUCGAAUCCGCUUAUCUCCA
X15768.1/211-283    UUCGAGUCCGCUUACCUCCA
AB003409.1/96-167   UUCGAAUCCCAGUGGGUCCA
AE000965.1/156-85   UUCAAAUCCCGCCGAGUCCA
#=GC SS_cons        .......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln44.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln44.fa

AF083212.1/212-284  GGGGCCAUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAGGUCAGGAGU
D00547.1/329-401    GGGCCCUUAGCUCAGCUGGGAGAGCACCUGCCUUGCACGCAGGGGGUCGACGGU
M19493.1/340-412    GGGGGUAUAGCUCAGUUGGUAGAGCGCUGCCUUUGCAAGGCAGAUGUCAGCGGU
X60981.1/3446-3518  GGAGGAUUAGCUCAGCUGGGAGAGCACUUGCCUUACAAGCAAGGGGUCGGCGGU
AB003409.1/96-167   GGGCCCAUAGCUCAGU.GGUAGAGUGCCUCCUUUGCAAGGAGGAUGCCCUGGGU
#=GC SS_cons        <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.

AF083212.1/212-284  UCGAUCCUCCUUGGCUCCA
D00547.1/329-401    UCGAUCCCGUUAGGGUCCA
M19493.1/340-412    UCGAGUCCGCUUACCUCCA
X60981.1/3446-3518  UCGAUCCCGUCAUCCUCCA
AB003409.1/96-167   UCGAAUCCCAGUGGGUCCA
#=GC SS_cons        ......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln45.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln45.fa

AF041468.1/40566-40494  GGGGGUAUAGCUCAGUUGGUAGAGCGCUGCCUUUGCACGGCAGAUGUCAG
AF234285.1/261-333      GGGGCUAUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAGGUCUG
X60981.1/3446-3518      GGAGGAUUAGCUCAGCUGGGAGAGCACUUGCCUUACAAGCAAGGGGUCGG
AB003409.1/96-167       GGGCCCAUAGCUCAGU.GGUAGAGUGCCUCCUUUGCAAGGAGGAUGCCCU
AE000965.1/156-85       GGGCUCGUAGCUCAGC.GGGAGAGCGCCGCCUUUGCGAGGCGGAGGCCGC
#=GC SS_cons            <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<

AF041468.1/40566-40494  GGGUUCGAGUCCCCUUACCUCCA
AF234285.1/261-333      CGGUUCGAUCCCGCAUAGCUCCA
X60981.1/3446-3518      CGGUUCGAUCCCGUCAUCCUCCA
AB003409.1/96-167       GGGUUCGAAUCCCAGUGGGUCCA
AE000965.1/156-85       GGGUUCAAAUCCCGCCGAGUCCA
#=GC SS_cons            <<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln46.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln46.fa

AY017179.1/1528-1601    GGGCCGGUAGCUCAGCCUGGGAGAGCGUCGGCUUUGCAAGCCGAAGGCCC
AF041468.1/40566-40494  GGGGGUAUAGCUCAGUU.GGUAGAGCGCUGCCUUUGCACGGCAGAUGUCA
X03715.1/481-553        GGGCCCGUAGCUCAGCU.GGGAGAGCACCUGCCUUGCACGCAGGGGGUCG
X51423.1/1802-1874      GGGCUUGUAGCUCAGCU.GGUAGAGCGCCGCCUUUGCAAGGCGGAGGCCC
L00194.1/685-756        GGGGCCAUAGCUCAGUU.GGUAGAGCGCCUGCUUUGCAAGCAGGUGU.CG
#=GC SS_cons            <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<

AY017179.1/1528-1601    CGGGUUCGAAUCCCGGCCGGUCCA
AF041468.1/40566-40494  GGGGUUCGAGUCCCCUUACCUCCA
X03715.1/481-553        ACGGUUCGAUCCCGUUCGGGUCCA
X51423.1/1802-1874      UGGGUCCGAAUCCCAGCAAGUCCA
L00194.1/685-756        UCGGUUCGAAUCCGUCUGGCUCCA
#=GC SS_cons            <<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln47.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln47.fa

M32222.1/3110-3183      GGGCCCAUAGCUCAGCCUGGGAGAGCGCCGCCCUUGCAAGGCGGAGGCCC
AF041468.1/40566-40494  GGGGGUAUAGCUCAGUU.GGUAGAGCGCUGCCUUUGCACGGCAGAUGUCA
AF083212.1/212-284      GGGGCCAUAGCUCAGCU.GGGAGAGCGCCUGCUUUGCACGCAGGAGGUCA
AF105125.1/104-176      GGGGGUUUAGCUCAGUU.GGUAGAGCGCCUGCUUUGCAAGCAGGAUGUCA
X60981.1/3446-3518      GGAGGAUUAGCUCAGCU.GGGAGAGCACUUGCCUUACAAGCAAGGGGUCG
#=GC SS_cons            <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<

M32222.1/3110-3183      CGGGUUCAAAUCCCGGUGGGUCCA
AF041468.1/40566-40494  GGGGUUCGAGUCCCCUUACCUCCA
AF083212.1/212-284      GGAGUUCGAUCCUCCUUGGCUCCA
AF105125.1/104-176      GCGGUUCGAGUCCGCUAACCUCCA
X60981.1/3446-3518      GCGGUUCGAUCCCGUCAUCCUCCA
#=GC SS_cons            <<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln48.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln48.fa

M32222.1/3110-3183  GGGCCCAUAGCUCAGCCUGGGAGAGCGCCGCCCUUGCAAGGCGGAGGCCCCGGG
AF105125.1/104-176  GGGGGUUUAGCUCAGUU.GGUAGAGCGCCUGCUUUGCAAGCAGGAUGUCAGCGG
X51423.1/1802-1874  GGGCUUGUAGCUCAGCU.GGUAGAGCGCCGCCUUUGCAAGGCGGAGGCCCUGGG
X54300.1/105-177    GGGGGUAUAGCUUAGUU.GGUAGAGCGCUGCUUUUGCAAGGCAGAUGUCAGCGG
AE000965.1/156-85   GGGCUCGUAGCUCAGC..GGGAGAGCGCCGCCUUUGCGAGGCGGAGGCCGCGGG
#=GC SS_cons        <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<

M32222.1/3110-3183  UUCAAAUCCCGGUGGGUCCA
AF105125.1/104-176  UUCGAGUCCGCUAACCUCCA
X51423.1/1802-1874  UCCGAAUCCCAGCAAGUCCA
X54300.1/105-177    UUCGAAUCCGCUUACCUCCA
AE000965.1/156-85   UUCAAAUCCCGCCGAGUCCA
#=GC SS_cons        .......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln49.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln49.fa

AF105125.1/104-176  GGGGGUUUAGCUCAGUUGGUAGAGCGCCUGCUUUGCAAGCAGGAUGUCAGCGGU
M19493.1/340-412    GGGGGUAUAGCUCAGUUGGUAGAGCGCUGCCUUUGCAAGGCAGAUGUCAGCGGU
X51423.1/1802-1874  GGGCUUGUAGCUCAGCUGGUAGAGCGCCGCCUUUGCAAGGCGGAGGCCCUGGGU
AB003409.1/96-167   GGGCCCAUAGCUCAGU.GGUAGAGUGCCUCCUUUGCAAGGAGGAUGCCCUGGGU
AE000965.1/156-85   GGGCUCGUAGCUCAGC.GGGAGAGCGCCGCCUUUGCGAGGCGGAGGCCGCGGGU
#=GC SS_cons        <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<<<.

AF105125.1/104-176  UCGAGUCCGCUAACCUCCA
M19493.1/340-412    UCGAGUCCGCUUACCUCCA
X51423.1/1802-1874  CCGAAUCCCAGCAAGUCCA
AB003409.1/96-167   UCGAAUCCCAGUGGGUCCA
AE000965.1/156-85   UCAAAUCCCGCCGAGUCCA
#=GC SS_cons        ......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln50.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln50.fa

AF041468.1/40566-40494  GGGGGUAUAGCUCAGUUGGUAGAGCGCUGCCUUUGCACGGCAGAUGUCAG
M19493.1/340-412        GGGGGUAUAGCUCAGUUGGUAGAGCGCUGCCUUUGCAAGGCAGAUGUCAG
X03715.1/481-553        GGGCCCGUAGCUCAGCUGGGAGAGCACCUGCCUUGCACGCAGGGGGUCGA
X54300.1/105-177        GGGGGUAUAGCUUAGUUGGUAGAGCGCUGCUUUUGCAAGGCAGAUGUCAG
AE000965.1/156-85       GGGCUCGUAGCUCAGC.GGGAGAGCGCCGCCUUUGCGAGGCGGAGGCCGC
#=GC SS_cons            <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<

AF041468.1/40566-40494  GGGUUCGAGUCCCCUUACCUCCA
M19493.1/340-412        CGGUUCGAGUCCGCUUACCUCCA
X03715.1/481-553        CGGUUCGAUCCCGUUCGGGUCCA
X54300.1/105-177        CGGUUCGAAUCCGCUUACCUCCA
AE000965.1/156-85       GGGUUCAAAUCCCGCCGAGUCCA
#=GC SS_cons            <<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln51.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln51.fa

AY017179.1/1528-1601  GGGCCGGUAGCUCAGCCUGGGAGAGCGUCGGCUUUGCAAGCCGAAGGCCCCG
M32222.1/3110-3183    GGGCCCAUAGCUCAGCCUGGGAGAGCGCCGCCCUUGCAAGGCGGAGGCCCCG
AF234285.1/261-333    GGGGCUAUAGCUCAGCU.GGGAGAGCGCCUGCUUUGCACGCAGGAGGUCUGC
M19493.1/340-412      GGGGGUAUAGCUCAGUU.GGUAGAGCGCUGCCUUUGCAAGGCAGAUGUCAGC
X03715.1/481-553      GGGCCCGUAGCUCAGCU.GGGAGAGCACCUGCCUUGCACGCAGGGGGUCGAC
#=GC SS_cons          <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<

AY017179.1/1528-1601  GGUUCGAAUCCCGGCCGGUCCA
M32222.1/3110-3183    GGUUCAAAUCCCGGUGGGUCCA
AF234285.1/261-333    GGUUCGAUCCCGCAUAGCUCCA
M19493.1/340-412      GGUUCGAGUCCGCUUACCUCCA
X03715.1/481-553      GGUUCGAUCCCGUUCGGGUCCA
#=GC SS_cons          <<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln52.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln52.fa

X03715.1/667-740    GGACCCUUAGCUCAGUUGGUUAGAGCAUCCGGCUCAUAACCGGAUGGUCACUGG
J00881.1/210-282    GCCCGGCUAGCUCAGUUGGU.AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGG
M24578.1/1373-1445  GCCCGGCUAGCUCAGUCGGU.AGAGCGCCAGACUCUUAAUCUGGUGGUCGGGGG
X16590.1/277-349    GCCCUUCUAGCUCAGUCGGU.AGGGCGCACGGCUCUUAACCGUGUGGUCGUGGG
Z11880.1/124-195    GCCUUCCUAGCUCAGU.GGU.AGAGCGCACGGCUUUUAACCGUGUGGUCGUGGG
#=GC SS_cons        <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<

X03715.1/667-740    UUCAAGUCCAGUAGGGUCCA
J00881.1/210-282    UUCGAGCCCCACGUUGGGCG
M24578.1/1373-1445  UUCGAGCCCCCCGUUGGGCG
X16590.1/277-349    UUCGAGCCCCACGGGGGGUG
Z11880.1/124-195    UUCGAUCCCCACGGAAGGCG
#=GC SS_cons        .......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln53.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln53.fa

AE006699.1/3409-3482  GGGCCCGUAGCUUAGCUCGGU.AGAGCGCUCGGCUCAUAACCGAGUGGUCAG
X03715.1/667-740      GGACCCUUAGCUCAGUU.GGUUAGAGCAUCCGGCUCAUAACCGGAUGGUCAC
J00881.1/210-282      GCCCGGCUAGCUCAGUU.GGU.AGAGCAUGAGACUCUUAAUCUCAGGGUCGU
M24578.1/1373-1445    GCCCGGCUAGCUCAGUC.GGU.AGAGCGCCAGACUCUUAAUCUGGUGGUCGG
X16590.1/277-349      GCCCUUCUAGCUCAGUC.GGU.AGGGCGCACGGCUCUUAACCGUGUGGUCGU
#=GC SS_cons          <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.....<<

AE006699.1/3409-3482  GGGUUCAAAUCCCCUCGGGCCCA
X03715.1/667-740      UGGUUCAAGUCCAGUAGGGUCCA
J00881.1/210-282      GGGUUCGAGCCCCACGUUGGGCG
M24578.1/1373-1445    GGGUUCGAGCCCCCCGUUGGGCG
X16590.1/277-349      GGGUUCGAGCCCCACGGGGGGUG
#=GC SS_cons          <<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln54.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln54.fa

X03715.1/667-740    GGACCCUUAGCUCAGUUGGUUAGAGCAUCCGGCUCAUAACCGGAUGGUCACUGG
AE008848.1/725-797  GGCCCCUUAGCUCAGU.GGUUAGAGCAGGCGACUCAUAAUCGCUUGGUCGCUGG
AF047724.1/439-367  GCCCUUCUAGCUCAGUCGGU.AGAGCGCACGGCUCUUAACCGUGUGGUCGUGGG
J00881.1/210-282    GCCCGGCUAGCUCAGUUGGU.AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGG
X16590.1/277-349    GCCCUUCUAGCUCAGUCGGU.AGGGCGCACGGCUCUUAACCGUGUGGUCGUGGG
#=GC SS_cons        <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<<<

X03715.1/667-740    UUCAAGUCCAGUAGGGUCCA
AE008848.1/725-797  UUCAAGUCCAGCAGGGGCCA
AF047724.1/439-367  UUCGAGCCCCACGGGGGGUG
J00881.1/210-282    UUCGAGCCCCACGUUGGGCG
X16590.1/277-349    UUCGAGCCCCACGGGGGGUG
#=GC SS_cons        .......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln55.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln55.fa

U67517.1/7202-7276    GGGCCCGUAGCUCAGCCUGGUCAGAGCGCUCGGCUCAUAACCGAGUGGUCAA
AF008220.1/6251-6324  GGACCUUUAGCUCAGUU.GGUUAGAGCAGACGGCUCAUAACCGUCCGGUCGU
X03715.1/667-740      GGACCCUUAGCUCAGUU.GGUUAGAGCAUCCGGCUCAUAACCGGAUGGUCAC
X16590.1/277-349      GCCCUUCUAGCUCAGUC.GGU.AGGGCGCACGGCUCUUAACCGUGUGGUCGU
X69660.1/114-186      GCCCAGAUAGCUCAGUC.GGU.AGAGCGCAAGGCUUUUAACCUUGUGGUCGG
#=GC SS_cons          <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.....<<

U67517.1/7202-7276    GGGUUCAAAUCCCUUCGGGCCCA
AF008220.1/6251-6324  AGGUUCGAGUCCUACAAGGUCCA
X03715.1/667-740      UGGUUCAAGUCCAGUAGGGUCCA
X16590.1/277-349      GGGUUCGAGCCCCACGGGGGGUG
X69660.1/114-186      GGGUUCGAGCCCCCCUUUGGGCG
#=GC SS_cons          <<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln56.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln56.fa

U67517.1/7202-7276    GGGCCCGUAGCUCAGCCUGGUCAGAGCGCUCGGCUCAUAACCGAGUGGUCAA
AF008220.1/6251-6324  GGACCUUUAGCUCAGUU.GGUUAGAGCAGACGGCUCAUAACCGUCCGGUCGU
X03715.1/667-740      GGACCCUUAGCUCAGUU.GGUUAGAGCAUCCGGCUCAUAACCGGAUGGUCAC
AE008848.1/725-797    GGCCCCUUAGCUCAGU..GGUUAGAGCAGGCGACUCAUAAUCGCUUGGUCGC
X69660.1/114-186      GCCCAGAUAGCUCAGUC.GGU.AGAGCGCAAGGCUUUUAACCUUGUGGUCGG
#=GC SS_cons          <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.....<<

U67517.1/7202-7276    GGGUUCAAAUCCCUUCGGGCCCA
AF008220.1/6251-6324  AGGUUCGAGUCCUACAAGGUCCA
X03715.1/667-740      UGGUUCAAGUCCAGUAGGGUCCA
AE008848.1/725-797    UGGUUCAAGUCCAGCAGGGGCCA
X69660.1/114-186      GGGUUCGAGCCCCCCUUUGGGCG
#=GC SS_cons          <<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln57.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln57.fa

U67517.1/7202-7276    GGGCCCGUAGCUCAGCCUGGUCAGAGCGCUCGGCUCAUAACCGAGUGGUCAA
AE006699.1/3409-3482  GGGCCCGUAGCUUAGCUCGGU.AGAGCGCUCGGCUCAUAACCGAGUGGUCAG
AF008220.1/6251-6324  GGACCUUUAGCUCAGUU.GGUUAGAGCAGACGGCUCAUAACCGUCCGGUCGU
J00881.1/210-282      GCCCGGCUAGCUCAGUU.GGU.AGAGCAUGAGACUCUUAAUCUCAGGGUCGU
X16590.1/277-349      GCCCUUCUAGCUCAGUC.GGU.AGGGCGCACGGCUCUUAACCGUGUGGUCGU
#=GC SS_cons          <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.....<<

U67517.1/7202-7276    GGGUUCAAAUCCCUUCGGGCCCA
AE006699.1/3409-3482  GGGUUCAAAUCCCCUCGGGCCCA
AF008220.1/6251-6324  AGGUUCGAGUCCUACAAGGUCCA
J00881.1/210-282      GGGUUCGAGCCCCACGUUGGGCG
X16590.1/277-349      GGGUUCGAGCCCCACGGGGGGUG
#=GC SS_cons          <<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln58.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln58.fa

U67517.1/7202-7276    GGGCCCGUAGCUCAGCCUGGUCAGAGCGCUCGGCUCAUAACCGAGUGGUCAA
AE006699.1/3409-3482  GGGCCCGUAGCUUAGCUCGGU.AGAGCGCUCGGCUCAUAACCGAGUGGUCAG
J00881.1/210-282      GCCCGGCUAGCUCAGUU.GGU.AGAGCAUGAGACUCUUAAUCUCAGGGUCGU
M24578.1/1373-1445    GCCCGGCUAGCUCAGUC.GGU.AGAGCGCCAGACUCUUAAUCUGGUGGUCGG
Z11880.1/124-195      GCCUUCCUAGCUCAGU..GGU.AGAGCGCACGGCUUUUAACCGUGUGGUCGU
#=GC SS_cons          <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.....<<

U67517.1/7202-7276    GGGUUCAAAUCCCUUCGGGCCCA
AE006699.1/3409-3482  GGGUUCAAAUCCCCUCGGGCCCA
J00881.1/210-282      GGGUUCGAGCCCCACGUUGGGCG
M24578.1/1373-1445    GGGUUCGAGCCCCCCGUUGGGCG
Z11880.1/124-195      GGGUUCGAUCCCCACGGAAGGCG
#=GC SS_cons          <<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln59.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln59.fa

U67517.1/7202-7276    GGGCCCGUAGCUCAGCCUGGUCAGAGCGCUCGGCUCAUAACCGAGUGGUCAA
AF008220.1/6251-6324  GGACCUUUAGCUCAGUU.GGUUAGAGCAGACGGCUCAUAACCGUCCGGUCGU
X03715.1/667-740      GGACCCUUAGCUCAGUU.GGUUAGAGCAUCCGGCUCAUAACCGGAUGGUCAC
M24578.1/1373-1445    GCCCGGCUAGCUCAGUC.GGU.AGAGCGCCAGACUCUUAAUCUGGUGGUCGG
Z11880.1/124-195      GCCUUCCUAGCUCAGU..GGU.AGAGCGCACGGCUUUUAACCGUGUGGUCGU
#=GC SS_cons          <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.....<<

U67517.1/7202-7276    GGGUUCAAAUCCCUUCGGGCCCA
AF008220.1/6251-6324  AGGUUCGAGUCCUACAAGGUCCA
X03715.1/667-740      UGGUUCAAGUCCAGUAGGGUCCA
M24578.1/1373-1445    GGGUUCGAGCCCCCCGUUGGGCG
Z11880.1/124-195      GGGUUCGAUCCCCACGGAAGGCG
#=GC SS_cons          <<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln60.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln60.fa

U67517.1/7202-7276  GGGCCCGUAGCUCAGCCUGGUCAGAGCGCUCGGCUCAUAACCGAGUGGUCAAGG
X03715.1/667-740    GGACCCUUAGCUCAGUU.GGUUAGAGCAUCCGGCUCAUAACCGGAUGGUCACUG
AE008848.1/725-797  GGCCCCUUAGCUCAGU..GGUUAGAGCAGGCGACUCAUAAUCGCUUGGUCGCUG
AF047724.1/439-367  GCCCUUCUAGCUCAGUC.GGU.AGAGCGCACGGCUCUUAACCGUGUGGUCGUGG
X69660.1/114-186    GCCCAGAUAGCUCAGUC.GGU.AGAGCGCAAGGCUUUUAACCUUGUGGUCGGGG
#=GC SS_cons        <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.....<<<<

U67517.1/7202-7276  GUUCAAAUCCCUUCGGGCCCA
X03715.1/667-740    GUUCAAGUCCAGUAGGGUCCA
AE008848.1/725-797  GUUCAAGUCCAGCAGGGGCCA
AF047724.1/439-367  GUUCGAGCCCCACGGGGGGUG
X69660.1/114-186    GUUCGAGCCCCCCUUUGGGCG
#=GC SS_cons        <.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln61.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln61.fa

U67517.1/7202-7276    GGGCCCGUAGCUCAGCCUGGUCAGAGCGCUCGGCUCAUAACCGAGUGGUCAA
AE006699.1/3409-3482  GGGCCCGUAGCUUAGCUCGGU.AGAGCGCUCGGCUCAUAACCGAGUGGUCAG
X03715.1/667-740      GGACCCUUAGCUCAGUU.GGUUAGAGCAUCCGGCUCAUAACCGGAUGGUCAC
AF047724.1/439-367    GCCCUUCUAGCUCAGUC.GGU.AGAGCGCACGGCUCUUAACCGUGUGGUCGU
X69660.1/114-186      GCCCAGAUAGCUCAGUC.GGU.AGAGCGCAAGGCUUUUAACCUUGUGGUCGG
#=GC SS_cons          <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.....<<

U67517.1/7202-7276    GGGUUCAAAUCCCUUCGGGCCCA
AE006699.1/3409-3482  GGGUUCAAAUCCCCUCGGGCCCA
X03715.1/667-740      UGGUUCAAGUCCAGUAGGGUCCA
AF047724.1/439-367    GGGUUCGAGCCCCACGGGGGGUG
X69660.1/114-186      GGGUUCGAGCCCCCCUUUGGGCG
#=GC SS_cons          <<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln62.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln62.fa

AB031214.1/4204-4277  GGGCCUGUAGCUCAGCUGGUUAGAGCGCACGCCUGAUAAGCGUGAGGUCGGU
AB066098.1/1687-1760  GGGCCUAUAGCUCAGCUGGUUAGAGUGCACCCCUGAUAAGGGUGAGGUCACA
X54300.1/29-102       GGGUUAUUAGCUCAGUUGGUUAGAGCACACCCCUGAUAAGGGUGAGGUCCCU
AE004843.1/4972-4900  GCUCAUGUAGCUCAGUUGGU.AGAGCACACCCUUGGUAAGGGUGAGGUCAGC
AE005629.1/7274-7346  GCUGAUAUAGCUCAGUUGGU.AGAGCGCACCCUUGGUAAGGGUGAGGUCGGC
#=GC SS_cons          <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<

AB031214.1/4204-4277  GGUUCGAGUCCACUCAGGCCCA
AB066098.1/1687-1760  AGUUCAAGUCUUGUUAGGCCCA
X54300.1/29-102       GGUUCAAAUCCAGGAUAACCCA
AE004843.1/4972-4900  GGUUCAAAUCCGCUCAUGAGCU
AE005629.1/7274-7346  AGUUCGAAUCUGCCUAUCAGCA
#=GC SS_cons          <<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln63.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln63.fa

AE008886.1/9662-9735  AGGCUUGUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCGGU
X07395.1/103-176      GGGCCUAUAGCUCAGCUGGCUAGAGCACACGCCUGAUAAGCGUGAGGUCAGU
X12890.1/1972-2045    GGGCUAUUAGCUCAGUUGGUUAGAGCAUACCCUUGAUAAGGGUAAGGUCGCU
X54300.1/29-102       GGGUUAUUAGCUCAGUUGGUUAGAGCACACCCCUGAUAAGGGUGAGGUCCCU
M58306.1/1-72         GGGCUAUUAGCUCAGU.GGU.AGAGCGCGCCCCUGAUAAGGGCGAGGUCUCU
#=GC SS_cons          <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<

AE008886.1/9662-9735  GGUUCAAGUCCACUCAGGCCUA
X07395.1/103-176      GGUUCGAGUCCACUUGGGCCCA
X12890.1/1972-2045    AGUUCAAGUCUAGCAUGGCCCU
X54300.1/29-102       GGUUCAAAUCCAGGAUAACCCA
M58306.1/1-72         GGUUCAAGUCCAGGAUGGCCCA
#=GC SS_cons          <<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln64.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln64.fa

AB031214.1/4204-4277  GGGCCUGUAGCUCAGCUGGUUAGAGCGCACGCCUGAUAAGCGUGAGGUCGGU
X12890.1/1972-2045    GGGCUAUUAGCUCAGUUGGUUAGAGCAUACCCUUGAUAAGGGUAAGGUCGCU
AE004843.1/4972-4900  GCUCAUGUAGCUCAGUUGGU.AGAGCACACCCUUGGUAAGGGUGAGGUCAGC
AE005629.1/7274-7346  GCUGAUAUAGCUCAGUUGGU.AGAGCGCACCCUUGGUAAGGGUGAGGUCGGC
M58306.1/1-72         GGGCUAUUAGCUCAGU.GGU.AGAGCGCGCCCCUGAUAAGGGCGAGGUCUCU
#=GC SS_cons          <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<

AB031214.1/4204-4277  GGUUCGAGUCCACUCAGGCCCA
X12890.1/1972-2045    AGUUCAAGUCUAGCAUGGCCCU
AE004843.1/4972-4900  GGUUCAAAUCCGCUCAUGAGCU
AE005629.1/7274-7346  AGUUCGAAUCUGCCUAUCAGCA
M58306.1/1-72         GGUUCAAGUCCAGGAUGGCCCA
#=GC SS_cons          <<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln65.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln65.fa

AB066098.1/1687-1760  GGGCCUAUAGCUCAGCUGGUUAGAGUGCACCCCUGAUAAGGGUGAGGUCACA
X07395.1/103-176      GGGCCUAUAGCUCAGCUGGCUAGAGCACACGCCUGAUAAGCGUGAGGUCAGU
AE004843.1/4972-4900  GCUCAUGUAGCUCAGUUGGU.AGAGCACACCCUUGGUAAGGGUGAGGUCAGC
AE005629.1/7274-7346  GCUGAUAUAGCUCAGUUGGU.AGAGCGCACCCUUGGUAAGGGUGAGGUCGGC
M58306.1/1-72         GGGCUAUUAGCUCAGU.GGU.AGAGCGCGCCCCUGAUAAGGGCGAGGUCUCU
#=GC SS_cons          <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<

AB066098.1/1687-1760  AGUUCAAGUCUUGUUAGGCCCA
X07395.1/103-176      GGUUCGAGUCCACUUGGGCCCA
AE004843.1/4972-4900  GGUUCAAAUCCGCUCAUGAGCU
AE005629.1/7274-7346  AGUUCGAAUCUGCCUAUCAGCA
M58306.1/1-72         GGUUCAAGUCCAGGAUGGCCCA
#=GC SS_cons          <<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln66.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln66.fa

AB066098.1/1687-1760  GGGCCUAUAGCUCAGCUGGUUAGAGUGCACCCCUGAUAAGGGUGAGGUCACA
AE008886.1/9662-9735  AGGCUUGUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCGGU
X54300.1/29-102       GGGUUAUUAGCUCAGUUGGUUAGAGCACACCCCUGAUAAGGGUGAGGUCCCU
AE004843.1/4972-4900  GCUCAUGUAGCUCAGUUGGU.AGAGCACACCCUUGGUAAGGGUGAGGUCAGC
AE005629.1/7274-7346  GCUGAUAUAGCUCAGUUGGU.AGAGCGCACCCUUGGUAAGGGUGAGGUCGGC
#=GC SS_cons          <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<

AB066098.1/1687-1760  AGUUCAAGUCUUGUUAGGCCCA
AE008886.1/9662-9735  GGUUCAAGUCCACUCAGGCCUA
X54300.1/29-102       GGUUCAAAUCCAGGAUAACCCA
AE004843.1/4972-4900  GGUUCAAAUCCGCUCAUGAGCU
AE005629.1/7274-7346  AGUUCGAAUCUGCCUAUCAGCA
#=GC SS_cons          <<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln67.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln67.fa

AB066098.1/1687-1760  GGGCCUAUAGCUCAGCUGGUUAGAGUGCACCCCUGAUAAGGGUGAGGUCACA
AE008886.1/9662-9735  AGGCUUGUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCGGU
X12890.1/1972-2045    GGGCUAUUAGCUCAGUUGGUUAGAGCAUACCCUUGAUAAGGGUAAGGUCGCU
X54300.1/29-102       GGGUUAUUAGCUCAGUUGGUUAGAGCACACCCCUGAUAAGGGUGAGGUCCCU
AE005629.1/7274-7346  GCUGAUAUAGCUCAGUUGGU.AGAGCGCACCCUUGGUAAGGGUGAGGUCGGC
#=GC SS_cons          <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<

AB066098.1/1687-1760  AGUUCAAGUCUUGUUAGGCCCA
AE008886.1/9662-9735  GGUUCAAGUCCACUCAGGCCUA
X12890.1/1972-2045    AGUUCAAGUCUAGCAUGGCCCU
X54300.1/29-102       GGUUCAAAUCCAGGAUAACCCA
AE005629.1/7274-7346  AGUUCGAAUCUGCCUAUCAGCA
#=GC SS_cons          <<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln68.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln68.fa

AB066098.1/1687-1760  GGGCCUAUAGCUCAGCUGGUUAGAGUGCACCCCUGAUAAGGGUGAGGUCACA
X07395.1/103-176      GGGCCUAUAGCUCAGCUGGCUAGAGCACACGCCUGAUAAGCGUGAGGUCAGU
X12890.1/1972-2045    GGGCUAUUAGCUCAGUUGGUUAGAGCAUACCCUUGAUAAGGGUAAGGUCGCU
AE004843.1/4972-4900  GCUCAUGUAGCUCAGUUGGU.AGAGCACACCCUUGGUAAGGGUGAGGUCAGC
AE005629.1/7274-7346  GCUGAUAUAGCUCAGUUGGU.AGAGCGCACCCUUGGUAAGGGUGAGGUCGGC
#=GC SS_cons          <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<

AB066098.1/1687-1760  AGUUCAAGUCUUGUUAGGCCCA
X07395.1/103-176      GGUUCGAGUCCACUUGGGCCCA
X12890.1/1972-2045    AGUUCAAGUCUAGCAUGGCCCU
AE004843.1/4972-4900  GGUUCAAAUCCGCUCAUGAGCU
AE005629.1/7274-7346  AGUUCGAAUCUGCCUAUCAGCA
#=GC SS_cons          <<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln69.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln69.fa

AB031214.1/4204-4277  GGGCCUGUAGCUCAGCUGGUUAGAGCGCACGCCUGAUAAGCGUGAGGUCGGU
AE008886.1/9662-9735  AGGCUUGUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCGGU
X07395.1/103-176      GGGCCUAUAGCUCAGCUGGCUAGAGCACACGCCUGAUAAGCGUGAGGUCAGU
X54300.1/29-102       GGGUUAUUAGCUCAGUUGGUUAGAGCACACCCCUGAUAAGGGUGAGGUCCCU
M58306.1/1-72         GGGCUAUUAGCUCAGU.GGU.AGAGCGCGCCCCUGAUAAGGGCGAGGUCUCU
#=GC SS_cons          <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<

AB031214.1/4204-4277  GGUUCGAGUCCACUCAGGCCCA
AE008886.1/9662-9735  GGUUCAAGUCCACUCAGGCCUA
X07395.1/103-176      GGUUCGAGUCCACUUGGGCCCA
X54300.1/29-102       GGUUCAAAUCCAGGAUAACCCA
M58306.1/1-72         GGUUCAAGUCCAGGAUGGCCCA
#=GC SS_cons          <<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln70.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln70.fa

AB066098.1/1687-1760  GGGCCUAUAGCUCAGCUGGUUAGAGUGCACCCCUGAUAAGGGUGAGGUCACA
AE008886.1/9662-9735  AGGCUUGUAGCUCAGGUGGUUAGAGCGCACCCCUGAUAAGGGUGAGGUCGGU
X07395.1/103-176      GGGCCUAUAGCUCAGCUGGCUAGAGCACACGCCUGAUAAGCGUGAGGUCAGU
AE004843.1/4972-4900  GCUCAUGUAGCUCAGUUGGU.AGAGCACACCCUUGGUAAGGGUGAGGUCAGC
AE005629.1/7274-7346  GCUGAUAUAGCUCAGUUGGU.AGAGCGCACCCUUGGUAAGGGUGAGGUCGGC
#=GC SS_cons          <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<

AB066098.1/1687-1760  AGUUCAAGUCUUGUUAGGCCCA
AE008886.1/9662-9735  GGUUCAAGUCCACUCAGGCCUA
X07395.1/103-176      GGUUCGAGUCCACUUGGGCCCA
AE004843.1/4972-4900  GGUUCAAAUCCGCUCAUGAGCU
AE005629.1/7274-7346  AGUUCGAAUCUGCCUAUCAGCA
#=GC SS_cons          <<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln71.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln71.fa

AB066098.1/1687-1760  GGGCCUAUAGCUCAGCUGGUUAGAGUGCACCCCUGAUAAGGGUGAGGUCACA
X07395.1/103-176      GGGCCUAUAGCUCAGCUGGCUAGAGCACACGCCUGAUAAGCGUGAGGUCAGU
X12890.1/1972-2045    GGGCUAUUAGCUCAGUUGGUUAGAGCAUACCCUUGAUAAGGGUAAGGUCGCU
X54300.1/29-102       GGGUUAUUAGCUCAGUUGGUUAGAGCACACCCCUGAUAAGGGUGAGGUCCCU
M58306.1/1-72         GGGCUAUUAGCUCAGU.GGU.AGAGCGCGCCCCUGAUAAGGGCGAGGUCUCU
#=GC SS_cons          <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<

AB066098.1/1687-1760  AGUUCAAGUCUUGUUAGGCCCA
X07395.1/103-176      GGUUCGAGUCCACUUGGGCCCA
X12890.1/1972-2045    AGUUCAAGUCUAGCAUGGCCCU
X54300.1/29-102       GGUUCAAAUCCAGGAUAACCCA
M58306.1/1-72         GGUUCAAGUCCAGGAUGGCCCA
#=GC SS_cons          <<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln72.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln72.fa

AJ400848.1/45575-45503  GCCCGCUUAGCUCAGAGGUUAGAGCAUCGCAUUUGUAAUGCGAUGGUCAU
M20968.1/1-73           GCCUGUUUAGCUCAGAGGUCAGAGCGUCGCACUUGUAAUGCGAUGGUCAU
X12889.1/644-572        ACCUACUUAACUCAGUGGUUAGAGUAUUGCUUUCAUACGGCAGGAGUCAU
X61698.1/1470-1542      ACCUACUUAACUCAGUGGUUAGAGUACUGCUUUCAUACGGCGGGAGGCAU
Y08502.1/137669-137741  ACCUACUUGACUCAGCGGUUAGAGUAUCGCUUUCAUACGGCGAGAGUCAU
#=GC SS_cons            <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<

AJ400848.1/45575-45503  CGGUUCGAGUCCGAUAGCCGGCU
M20968.1/1-73           CGGUUCGACUCCGAUAGCGGGCU
X12889.1/644-572        UGGUUCAAAUCCAAUAGUAGGUA
X61698.1/1470-1542      UGGUUCAAAUCCAAUAGUAGGUA
Y08502.1/137669-137741  UGGUUCAAAUCCAAUAGUAGGUA
#=GC SS_cons            <<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln73.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln73.fa

M20960.1/1-74           ACCUACUUAACUCAGUGGUUUAGAGUAUCGCUUUCAUACGGCGAGAGUCA
M16843.1/2824-2752      GCCUACUUAACUCAGUGGUU.AGAGUAUUGCUUUCAUACGGCGGGAGUCA
M20968.1/1-73           GCCUGUUUAGCUCAGAGGUC.AGAGCGUCGCACUUGUAAUGCGAUGGUCA
X86563.2/48153-48081    GCCCACUUAGCUCAGAGGUU.AGAGCAUCGCAUUUGUAAUGCGAGGGUCA
Y08502.1/137669-137741  ACCUACUUGACUCAGCGGUU.AGAGUAUCGCUUUCAUACGGCGAGAGUCA
#=GC SS_cons            <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<

M20960.1/1-74           UUGGUUCAAAUCCAAUAGUAGGUA
M16843.1/2824-2752      UUGGUUCAAAUCCAAUAGUAGGUA
M20968.1/1-73           UCGGUUCGACUCCGAUAGCGGGCU
X86563.2/48153-48081    UCGGUUCAAAUCCGAUAGUCGGCU
Y08502.1/137669-137741  UUGGUUCAAAUCCAAUAGUAGGUA
#=GC SS_cons            <<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln74.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln74.fa

AJ400848.1/45575-45503  GCCCGCUUAGCUCAGAGGUUAGAGCAUCGCAUUUGUAAUGCGAUGGUCAU
M20968.1/1-73           GCCUGUUUAGCUCAGAGGUCAGAGCGUCGCACUUGUAAUGCGAUGGUCAU
X12889.1/644-572        ACCUACUUAACUCAGUGGUUAGAGUAUUGCUUUCAUACGGCAGGAGUCAU
X86563.2/48153-48081    GCCCACUUAGCUCAGAGGUUAGAGCAUCGCAUUUGUAAUGCGAGGGUCAU
Y08502.1/137669-137741  ACCUACUUGACUCAGCGGUUAGAGUAUCGCUUUCAUACGGCGAGAGUCAU
#=GC SS_cons            <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<

AJ400848.1/45575-45503  CGGUUCGAGUCCGAUAGCCGGCU
M20968.1/1-73           CGGUUCGACUCCGAUAGCGGGCU
X12889.1/644-572        UGGUUCAAAUCCAAUAGUAGGUA
X86563.2/48153-48081    CGGUUCAAAUCCGAUAGUCGGCU
Y08502.1/137669-137741  UGGUUCAAAUCCAAUAGUAGGUA
#=GC SS_cons            <<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln75.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln75.fa

M20960.1/1-74           ACCUACUUAACUCAGUGGUUUAGAGUAUCGCUUUCAUACGGCGAGAGUCA
M20968.1/1-73           GCCUGUUUAGCUCAGAGGUC.AGAGCGUCGCACUUGUAAUGCGAUGGUCA
X12889.1/644-572        ACCUACUUAACUCAGUGGUU.AGAGUAUUGCUUUCAUACGGCAGGAGUCA
X61698.1/1470-1542      ACCUACUUAACUCAGUGGUU.AGAGUACUGCUUUCAUACGGCGGGAGGCA
Y08502.1/137669-137741  ACCUACUUGACUCAGCGGUU.AGAGUAUCGCUUUCAUACGGCGAGAGUCA
#=GC SS_cons            <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<

M20960.1/1-74           UUGGUUCAAAUCCAAUAGUAGGUA
M20968.1/1-73           UCGGUUCGACUCCGAUAGCGGGCU
X12889.1/644-572        UUGGUUCAAAUCCAAUAGUAGGUA
X61698.1/1470-1542      UUGGUUCAAAUCCAAUAGUAGGUA
Y08502.1/137669-137741  UUGGUUCAAAUCCAAUAGUAGGUA
#=GC SS_cons            <<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln76.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln76.fa

AJ400848.1/45575-45503  GCCCGCUUAGCUCAGAGGUUAGAGCAUCGCAUUUGUAAUGCGAUGGUCAU
M16843.1/2824-2752      GCCUACUUAACUCAGUGGUUAGAGUAUUGCUUUCAUACGGCGGGAGUCAU
M20968.1/1-73           GCCUGUUUAGCUCAGAGGUCAGAGCGUCGCACUUGUAAUGCGAUGGUCAU
X12889.1/644-572        ACCUACUUAACUCAGUGGUUAGAGUAUUGCUUUCAUACGGCAGGAGUCAU
Y08502.1/137669-137741  ACCUACUUGACUCAGCGGUUAGAGUAUCGCUUUCAUACGGCGAGAGUCAU
#=GC SS_cons            <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<

AJ400848.1/45575-45503  CGGUUCGAGUCCGAUAGCCGGCU
M16843.1/2824-2752      UGGUUCAAAUCCAAUAGUAGGUA
M20968.1/1-73           CGGUUCGACUCCGAUAGCGGGCU
X12889.1/644-572        UGGUUCAAAUCCAAUAGUAGGUA
Y08502.1/137669-137741  UGGUUCAAAUCCAAUAGUAGGUA
#=GC SS_cons            <<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln77.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln77.fa

AJ235316.1/1023-1090  GUUAAUGUAGCUUAAAGUCCAAAGCAAGGCACUGAAAAUGCCUAGAUGAGU.
M86493.1/1-68         GUUGAUGUAGCUUAAAACC.AAAGCAAGGCGCUGAAAAUGCCUAGAUGAGU.
M86499.1/1-68         GUUAAUGUAGCUUAAACUA.AAGGCAAGGCACUGAAAAUGCCAAGAUGAGUG
X14848.1/1-67         GUUAAUGUAGCUUAUAAU..AAAGCAAAGCACUGAAAAUGCUUAGAUGGAU.
M86497.1/1-66         GUUAAUGUAGCUUAAACU..AAAGCAAGGCACUGAAAAUGCCUAGAUGGGU.
#=GC SS_cons          <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<

AJ235316.1/1023-1090  ACACCA.ACUCCAUAAAC.
M86493.1/1-68         AUAUGA.ACUCCAUAAACA
M86499.1/1-68         .UACG.CACUCCAUGAACA
X14848.1/1-67         UCAAAA.AUCCCAUAAACA
M86497.1/1-66         AUUUA..ACUCCAUAAACA
#=GC SS_cons          ......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln78.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln78.fa

AJ235316.1/1023-1090  GUUAAUGUAGCUUAAAGUCCAAAGCAAGGCACUGAAAAUGCCUAGAUGAGU.
M86496.1/1-68         GUUAAUGUAGCUUAAAAUU.AAAGCAAGGCACUGAAAAUGCCUAGAUGAGU.
M86499.1/1-68         GUUAAUGUAGCUUAAACUA.AAGGCAAGGCACUGAAAAUGCCAAGAUGAGUG
M86501.1/1-68         GUUAAUGUAGCUUAA.AUCCAAAGCAAGGUACUGAAAAUGCCUAGAUGAGU.
X14848.1/1-67         GUUAAUGUAGCUUAUAAU..AAAGCAAAGCACUGAAAAUGCUUAGAUGGAU.
#=GC SS_cons          <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<

AJ235316.1/1023-1090  ACACCA..ACUCCAUAAAC.
M86496.1/1-68         AUAUUA..ACUCCAUAAACA
M86499.1/1-68         .UACG..CACUCCAUGAACA
M86501.1/1-68         .GUAUUA.ACUCCAUAAACA
X14848.1/1-67         UCAAAA..AUCCCAUAAACA
#=GC SS_cons          .......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln79.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln79.fa

M86493.1/1-68  GUUGAUGUAGCUUAAAACC.AAAGCAAGGCGCUGAAAAUGCCUAGAUGAGUAUAUGA.A
M86495.1/1-68  GUUAAUGUAGCUUAAAUCU.AAAGCAAGGCACUGAAAAUGCCUAGAUGAGUGCACUA.A
M86501.1/1-68  GUUAAUGUAGCUUAA.AUCCAAAGCAAGGUACUGAAAAUGCCUAGAUGAGU.GUAUUAA
X14848.1/1-67  GUUAAUGUAGCUUAUAAU..AAAGCAAAGCACUGAAAAUGCUUAGAUGGAUUCAAAA.A
M86497.1/1-66  GUUAAUGUAGCUUAAACU..AAAGCAAGGCACUGAAAAUGCCUAGAUGGGUAUUUA..A
#=GC SS_cons   <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<.......>

M86493.1/1-68  CUCCAUAAACA
M86495.1/1-68  CUCCAUAAACA
M86501.1/1-68  CUCCAUAAACA
X14848.1/1-67  UCCCAUAAACA
M86497.1/1-66  CUCCAUAAACA
#=GC SS_cons   >>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln80.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln80.fa

M86496.1/1-68  GUUAAUGUAGCUUAAAAUU.AAAGCAAGGCACUGAAAAUGCCUAGAUGAGU.AUAUUA.
M86499.1/1-68  GUUAAUGUAGCUUAAACUA.AAGGCAAGGCACUGAAAAUGCCAAGAUGAGUG.UACG..
M86501.1/1-68  GUUAAUGUAGCUUAA.AUCCAAAGCAAGGUACUGAAAAUGCCUAGAUGAGU..GUAUUA
X14848.1/1-67  GUUAAUGUAGCUUAUAAU..AAAGCAAAGCACUGAAAAUGCUUAGAUGGAU.UCAAAA.
M86497.1/1-66  GUUAAUGUAGCUUAAACU..AAAGCAAGGCACUGAAAAUGCCUAGAUGGGU.AUUUA..
#=GC SS_cons   <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<<.......

M86496.1/1-68  .ACUCCAUAAACA
M86499.1/1-68  CACUCCAUGAACA
M86501.1/1-68  .ACUCCAUAAACA
X14848.1/1-67  .AUCCCAUAAACA
M86497.1/1-66  .ACUCCAUAAACA
#=GC SS_cons   >>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln81.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln81.fa

AJ235316.1/1023-1090  GUUAAUGUAGCUUAAAGUCCAAAGCAAGGCACUGAAAAUGCCUAGAUGAGUA
M86493.1/1-68         GUUGAUGUAGCUUAAAACC.AAAGCAAGGCGCUGAAAAUGCCUAGAUGAGUA
M86501.1/1-68         GUUAAUGUAGCUUAA.AUCCAAAGCAAGGUACUGAAAAUGCCUAGAUGAGU.
X14848.1/1-67         GUUAAUGUAGCUUAUAAU..AAAGCAAAGCACUGAAAAUGCUUAGAUGGAUU
M86497.1/1-66         GUUAAUGUAGCUUAAACU..AAAGCAAGGCACUGAAAAUGCCUAGAUGGGUA
#=GC SS_cons          <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<.

AJ235316.1/1023-1090  CACCA.ACUCCAUAAAC.
M86493.1/1-68         UAUGA.ACUCCAUAAACA
M86501.1/1-68         GUAUUAACUCCAUAAACA
X14848.1/1-67         CAAAA.AUCCCAUAAACA
M86497.1/1-66         UUUA..ACUCCAUAAACA
#=GC SS_cons          ......>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln82.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln82.fa

AF008220.1/6975-7046  UCCACAGUAGCUCAGUGGUAGAGCUAUCGGCUGUUAACCGAUCGGUCGCAGG
D13107.1/530-459      UCCUCAGUAGCUCAGUGGUAGAGCGGUCGGCUGUUAACUGACUGGUCGUAGG
X04465.1/90332-90261  UCCUUAGUAGCUCAGUGGUAGAGCGGUCGGCUGUUAACCGAUUGGUCGUAGG
X60981.1/3182-3253    UCCGCAGUAGCUCAGUGGUAGAGCAAUCGGCUGUUAACCGAUUGGUCGCAGG
X73425.1/2369-2440    UCCUCAGUAGCUCAGUGGUAGAGCGGUCGGCUGUUAACUGACUGGUCGUAGG
#=GC SS_cons          <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<<<<<

AF008220.1/6975-7046  UUCGAAUCCUGCCUGUGGAG
D13107.1/530-459      UUCGAAUCCUACUUGGGGAG
X04465.1/90332-90261  UUCAAAUCCUACCUGAGGAG
X60981.1/3182-3253    UUCGAAUCCUGCCUGCGGAG
X73425.1/2369-2440    UUCAAAUCCUACUUGGGGAG
#=GC SS_cons          .......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln83.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln83.fa

AF008220.1/6975-7046      UCCACAGUAGCUCAGUGGUAGAGCUAUCGGCUGUUAACCGAUCGGUCG
AJ271079.2/114727-114656  UCCUCAGUAGCUCAGUGGUAGAGCGGUCGGCUGUUAACCGAUUGGUCG
D13107.1/530-459          UCCUCAGUAGCUCAGUGGUAGAGCGGUCGGCUGUUAACUGACUGGUCG
X04465.1/90332-90261      UCCUUAGUAGCUCAGUGGUAGAGCGGUCGGCUGUUAACCGAUUGGUCG
X73425.1/2369-2440        UCCUCAGUAGCUCAGUGGUAGAGCGGUCGGCUGUUAACUGACUGGUCG
#=GC SS_cons              <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<

AF008220.1/6975-7046      CAGGUUCGAAUCCUGCCUGUGGAG
AJ271079.2/114727-114656  UAGGUUCGAAUCCUACUUGGGGAG
D13107.1/530-459          UAGGUUCGAAUCCUACUUGGGGAG
X04465.1/90332-90261      UAGGUUCAAAUCCUACCUGAGGAG
X73425.1/2369-2440        UAGGUUCAAAUCCUACUUGGGGAG
#=GC SS_cons              <<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln84.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln84.fa

AJ271079.2/114727-114656  UCCUCAGUAGCUCAGUGGUAGAGCGGUCGGCUGUUAACCGAUUGGUCG
D13107.1/530-459          UCCUCAGUAGCUCAGUGGUAGAGCGGUCGGCUGUUAACUGACUGGUCG
X04465.1/90332-90261      UCCUUAGUAGCUCAGUGGUAGAGCGGUCGGCUGUUAACCGAUUGGUCG
X60981.1/3182-3253        UCCGCAGUAGCUCAGUGGUAGAGCAAUCGGCUGUUAACCGAUUGGUCG
X73425.1/2369-2440        UCCUCAGUAGCUCAGUGGUAGAGCGGUCGGCUGUUAACUGACUGGUCG
#=GC SS_cons              <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<

AJ271079.2/114727-114656  UAGGUUCGAAUCCUACUUGGGGAG
D13107.1/530-459          UAGGUUCGAAUCCUACUUGGGGAG
X04465.1/90332-90261      UAGGUUCAAAUCCUACCUGAGGAG
X60981.1/3182-3253        CAGGUUCGAAUCCUGCCUGCGGAG
X73425.1/2369-2440        UAGGUUCAAAUCCUACUUGGGGAG
#=GC SS_cons              <<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln85.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln85.fa

AF008220.1/6975-7046      UCCACAGUAGCUCAGUGGUAGAGCUAUCGGCUGUUAACCGAUCGGUCG
AJ271079.2/114727-114656  UCCUCAGUAGCUCAGUGGUAGAGCGGUCGGCUGUUAACCGAUUGGUCG
D13107.1/530-459          UCCUCAGUAGCUCAGUGGUAGAGCGGUCGGCUGUUAACUGACUGGUCG
X04465.1/90332-90261      UCCUUAGUAGCUCAGUGGUAGAGCGGUCGGCUGUUAACCGAUUGGUCG
X60981.1/3182-3253        UCCGCAGUAGCUCAGUGGUAGAGCAAUCGGCUGUUAACCGAUUGGUCG
#=GC SS_cons              <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<

AF008220.1/6975-7046      CAGGUUCGAAUCCUGCCUGUGGAG
AJ271079.2/114727-114656  UAGGUUCGAAUCCUACUUGGGGAG
D13107.1/530-459          UAGGUUCGAAUCCUACUUGGGGAG
X04465.1/90332-90261      UAGGUUCAAAUCCUACCUGAGGAG
X60981.1/3182-3253        CAGGUUCGAAUCCUGCCUGCGGAG
#=GC SS_cons              <<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln86.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln86.fa

AF008220.1/6975-7046      UCCACAGUAGCUCAGUGGUAGAGCUAUCGGCUGUUAACCGAUCGGUCG
AJ271079.2/114727-114656  UCCUCAGUAGCUCAGUGGUAGAGCGGUCGGCUGUUAACCGAUUGGUCG
D13107.1/530-459          UCCUCAGUAGCUCAGUGGUAGAGCGGUCGGCUGUUAACUGACUGGUCG
X60981.1/3182-3253        UCCGCAGUAGCUCAGUGGUAGAGCAAUCGGCUGUUAACCGAUUGGUCG
X73425.1/2369-2440        UCCUCAGUAGCUCAGUGGUAGAGCGGUCGGCUGUUAACUGACUGGUCG
#=GC SS_cons              <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<

AF008220.1/6975-7046      CAGGUUCGAAUCCUGCCUGUGGAG
AJ271079.2/114727-114656  UAGGUUCGAAUCCUACUUGGGGAG
D13107.1/530-459          UAGGUUCGAAUCCUACUUGGGGAG
X60981.1/3182-3253        CAGGUUCGAAUCCUGCCUGCGGAG
X73425.1/2369-2440        UAGGUUCAAAUCCUACUUGGGGAG
#=GC SS_cons              <<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln87.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln87.fa

AF008220.1/6975-7046      UCCACAGUAGCUCAGUGGUAGAGCUAUCGGCUGUUAACCGAUCGGUCG
AJ271079.2/114727-114656  UCCUCAGUAGCUCAGUGGUAGAGCGGUCGGCUGUUAACCGAUUGGUCG
X04465.1/90332-90261      UCCUUAGUAGCUCAGUGGUAGAGCGGUCGGCUGUUAACCGAUUGGUCG
X60981.1/3182-3253        UCCGCAGUAGCUCAGUGGUAGAGCAAUCGGCUGUUAACCGAUUGGUCG
X73425.1/2369-2440        UCCUCAGUAGCUCAGUGGUAGAGCGGUCGGCUGUUAACUGACUGGUCG
#=GC SS_cons              <<<<<<<..<<<<.......>>>>.<<<<<.......>>>>>.....<

AF008220.1/6975-7046      CAGGUUCGAAUCCUGCCUGUGGAG
AJ271079.2/114727-114656  UAGGUUCGAAUCCUACUUGGGGAG
X04465.1/90332-90261      UAGGUUCAAAUCCUACCUGAGGAG
X60981.1/3182-3253        CAGGUUCGAAUCCUGCCUGCGGAG
X73425.1/2369-2440        UAGGUUCAAAUCCUACUUGGGGAG
#=GC SS_cons              <<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln88.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln88.fa

M86493.1/1-68  GUUGAUGUAGCUUAAAACC.AAAGCAAGGCGCUGAAAAUGCCUAGAUGAGUAUAUGA.A
M86495.1/1-68  GUUAAUGUAGCUUAAAUCU.AAAGCAAGGCACUGAAAAUGCCUAGAUGAGUGCACUA.A
M86496.1/1-68  GUUAAUGUAGCUUAAAAUU.AAAGCAAGGCACUGAAAAUGCCUAGAUGAGUAUAUUA.A
M86501.1/1-68  GUUAAUGUAGCUUAA.AUCCAAAGCAAGGUACUGAAAAUGCCUAGAUGAGU.GUAUUAA
M86497.1/1-66  GUUAAUGUAGCUUAAACU..AAAGCAAGGCACUGAAAAUGCCUAGAUGGGUAUUUA..A
#=GC SS_cons   <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<.......>

M86493.1/1-68  CUCCAUAAACA
M86495.1/1-68  CUCCAUAAACA
M86496.1/1-68  CUCCAUAAACA
M86501.1/1-68  CUCCAUAAACA
M86497.1/1-66  CUCCAUAAACA
#=GC SS_cons   >>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln89.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln89.fa

AJ235316.1/1023-1090  GUUAAUGUAGCUUAAAGUCCAAAGCAAGGCACUGAAAAUGCCUAGAUGAGUA
M86493.1/1-68         GUUGAUGUAGCUUAAAACC.AAAGCAAGGCGCUGAAAAUGCCUAGAUGAGUA
M86496.1/1-68         GUUAAUGUAGCUUAAAAUU.AAAGCAAGGCACUGAAAAUGCCUAGAUGAGUA
M86501.1/1-68         GUUAAUGUAGCUUAA.AUCCAAAGCAAGGUACUGAAAAUGCCUAGAUGAGU.
M86497.1/1-66         GUUAAUGUAGCUUAAACU..AAAGCAAGGCACUGAAAAUGCCUAGAUGGGUA
#=GC SS_cons          <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<.

AJ235316.1/1023-1090  CACCA.ACUCCAUAAAC.
M86493.1/1-68         UAUGA.ACUCCAUAAACA
M86496.1/1-68         UAUUA.ACUCCAUAAACA
M86501.1/1-68         GUAUUAACUCCAUAAACA
M86497.1/1-66         UUUA..ACUCCAUAAACA
#=GC SS_cons          ......>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln90.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln90.fa

AJ235316.1/1023-1090  GUUAAUGUAGCUUAAAGUCCAAAGCAAGGCACUGAAAAUGCCUAGAUGAGUA
M86493.1/1-68         GUUGAUGUAGCUUAAAACC.AAAGCAAGGCGCUGAAAAUGCCUAGAUGAGUA
M86495.1/1-68         GUUAAUGUAGCUUAAAUCU.AAAGCAAGGCACUGAAAAUGCCUAGAUGAGUG
M86501.1/1-68         GUUAAUGUAGCUUAA.AUCCAAAGCAAGGUACUGAAAAUGCCUAGAUGAGU.
M86497.1/1-66         GUUAAUGUAGCUUAAACU..AAAGCAAGGCACUGAAAAUGCCUAGAUGGGUA
#=GC SS_cons          <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<.

AJ235316.1/1023-1090  CACCA.ACUCCAUAAAC.
M86493.1/1-68         UAUGA.ACUCCAUAAACA
M86495.1/1-68         CACUA.ACUCCAUAAACA
M86501.1/1-68         GUAUUAACUCCAUAAACA
M86497.1/1-66         UUUA..ACUCCAUAAACA
#=GC SS_cons          ......>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln91.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln91.fa

AJ235316.1/1023-1090  GUUAAUGUAGCUUAAAGUCCAAAGCAAGGCACUGAAAAUGCCUAGAUGAGUA
M86493.1/1-68         GUUGAUGUAGCUUAAAACC.AAAGCAAGGCGCUGAAAAUGCCUAGAUGAGUA
M86495.1/1-68         GUUAAUGUAGCUUAAAUCU.AAAGCAAGGCACUGAAAAUGCCUAGAUGAGUG
M86496.1/1-68         GUUAAUGUAGCUUAAAAUU.AAAGCAAGGCACUGAAAAUGCCUAGAUGAGUA
M86497.1/1-66         GUUAAUGUAGCUUAAACU..AAAGCAAGGCACUGAAAAUGCCUAGAUGGGUA
#=GC SS_cons          <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<.

AJ235316.1/1023-1090  CACCAACUCCAUAAAC.
M86493.1/1-68         UAUGAACUCCAUAAACA
M86495.1/1-68         CACUAACUCCAUAAACA
M86496.1/1-68         UAUUAACUCCAUAAACA
M86497.1/1-66         UUUA.ACUCCAUAAACA
#=GC SS_cons          .....>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln92.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln92.fa

AJ235316.1/1023-1090  GUUAAUGUAGCUUAAAGUCCAAAGCAAGGCACUGAAAAUGCCUAGAUGAGUA
M86493.1/1-68         GUUGAUGUAGCUUAAAACC.AAAGCAAGGCGCUGAAAAUGCCUAGAUGAGUA
M86495.1/1-68         GUUAAUGUAGCUUAAAUCU.AAAGCAAGGCACUGAAAAUGCCUAGAUGAGUG
M86496.1/1-68         GUUAAUGUAGCUUAAAAUU.AAAGCAAGGCACUGAAAAUGCCUAGAUGAGUA
M86501.1/1-68         GUUAAUGUAGCUUAA.AUCCAAAGCAAGGUACUGAAAAUGCCUAGAUGAGU.
#=GC SS_cons          <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<.

AJ235316.1/1023-1090  CACCA.ACUCCAUAAAC.
M86493.1/1-68         UAUGA.ACUCCAUAAACA
M86495.1/1-68         CACUA.ACUCCAUAAACA
M86496.1/1-68         UAUUA.ACUCCAUAAACA
M86501.1/1-68         GUAUUAACUCCAUAAACA
#=GC SS_cons          ......>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln93.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln93.fa

AJ235316.1/1023-1090  GUUAAUGUAGCUUAAAGUCCAAAGCAAGGCACUGAAAAUGCCUAGAUGAGUA
M86495.1/1-68         GUUAAUGUAGCUUAAAUCU.AAAGCAAGGCACUGAAAAUGCCUAGAUGAGUG
M86496.1/1-68         GUUAAUGUAGCUUAAAAUU.AAAGCAAGGCACUGAAAAUGCCUAGAUGAGUA
M86501.1/1-68         GUUAAUGUAGCUUAA.AUCCAAAGCAAGGUACUGAAAAUGCCUAGAUGAGU.
M86497.1/1-66         GUUAAUGUAGCUUAAACU..AAAGCAAGGCACUGAAAAUGCCUAGAUGGGUA
#=GC SS_cons          <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<<.

AJ235316.1/1023-1090  CACCA.ACUCCAUAAAC.
M86495.1/1-68         CACUA.ACUCCAUAAACA
M86496.1/1-68         UAUUA.ACUCCAUAAACA
M86501.1/1-68         GUAUUAACUCCAUAAACA
M86497.1/1-66         UUUA..ACUCCAUAAACA
#=GC SS_cons          ......>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln94.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln94.fa

J04502.1/2903-2830    GCGCUCUUAGUUCAGUUUGGUAGAACGCGGGUCUCCAAAACCCGAUGUCGUA
M20969.1/1-74         GCGCUUUUAGUUCAGUUCGGUAGAACGUAGGUCUCCAAAACCUAAUGUCGUA
X05395.1/365-438      GCGCUCUUUGUUCAGUUCGGUAGAACGCGGGUCUCCAAAACCCGAUGUCGUA
Z00044.1/68888-68815  GCGCUCUUAGUUCAGUUCGGUAGAACGUGGGUCUCCAAAACCCGAUGUCGUA
M22010.1/2934-3006    GCGCUUUUAGUUCAAUU.GGUAGAACGUAGGUCUCCAAAACCUGAUGUAGUA
#=GC SS_cons          <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<<<

J04502.1/2903-2830    GGUUCAAAUCCUACAGAGCGUG
M20969.1/1-74         GGUUCAAAUCCUACAGAGCGUG
X05395.1/365-438      GGUUCAAAUCCUACAGAGCGUG
Z00044.1/68888-68815  GGUUCAAAUCCUACAGAGCGUG
M22010.1/2934-3006    GGUUCGAAUCCUACAGAGCGCG
#=GC SS_cons          <<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln95.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln95.fa

M20960.1/1-74           ACCUACUUAACUCAGUGGUUUAGAGUAUCGCUUUCAUACGGCGAGAGUCA
M16843.1/2824-2752      GCCUACUUAACUCAGUGGUU.AGAGUAUUGCUUUCAUACGGCGGGAGUCA
X12889.1/644-572        ACCUACUUAACUCAGUGGUU.AGAGUAUUGCUUUCAUACGGCAGGAGUCA
X61698.1/1470-1542      ACCUACUUAACUCAGUGGUU.AGAGUACUGCUUUCAUACGGCGGGAGGCA
Y08502.1/137669-137741  ACCUACUUGACUCAGCGGUU.AGAGUAUCGCUUUCAUACGGCGAGAGUCA
#=GC SS_cons            <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>.....<

M20960.1/1-74           UUGGUUCAAAUCCAAUAGUAGGUA
M16843.1/2824-2752      UUGGUUCAAAUCCAAUAGUAGGUA
X12889.1/644-572        UUGGUUCAAAUCCAAUAGUAGGUA
X61698.1/1470-1542      UUGGUUCAAAUCCAAUAGUAGGUA
Y08502.1/137669-137741  UUGGUUCAAAUCCAAUAGUAGGUA
#=GC SS_cons            <<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln96.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln96.fa

AC005783.1/27398-27326    GUUUCCGUAGUGUAGCGGUUAUCACAUUCGCCUCACACGCGAAAGGUC
AC008443.10/38881-38809   GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUAACACGCGAAAGGUC
AC008443.10/43006-42934   GUUUCCGUAGUGUAGUGGUUAUCACGUUCGCCUCACACGCGAAAGGUC
AC009461.5/128651-128579  GUUUCCGUGGUGUAGUGGUUAUCACAUCCGCCUAACACGCGGAAGGCC
X04821.1/1-73             GUUUCUGUAGUGUAGCGGUUAUCACGUUCGCCUCACAUGCGAAAGGUC
#=GC SS_cons              <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....

AC005783.1/27398-27326    CCCGGUUCGAUCCCGGGCGGAAACA
AC008443.10/38881-38809   CCCGGUUCGAAACCGGGCGGAAACA
AC008443.10/43006-42934   CCCGGUUCGAAACCGGGCGGAAACA
AC009461.5/128651-128579  CCCGGUUCAAUCCCGGGCGGAAACA
X04821.1/1-73             CCCGGUUCGAAACCGGGCAGAAACA
#=GC SS_cons              <<<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln97.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln97.fa

AF041468.1/40566-40494  GGGGGUAUAGCUCAGUUGGUAGAGCGCUGCCUUUGCACGGCAGAUGUCAG
J01395.1/3006-3078      GGGGAUAUAGCUCAGUUGGUAGAGCGCUGCCUUUGCAAGGCAGAUGUCAG
M19493.1/340-412        GGGGGUAUAGCUCAGUUGGUAGAGCGCUGCCUUUGCAAGGCAGAUGUCAG
X15768.1/211-283        GGGGGUAUAGCUCAGUUGGUAGAGCGCUGCCUUUGCAAGGCAGUGGUCAG
X54300.1/105-177        GGGGGUAUAGCUUAGUUGGUAGAGCGCUGCUUUUGCAAGGCAGAUGUCAG
#=GC SS_cons            <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<

AF041468.1/40566-40494  GGGUUCGAGUCCCCUUACCUCCA
J01395.1/3006-3078      CGGUUCGAAUCCGCUUAUCUCCA
M19493.1/340-412        CGGUUCGAGUCCGCUUACCUCCA
X15768.1/211-283        CGGUUCGAGUCCGCUUACCUCCA
X54300.1/105-177        CGGUUCGAAUCCGCUUACCUCCA
#=GC SS_cons            <<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005|BRAliBaseII/data-set1/tRNA/unaligned/aln98.fa
#=GF ID  tRNA|BRAliBaseII/data-set1/tRNA/unaligned/aln98.fa

AC008670.6/83725-83795  ACUUUUAAAGGAUAACAGC.CAUCCGUUGGUCUUAGGCCCCAAAAAUUUU
D85289.1/587-657        ACUUUUAAAGGAUAACAGC.UAUCCAUUGGCCUUAGGAGUCAAAAAUAUU
V00654.1/12038-12108    ACUUUUAAAGGAUAGUAGUUUAUCCGUUGGUCUUAGGAACCAAAA.AAUU
M22656.1/587-656        ACUUUUAAAGGAUAGAAGU.AAUCCAUCGGUCUUAGGAACCGAAA.AAUU
M22657.1/587-656        ACUUUUAAAGGAUAGAAGU.AAUCCAUUGGCCUUAGGAGCCAAAA.AAUU
#=GC SS_cons            <<<<<<<..<<<<........>>>>.<<<<<.......>>>>>....<<<

AC008670.6/83725-83795  GGUGCAACUCCAAAUAAAAGUA
D85289.1/587-657        GGUGCAACUCCAAAUAAAAGUA
V00654.1/12038-12108    GGUGCAACUCCAAAUAAAAGUA
M22656.1/587-656        GGUGCAACUCCAAAUAAAAGUA
M22657.1/587-656        GGUGCAACUCCAAAUAAAAGUA
#=GC SS_cons            <<.......>>>>>>>>>>>>.
//
