# STOCKHOLM 1.0

#=GF AC  RF00001:0
#=GF ID  5S_rRNA:0

U39694.1/9296-9392  .....GCUA.AUAUCGCUGUGGAAACACCUGGAACCAUCCCGAACCCAGC.AGU
M35167.1/2-111      UCCGGUGACUUUACGCGUGAGGAAACACUCGUUCCCAUUCCGAACACGAC.AGU
AJ131602.1/3-115    CCUGAUGACCAUAGCGACGUGGUACCACUCCUUCCCAUCCCGAACAGGAC.AGU
X52302.1/2-117      GCUGGUGGCUAUGGCGGAAGGGCCACACCCGAUCCCAUCCCGAACUCGGU.CGU
Y00159.1/2-117      CUUGGCGACUAUAGCGAUUUGGAACCACCUGAUACCAUCUCGAACUCAGA.AGU
M58387.1/5-112      ....ACGGCCACAGUCAGCUGAAAACUGGGCAUCCCGUCC.GCUCUGCCAUACA
X67494.1/1-118      AUCCUCGGCCAUAGAAUGACGAAAACGACGCGUCCCGUCC.GAUCUGCGA.AUC
M36316.1/2-120      UCUUACGGCCAUUCACACCAGAAAGCACCAAAUCCCGUCC.GAUCUUUGA.AGU
X02706.1/2-120      UGGAUCGUUCAAACCUUCAAGGCCCCUCCCCAUCCCAUCA.GCACUGGGA.AGA
X05535.1/1-118      AGGAACGGCCAUACCACGUCGAUCGCACCACAUCCCGUCC.GCUCUGUGA.AGU
#=GC SS_cons        <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>...>>

U39694.1/9296-9392  UAAGCACAGUGGAGCUAAAU..GUA..G..G.UAGUAAUACUG....AG.AAUA
M35167.1/2-111      UAAGCUCCCG.CGGCCGAUGA..UAGUGCC..CA.CCA....GCGUGAA.AGUA
AJ131602.1/3-115    GAAACGACUUUGCGCCGAUGA..UAGUGC...GGGU.UCCC.GUGUGAA.AGUA
X52302.1/2-117      UAAGACUUCCAGCGCCGAUG..GUACUGCAG.GGGCGACCCUGUGGGAG.AGUA
Y00159.1/2-117      GAAACAUUUCCGCGCC.AAUGA.UAGUGUGA.GGCUU.CCUCAUGCGAA.AGUA
M58387.1/5-112      UAAGCAGUUGAACGGCAGAUUAGUACCACGGUGGGUGACCACCUGGGAAUCCCU
X67494.1/1-118      UAAGCGUCGUAUCGCUAGGUUAGUACCAAGGUGGGGGACCACUUGGGAAUCCCU
M36316.1/2-120      UAAGCUGGUGAUGGCGUCGUCAGUACUGUGGUGGGGGACCACACGGGAAUACGG
X02706.1/2-120      UAAGCCUGAAUGGGCUGAACUAGUAGUACGGUGGGGGACCACGUGCGAAUCCUC
X05535.1/1-118      UAAGCGACGUCGGGCCAGGCUAGUACUACGGUGGGGGACCACGUGGGAAGCCCU
#=GC SS_cons        ....>>>>>..>><<<.<<....<.<<.....<<....>>.....>>.>..>>.

U39694.1/9296-9392  GGU.A..AGCA...
M35167.1/2-111      GGUUAUCGCCGGAC
AJ131602.1/3-115    GGUCAUCGUCAGGC
X52302.1/2-117      GGACGCCGCCAGC.
Y00159.1/2-117      GGUCAUCGCCAGGA
M58387.1/5-112      GCU.GC........
X67494.1/1-118      AGU.GCCGAGGUU.
M36316.1/2-120      CGU.GCCGUAGGUC
X02706.1/2-120      AGU.GACGACCUGG
X05535.1/1-118      GGU.GCUGUUCCU.
#=GC SS_cons        >>>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001:1
#=GF ID  5S_rRNA:1

X14441.1/5-123  G..GGCGGCCAGAGCGGUGAGGUUCCACCCGUA.CCCAUCCCGAACACGGAAGUUAAG
M36188.1/5-125  UUUGGCGCC.AUAGCGGCAGUGUAACUCCUGUA.CCCAUCCCGAACACAGUAGAUAAG
S73542.1/3-119  UUCGGCGGCCAUAGCGAGAGGGAAACGCCCGGU.CACAUUCCGAACCCGGAAGCUAAG
X12884.1/1-117  CUUGGCGGUCAUAGCGAAGAGGUCACACCCGUU.CCCAUCCCGAACACGGUCGUUAAG
X00081.1/2-117  UUUGGUCAUCAUUGCGAUGGAGAUACACCUGUU.CCCAUGUCGAACACAGAAGUUAAG
L37446.1/4-117  CUUGGCCUCGAUAGUGCGUCGUACCCACGCGAU.CCCAUCUCGGACUCGGCCGUGAAA
X02241.1/3-119  CCUGGCGACCAUAGCGUUUUGGACCCACCUGAUUUCCAUGCCGAACUCAGAAGUGAAA
K03169.1/1-118  AUCCACGGCCAUAGGACCUUGAAAACACCGCAU.CCCGUCC.GAUCUGCGCAGUUAAC
X00998.1/1-119  GUCUACGGCCAUACCACGUUGAAAACACCAGUU.CUCGUCC.GAUCACUGAAGUUAAG
X52048.1/2-120  UGCUACGAUCAUACCACUUAGAAAGCACCCGGU.CCCAUCA.GACCCCGGAAGUUAAG
#=GC SS_cons    <<<<<<<<<....<<.<<<<<...<<..<<<<<.<.......>>..>>>>..>>....

X14441.1/5-123  CUCGCCUGCGUUCUGGUCAGUACUGGAGUGAGCGAUCCUCUGGGAAAUCCAGUUC..G
M36188.1/5-125  CCUGCCCGCGUUCCUUACUGUACUGAAGUGUGCGAGCCUUCGGGAACUCUGGAUC..G
S73542.1/3-119  ACUCUCAGCG.CCGAUG..GUACUGCAG.GGGGGACCCUGUGGGAG.AGUAGG..ACA
X12884.1/1-117  CUCUUCUGUG.CCGAAG..GUAAUUGGG.GGCUGUCCCCCUGUGAG.AGUAGG..UCA
X00081.1/2-117  UCCAUCUACG...GCGGAAGUACUUGG..GGGUUGCCCCCUGGGAGAUAUGCG...AG
L37446.1/4-117  CCAGACUGCG.CCGAUG..GUACUAAC.UGC.UAA..GCGUUGGAAGAGUAGG..UCG
X02241.1/3-119  CGAAAUAGCG.CCGAUG..GUAGUGUG..GGGUUUCCCCAUGUGAG.AGUAGG..ACA
K03169.1/1-118  CAGGGUGCCG.CCUAGUUAGUACCACGGUGGGGGACCACGCGGGAAUCCUAGG..U.G
X00998.1/1-119  CAACGUCGGG.CCCGGUUAGUACUUGGAUGGGUGACCGCCUGGGAAUACCGGG..U.G
X52048.1/2-120  CUGAGUUGGG.CUGGACUAGUACUGGAUUCAGGAAUGAUCUGGGAAUCCCCAG..U.G
#=GC SS_cons    >>>>>..>><.<<.<<....<.<<.....<<....>>.....>>.>..>>.>>..>.>

X14441.1/5-123  CCGCCCCU.
M36188.1/5-125  CUGCCAUAC
S73542.1/3-119  CCGCCGGAC
X12884.1/1-117  CUGCCAGGC
X00081.1/2-117  UGGCCAAGU
L37446.1/4-117  CUGCCAAG.
X02241.1/3-119  UCGCCAGGC
K03169.1/1-118  CUGUGGUU.
X00998.1/1-119  CUGUAGACU
X52048.1/2-120  UCGUAGUGU
#=GC SS_cons    >>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001:2
#=GF ID  5S_rRNA:2

U05019.1/544-658  ..ACCCGGUCAUA...GUGAGCGGGUAACACCCGGACUCGUUUCGAACCCGGA.AG
X62858.1/1-121    GUUGGCGGUCAUG...GCGUGGGGUUAAUACCUGAUCUCGUUUCGAUCUCAGU.AG
M11546.1/4-118    CCUGGUGGCCAUU...GCGGGGGGCCCGCACCCGAUCCCAUCCCGAACUCGGC.CG
L37449.1/4-118    GCUUGCGCUCGGU...GUGUAGUGUACAUACCCGAUCCCAUCCCGAGCUCGGC.CG
L37450.1/2-118    .GCCUUGGUCACAUGUGCCCCUGGUACCCACGCGAUCCCAUCUCGAACUCGGC.CG
X00691.1/1-119    ACAUACGACCACA...GGGUGUGGAAAACAGGGCUUCCCGUCC.GCUCAGCCGUAC
X00067.1/1-119    AUCUGGGGCCAUA...CCACAGCCGAAUCACCGCAUCCCGUUC.GAUCUGCGC.AG
X01004.1/1-119    GUUUACGACCAUA...CCAUGCUGAAUAUACCGGUUCUCGUCC.GAUCACCGA.AG
X52052.1/4-118    ..GUUCCAUCAUA...CCAUGCCUACUACGCCGCAUCCCAUCA.GAACUGCGA.AG
M10436.1/2-120    UGGUGCGGUCAUA...CCACCGUUAAUGCACCGGAUCCCGUCG.GAACUCCGU.AG
#=GC SS_cons      <<<<<<<<<.......<<.<<<<<...<<..<<<<<<.......>>..>>>>...>

U05019.1/544-658  UUAAGCCGCUCACGUCAGAGGG.GCC.G.UGGGAUCCGAGAGGGCCCGCAGCCUCU
X62858.1/1-121    UUAAGUCCUGCUGCGUUGUGGGUGUGUACUGCGGUUU.UUU.GCUGUGGGAAGCCC
M11546.1/4-118    UGAAAACCCCCAGCG.CCCAUG...GUACUGUGC.CUC.AA.GGCACGGGAG.AGU
L37449.1/4-118    UGAAACACUCCAGCG.CCUAUU...GUACCGAGG.CU.UAA.GCGGCGGGAG.AGU
L37450.1/2-118    UGAAACCAGGUAGCG.CCGAUG...GUACUGCCG.CU.UAA..GCGCCGGAAGAGU
X00691.1/1-119    UUAAGCCACACGCCG.GGAGGU.UAGUAGUUGGGUGGGUGACCACCAGCGAAUCCC
X00067.1/1-119    UUAAAUGCUGUAGGG.CCGAGU.CAGUAGUGCGGUGGGGGACCACGCGCGAAUACU
X01004.1/1-119    UCAAGCAGCAUAGGG.CCCGGU.UAGUACUUGGAUGGGAGACCGCCUGGGAAUACC
X52052.1/4-118    CUAAGCGGCAUUGGG.CCAGAA.UAGUACUGGGAUGGGUGACCUCCCGGGAAGUCC
M10436.1/2-120    UUAAGCGCGCUUGGG.CCGGAA.UAGUACUGGGAUGGGUGACCUCCCGGGAAGUCC
#=GC SS_cons      >....>>>>>..>><.<<.<<.....<.<<.....<<....>>.....>>.>..>>

U05019.1/544-658  CUGA...GCUGGGAU..
X62858.1/1-121    ACUUC..ACUGCCAGCA
M11546.1/4-118    AGG..UCGCCGCCAGGU
L37449.1/4-118    CGG..UCAGCGCCAGGG
L37450.1/2-118    AGGG.U.GCCGCCAAGG
X00691.1/1-119    UUC..U.GUUGUAUGU.
X00067.1/1-119    CUGG.U.GCCCCAGGU.
X01004.1/1-119    GGG..U.GUUGUAGGCA
X52052.1/4-118    UGG..U.GUGGAACC..
M10436.1/2-120    CGG..U.GCCGCGCCCA
#=GC SS_cons      .>>..>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001:3
#=GF ID  5S_rRNA:3

Z50076.1/4-120      GUCGGUGGCGACAGCGGGGAGGGUC.CGCCCGGUCCCAUACCGAACCCGGAAGC
X55253.1/3-119      UUCGGUGGUCAUAGCGUUAGGGAAA.CGCCCGGUUACAUUCCGAACCCGGAAGC
M33888.1/3-119      UACGGCGGCCAUAGCGGCAGGGAAA.CGCCCGGUCCCAUUCCGAACCCGGAAGC
M34775.1/1-115      CCUGGUGGCCAUUGCGAGGAGCCCC.AACCCGAUCCCAUCCCGAACUCGGCCGU
X03902.1/1-114      .CUGGUGGCCUGAGCGGUGUGCCCAGAACCCGAUCCCAUCUCGAACUCGGCCGU
M11546.1/4-118      CCUGGUGGCCAUUGCGGGGGGCCCG.CACCCGAUCCCAUCCCGAACUCGGCCGU
L37449.1/4-118      GCUUGCGCUCGGUGUGUAGUGUACA.UACCCGAUCCCAUCCCGAGCUCGGCCGU
X79704.1/3397-3511  CCUGGCGGCCAUAGCGAGCGGGCCC.CACCUGCUUCCAUUCCGAACUCAGAAGU
X02246.1/3-118      CCUGGCGACCAUAGCGUUUUGGACC.CACCUGAUUCCAUGCCGAACUCAGAAGU
X06834.1/1-119      GUUUACGGCCAUAUCACGUUGAAAA.CGCCAGUUCUCGUCC.GAUCACUGAAGC
#=GC SS_cons        <<<<<<<<<....<<.<<<<<...<.<..<<<<<<.......>>..>>>>..>>

Z50076.1/4-120      UAAGCUCCCCAGCG.CCGAUG..GUACUGCAC.CCGGUGGGGUGUGGGAG.AGU
X55253.1/3-119      UAAGCCUUUCGACG.CCGAUG..GUACUGCA.UGGGGGACCGUGUGGGAG.AGU
M33888.1/3-119      UAAGCCUGCCAGCG.CCGAUG..GUACUGCACUC.GUGAGGGUGUGGGAG.AGU
M34775.1/1-115      UAAACUCCUCAGCG.CCGAUG..GUACUAUG.UCUC.AA.GACCUGGGAG.AGU
X03902.1/1-114      UAAACACACCAGCG.CCCAUG..GUACUGUG.UCUC.AA.GACACGGGAG.AGU
M11546.1/4-118      GAAAACCCCCAGCG.CCCAUG..GUACUGUGC.CUC.AA.GGCACGGGAG.AGU
L37449.1/4-118      GAAACACUCCAGCG.CCUAUU..GUACCGAGG.CU.UAA.GCGGCGGGAG.AGU
X79704.1/3397-3511  GAAAACGCUUAAGGCCCGAUGA..UAGUGUGG.GU..CU.CCCAUGCGAA.AGU
X02246.1/3-118      GAAACGAAACAGCG.UCGAUG..GUAGUGUG..GGGUUUCCCCAUGUGAG.AGU
X06834.1/1-119      UAAGCAACGUCGAG.CCUGGUUAGUACUUGGAUGGGUGACCGCCUGGGAAUACC
#=GC SS_cons        ....>>>>>..>><.<<.<<....<.<<.....<<....>>.....>>.>..>>

Z50076.1/4-120      AGGACACCGCCGACA
X55253.1/3-119      AGGACGCCGCCGAAC
M33888.1/3-119      AGGUCACCGCCGAAC
M34775.1/1-115      AGGUCGCUGCCAGGC
X03902.1/1-114      CGGU.GCCGCCAGGC
M11546.1/4-118      AGGUCGCCGCCAGGU
L37449.1/4-118      CGGUCAGCGCCAGGG
X79704.1/3397-3511  AGGUCACCGCCAGUU
X02246.1/3-118      AGAACAUCGCCAGGC
X06834.1/1-119      AGGU.GCUGUAGACU
#=GC SS_cons        .>>>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00001:4
#=GF ID  5S_rRNA:4

X62859.1/3-124    GUUGGCGGCCAUAGCGGAGGGGCCAUACCUGGUCUCGUUUCGAUCCCAGA.AGUGA
M16172.1/3-119    UACGGCGGUCAUAGCGAAGGGGAAACGCCCGGUCCCAUUCCGAACCCGGA.AGCUA
V00646.1/1-107    .UUGGUGGU.AUAGCAUAGAGGUCACACCUGUUCCCAUGCCGAACACAGA.AGUUA
M34772.1/1-114    .CUGGUGGCCAUUGCGAGGAGCCUGAACCCGACUCCACUCCGAACUCGGC.CGUUA
X02253.1/3-118    CCUGGCGACCAUAGCAUUAUGGACCCACCUGAUCCCAUGCCGAACUCAGA.AGUGA
X00475.1/121-239  GCUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUC.GAACUCCGA.AGUUA
D10526.1/1-121    GGUUGCGGCCAUACCAAGUGGAAAAUACUGUUUCCCGUCC.GAUCAACGUUAGUCA
X06847.1/1-119    AUCUGCGGCCAUACCGCGCUGAACGUUCCGCGUCUCGUCC.GAUCCGCGC.AGACA
AB015590.1/1-119  GCUUACGGCCAUACCACCCUGAGCACGCCCGAUCUCGUCU.GAUCUCGGA.AGCUA
X00378.1/2-120    UGGUGCGGUCAUACCAGCGCUAAUGCACCGGAUCCCAUCA.GAACUCCGA.AGUUA
#=GC SS_cons      <<<<<<<<<....<<.<<<<<...<<..<<<<<<.......>>..>>>>...>>..

X62859.1/3-124    AGUCCUCCUGCGUUUUGUUGUUGUACUGUGG.ACGAGAGUCUAUGGGAAGCUCAUA
M16172.1/3-119    AGCCCUUCAGCG.CCGAUG...GUACUGCACUC.GCCAGGGUGUGGGAG.AGUAGG
V00646.1/1-107    AGCUCUAUUACG.GUGAAG.A..UAUUAC....U..GA..U.GUGAGAA.AAUAGC
M34772.1/1-114    AACUCCUCAGCG.CCGAUG...GUACUAUG.UCUC.AA.GACCUGGGAG.AGUAGG
X02253.1/3-118    AACGUAAUAGCG.CCGAUG...GUAGUGUG..GGGUUUCCCCAUGUGAG.AGUAGG
X00475.1/121-239  AGCGCCUUAAGG.CUGGGU.UAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAG
D10526.1/1-121    AGCCACUUAGGG.CCACAGUGAGUAAUACAGUGGGAGACCAUGUGUGAAAUUGUGG
X06847.1/1-119    AGCAUCGCAGGG.GCCAGA.GAGUAUUGACGUGGGUGACCAGUCGAGAACACUGUG
AB015590.1/1-119  AGCAGGGUCGGG.CCUGGU.UAGUACUUGGAUGGGAGACCGCCUGGGAAUACCAGG
X00378.1/2-120    AGCGCGCUUGGG.CCAGAA.CAGUACUGGGAUGGGUGACCUCCCGGGAAGUCCUGG
#=GC SS_cons      ..>>>>>..>><.<<.<<.....<.<<.....<<....>>.....>>.>..>>.>>

X62859.1/3-124    AC..GCUGCCGGCC
M16172.1/3-119    ..ACGCCGCCGGAC
V00646.1/1-107    ..AAGCUGCCAGUU
M34772.1/1-114    ..UCGCUGCCAGGU
X02253.1/3-118    ..ACAUCGCCAGGC
X00475.1/121-239  ..U.GUCGACAGCC
D10526.1/1-121    ..U.GCUGCAAUCU
X06847.1/1-119    C.U.GCCGCAGGU.
AB015590.1/1-119  ..U.GCUGUAAGCU
X00378.1/2-120    ..U.GCUGCACCCU
#=GC SS_cons      ..>.>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00002:0
#=GF ID  5_8S_rRNA:0

AF093014.1/662-809  CACUUUAAGUAAUGGAUGUCUUGGU.UCUCAUAACGAUGAAGGACGCAGCAAAG
U21939.1/68-218     CAGUCUUAACGAUGGAUGUCUUGGU.UCCUACAGCGAUGAAGGCCGCAGCAAAA
X54512.1/4422-4569  AACUUUCAACGGUGGAUAUCUAGGU.UCCCGUGACGAUGAAGAACGCAGCGAAA
M14649.1/2015-2169  AACUUUCAGCGACGGAUGUCUCGGC.UCGAACAACGAUGAAGGGCGCAGCGAAA
X53361.2/1206-1368  ACCUGUU.GUGGUGGAUGUCUUGGC.CCAGGUUCUGAGGAAGGACACAGCAGCC
M63701.1/247-415    AACGUGUCGCGAUGGAUGACUUGGCUUCCUAUUUCGUUGAAGAACGCAGCAAAG
U13369.1/6624-6776  GACUCUUAGCGGUGGAUCACUCGGC.UCGUGCGUCGAUGAAGAACGCAGCUAGC
AF158724.1/274-427  GACUCUUAACGGUGGAUCACUCGGC.UCGCGAGUCGAUGAAGGACGCAGCCAAG
X80212.2/2104-2256  AACUCUCAGCAACGGAUAUCUUGGC.UCUUGCAACGAUGAAGAACGCAGCGAAA
Y07978.1/48-201     AACUUUCAGCGACGGAUAUCUAGGC.UCCCACAACGAUGAAGAACGCAGCGAAA
#=GC SS_cons        .................................<<.<<......<<<<<....>

AF093014.1/662-809  .UGCGAUAAGCAAUGUGAACUGCAU.AAUUCUAUGAACAAUCAGAU........
U21939.1/68-218     .UGCGAUACGCAAUGAAAAUUGCAGUGA..CUGUGAAUCAUCAGAA........
X54512.1/4422-4569  .UGCGAUACGCAAUGCGAAUUGCAG.AA..CCGCGAGUCAUCAGAU........
M14649.1/2015-2169  .UGUGAUAAGCAAUGUGAAUUGCAG.AAUUCCGUGAACCAAUAGGG........
X53361.2/1206-1368  UUGCGAUACGUUCGGUGAUACGCAG.AGU.CUUGUGAUCUGGACAAAGGAACAG
M63701.1/247-415    .UGCGAUAAGUGGUAUCAAUUGCAG.AAU.CAUUCAAUUACCGAAU........
U13369.1/6624-6776  .UGCGAGAAUUAAUGUGAAUUGCAG.GAC.ACAUUGAUCAUCGACA........
AF158724.1/274-427  .UGCGAGAAGUAAUGUGAAUUGCAG.AAC.ACAUUGAACGUCGACC........
X80212.2/2104-2256  .UGCGAUACGUAGUGUGAAUUGCAG.AAUUCCGCGAAUCAUCGAGU........
Y07978.1/48-201     .UGCGAUACGUCUUGCGACUUGCAG.AACCCAGUGAAUCAUCAAAC........
#=GC SS_cons        .>>>>.<<<<<<...<<...........>.>..>>.>>>>>>>>..........

AF093014.1/662-809  CUCUCAACGCAAAUAG.CAGUAAU.......UUAC...........AU..UACU
U21939.1/68-218     UGCUGAAUGUAAACUA.CACCAAUUCC....UUCG.......GGGAAUAGUGGU
X54512.1/4422-4569  CUUUGAACGCAAGUGG.UGGAGGUG......UAAA..........AAC..CUUC
M14649.1/2015-2169  ACUUGAACGUAUACUG.CGCUUUCGGGA...UAUC........CCUGA..AGGC
X53361.2/1206-1368  CUUCGAACGCAACUGGCCAGCAAGGGG....UUCC.......CCCCCG..AGCU
M63701.1/247-415    CUUUGAACGCAAACGG.CGCAUGGGAGAAGCUCCUCAGAGUCAUCCCC..GUGC
U13369.1/6624-6776  CUUCGAACGCACU.UG.CGGCCCCGGG....UUCC.......UCCCGG..GGCU
AF158724.1/274-427  UUCUGAACGCGAAUUG.CGGUCUCGGG....UCAA.......UCCCGG..GACC
X80212.2/2104-2256  UUUUGAACGCAAGUUG.CGCCCGAGG.....CUCG........UCCGA..GGGC
Y07978.1/48-201     CUUCGAACGCACCUUG.CGCUCUCGGG....CAUU........CCCGG..GAGC
#=GC SS_cons        ..................<<<<<<<<<................>>>>>..>>>>

AF093014.1/662-809  AUAUUUAU...AUCAGUGUCU
U21939.1/68-218     ACUCCUAC...AGAA.....A
X54512.1/4422-4569  AUGUUUGU...UUCAGUGUGG
M14649.1/2015-2169  AUGCCUGC...UUCAGUGUCU
X53361.2/1206-1368  GCCUGUGC...GCCAGUGUUG
M63701.1/247-415    AUGCCAUAUUUCUCAGUGUCG
U13369.1/6624-6776  ACGCCUGU...CUGAGCGUCG
AF158724.1/274-427  GCGUCUGC...CUCAGGGUCG
X80212.2/2104-2256  AUUCCUGC...CAGAGCGUCA
Y07978.1/48-201     AUGCUUGU...CGGAGUGUCC
#=GC SS_cons        .....................
//
# STOCKHOLM 1.0

#=GF AC  RF00002:1
#=GF ID  5_8S_rRNA:1

AF093014.1/662-809      CACUUUAAGUAAUGGAUGUCUUGGU.UCUCAUAACGAUGAAGGACGCAGC
X54512.1/4422-4569      AACUUUCAACGGUGGAUAUCUAGGU.UCCCGUGACGAUGAAGAACGCAGC
U58510.1/2022-2198      AACCCU.AGUGAUGGAUGUCUAGGC.UCCCGUAUCGAUGAAGAACGUAGC
X52949.1/857-993        ACGCCCCGCCGGCGGAUGCCUCGGC.CCGGGCGGCGACGAAGAGCGCGGC
Y00055.1/4327-4494      AACGUGUCGCGAUGGAUGACUUGGCUUCCUAUCUCGUUGAAGAACGCAGU
AL049755.2/30863-31016  AACUUUCAGCAACGGAUCUCUUGGC.UCUCGCAUCGAUGAAGAACGCAGC
AF196778.1/2-154        AACUUUAAGCAAUGGAUCACUUGGU.UCUCGCAUCGAUGAAGAACGUAGC
L78065.1/3758-3910      AACCCUAGGCAGGGGAUCACUCGGC.UCAUGGAUCGAUGAAGACCGCAGC
X03680.1/3159-3308      UAGCUUCAGCGAUGGAUCGGUUGCA.UCGAGUAUCGAUGAAGAACGCAGC
X00601.1/3997-4154      AAGCAUAAACGGUGAAUACCUCGAC.UCCUAAAUCGAUGAAGACCGUAGC
#=GC SS_cons            .................................<<.<<......<<<<<.

AF093014.1/662-809      AAAGUGCGAUAAGCAAUGU.....G.AACUG..CAUAAUU........CU
X54512.1/4422-4569      GAAAUGCGAUACGCAAUGC.....G.AAUUG..CAGAA..........CC
U58510.1/2022-2198      AGAAAGCGACAUGCGAUGAUACGCG.CAUAGACCAGGAUUCCGCGGACUC
X52949.1/857-993        GGAGCGCGAGACGCGGUGC.....GGACCCG..CCCGCC.........CC
Y00055.1/4327-4494      AAAGUGCGAUAAGUGGUAU.....C.AAUUG..CAGAAU.........CA
AL049755.2/30863-31016  GAAAUGCGAUACGUAAUGU.....G.AAUUG..CAGAAUU........CC
AF196778.1/2-154        AAAUUGCGAAAAGUAAUGC.....G.AUCUG..CA.ACCU........UU
L78065.1/3758-3910      UAAAUGCGCGUCAGAAUGU.....G.AACUG..CAGGAC.........AC
X03680.1/3159-3308      UUGCUGCGUUACUUACCAC.....G.AAUUG..CAG.AC.........GC
X00601.1/3997-4154      AAACUGCGAUAAUUCACUU.....G.AAUUG..CAGCCU.........AC
#=GC SS_cons            ...>>>>>.<<<<<<...<.....<.............>.........>.

AF093014.1/662-809      AUGAACAAUCAGAUCUCUCAACGCAAAUAGCAGUAAU...........UU
X54512.1/4422-4569      GCGAGUCAUCAGAUCUUUGAACGCAAGUGGUGGAGGUG..........UA
U58510.1/2022-2198      GUGAAUCAUUGAAUCUUCGAACGCAUCUGGCGCUCAGCAGUGGAGCCGUA
X52949.1/857-993        GAGAAGCACCGAC.CCUCGAACGCA....GCGCGC.............CC
Y00055.1/4327-4494      UUCAAUUACCGAAUCUUUGAACGCAAACGGCGCAUGGGAGAAGCUC..UU
AL049755.2/30863-31016  GUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCUUUGGG........UU
AF196778.1/2-154        GCGAAUCAUCGAAUUCUCGAACGCAUCUUGCACCCUUUGG........UC
L78065.1/3758-3910      AU.GAACACCGACACGUUGAACG.AUAUUGCGCAUUGCAC........GA
X03680.1/3159-3308      UUAGAGUGGUGAAAUUUCGAACGCAUA..GCACCAACUGG........GC
X00601.1/3997-4154      UGGGAUAGUUGAAAUGUUGAACGCACAUGAUGACAUCGGUCC......UU
#=GC SS_cons            .>>.>>>>>>>>...................<<<<<<<<<..........

AF093014.1/662-809      AC.........AUUACUAUAUU.UAU..AUCAGUGUCU
X54512.1/4422-4569      AA........AACCUUCAUGUU.UGU..UUCAGUGUGG
U58510.1/2022-2198      GC......AGGCUGAGCAUGCCCUGG..AGUAGUGACA
X52949.1/857-993        CG...........GCGC.CGCC..GC..CUCGGCGCCC
Y00055.1/4327-4494      UUGAGUCAUCCCCGUGCAUGCC.AUAUUCUCAGUGUCG
AL049755.2/30863-31016  CU......ACCAAAGGCAUGCC.UGU..UUGAGUGUCA
AF196778.1/2-154        AU......CCAAUGGGUACGUC.UAG..UUCAGUAUCU
L78065.1/3758-3910      CUC....AGUGCGAUGUACACA.UUU..UUGAGUGCCC
X03680.1/3159-3308      CU......CCAGUUGGUACGUC.UGG..UUCAGGGUUG
X00601.1/3997-4154      UCGG...AUUAGGUGUUAUACU.UGG..GUGAGAGUGG
#=GC SS_cons            ........>>>>>>>>>.....................
//
# STOCKHOLM 1.0

#=GF AC  RF00002:2
#=GF ID  5_8S_rRNA:2

U48228.1/7-166      CAAUCUUAACGAUGGAUGUCUUGGU.UCCUAUAGCGAUGAAGGCCGCAGCAAAG
X53361.2/1206-1368  ACCUGUU.GUGGUGGAUGUCUUGGC.CCAGGUUCUGAGGAAGGACACAGCAGCC
M63701.1/247-415    AACGUGUCGCGAUGGAUGACUUGGCUUCCUAUUUCGUUGAAGAACGCAGCAAAG
X90410.1/15-165     AACUUUCAGCAAUGGAUCUCUUGGC.UCUUGCAUCGAUGAAGAACGCAGCGAAA
AF196778.1/2-154    AACUUUAAGCAAUGGAUCACUUGGU.UCUCGCAUCGAUGAAGAACGUAGCAAAU
L78065.1/3758-3910  AACCCUAGGCAGGGGAUCACUCGGC.UCAUGGAUCGAUGAAGACCGCAGCUAAA
M36008.1/959-1112   GACUCUUAGCGGUGGAUCACUCGGC.UCGUGCGUCGAUGAAGAACGCAGCUAGC
X03680.1/3159-3308  UAGCUUCAGCGAUGGAUCGGUUGCA.UCGAGUAUCGAUGAAGAACGCAGCUUGC
AF307619.1/287-442  GACUCUCGGCAACGGAUAUCUCGGC.UCUCGCAUCGAUGAAGAACGUAGCGAAA
Y07976.1/124-271    CACUUUCAGCAACGGAUGUCUCGGU.UCCCAUAACGAUGAAGAACGCAGCGAAA
#=GC SS_cons        .................................<<.<<......<<<<<....>

U48228.1/7-166      .UGCGAUAUGCAAUGAAAAAUGCA.AUUACUGUGAAUCAUCAGAA........U
X53361.2/1206-1368  UUGCGAUACGUUCGGUGAUACGCAGAGU.CUUGUGAUCUGGACAAAGGAACAGC
M63701.1/247-415    .UGCGAUAAGUGGUAUCAAUUGCAGAAU.CAUUCAAUUACCGAAU........C
X90410.1/15-165     .UGCGAUACGUAAUGUGAAUUGCAG.A..ACGCGAGUCAUCGAAA........U
AF196778.1/2-154    .UGCGAAAAGUAAUGCGAUCUGCA.ACCUUUGCGAAUCAUCGAAU........U
L78065.1/3758-3910  .UGCGCGUCAGAAUGUGAACUGCAGGAC.ACAU.GAACACCGACA........C
M36008.1/959-1112   .UGCGAGAAUUAGUGUGAAUUGCAGGAC.ACAUUGAUCAUCGACA........C
X03680.1/3159-3308  .UGCGUUACUUACCACGAAUUGCAG.AC.GCUUAGAGUGGUGAAA........U
AF307619.1/287-442  .UGCGAUACUUGGUGUGAAUUGCAGAAUCCCGUGAACCAUCGAGU........C
Y07976.1/124-271    .UGCGAUACGUAAUGCGAAACGCAUCAG.UAGUGAGUCAUCGAAA........C
#=GC SS_cons        .>>>>.<<<<<<...<<..........>.>..>>.>>>>>>>>...........

U48228.1/7-166      GCUGAAUGUAAACUA.UACCAUAUUUACCCUUAUGGGCAAAUUAACGUGGUAUU
X53361.2/1206-1368  UUCGAACGCAACUGGCCAGCAAGGGG....UUCC.......CCCCCGAGCUGCC
M63701.1/247-415    UUUGAACGCAAACGG.CGCAUGGGAGAAGCUCCUCAGAGUCAUCCCCGUGCAUG
X90410.1/15-165     UUUGAACGCACAUUG.CACUUGGUGG....CAUU........CCGCCAAGUAUG
AF196778.1/2-154    CUCGAACGCAUCUUG.CACCCUUUGG....UCAU........CCAAUGGGUACG
L78065.1/3758-3910  GUUGAACG.AUAUUG.CGCAUUGCAC....GACUC......AGUGCGAUGUACA
M36008.1/959-1112   UUCGAACGCACCUUG.CGGCCCCGGG....UUCC.......UCCCGGGGCUACG
X03680.1/3159-3308  UUCGAACGCAUA..G.CACCAACUGG....GCCU........CCAGUUGGUACG
AF307619.1/287-442  UUUGAACGCAAGUUG.CGCCCCAAGCC...UUCU.......GGCCGAGGGCACG
Y07976.1/124-271    UUUGAACGCAACUUG.CACUUCCC......UUUG...........GGGAGUAUA
#=GC SS_cons        .................<<<<<<<<<................>>>>>>>>>...

U48228.1/7-166      CCUAC...AGAA.....A
X53361.2/1206-1368  UGUGC...GCCAGUGUUG
M63701.1/247-415    CCAUAUUUCUCAGUGUCG
X90410.1/15-165     UUUGU...UUGAGUGUCU
AF196778.1/2-154    UCUAG...UUCAGUAUCU
L78065.1/3758-3910  CAUUU...UUGAGUGCCC
M36008.1/959-1112   CCUGU...CUGAGGGUCG
X03680.1/3159-3308  UCUGG...UUCAGGGUUG
AF307619.1/287-442  UCUGC...CUGGGUGUCA
Y07976.1/124-271    UCUAU...UGGAGUGUCU
#=GC SS_cons        ..................
//
# STOCKHOLM 1.0

#=GF AC  RF00002:3
#=GF ID  5_8S_rRNA:3

AF093014.1/662-809    CACUUUAAGUAAUGGAUGUCUUGGU.UCUCAUAACGAUGAAGGACGCAGCAA
AF026388.1/2852-3006  AACUUUCAGCAAUGGAUGUCUUGGC.UCACGCAUCGAUGAAGGACGCAGCGA
U21939.1/68-218       CAGUCUUAACGAUGGAUGUCUUGGU.UCCUACAGCGAUGAAGGCCGCAGCAA
X01533.1/5-152        AACUUUCAACGGUGGAUAUCUUGGU.UCCCGUGACGAUGAAGAACGCAGCGA
M63701.1/247-415      AACGUGUCGCGAUGGAUGACUUGGCUUCCUAUUUCGUUGAAGAACGCAGCAA
M36008.1/959-1112     GACUCUUAGCGGUGGAUCACUCGGC.UCGUGCGUCGAUGAAGAACGCAGCUA
X00601.1/3997-4154    AAGCAUAAACGGUGAAUACCUCGAC.UCCUAAAUCGAUGAAGACCGUAGCAA
V01159.1/185-331      ACCGUUGGGCGAUGGAUUGCUUGGU.GCCUGCUUCGACGAAGAGCGCAGUGA
AF468917.1/611-763    AACUCGUAACGGUGGAUGUCUCGGC.UCCUACAUCGAUGAAGAACGUAGCAA
D10840.1/200-355      GACUCUCGGCAACGGAUAUCUCGGC.UCUCACAUCGAUGAAGAACGUAGCGA
#=GC SS_cons          .................................<<.<<......<<<<<...

AF093014.1/662-809    AGUGCGAUAAGCAAUGUGAACUGCAU.AAUUCUAUGAACAAUCAGAUCUCUC
AF026388.1/2852-3006  AAUGCGAUACGCAUUGUGAAUUGCAG.AUUUCAGUGAACCAUCAGAUUUCUG
U21939.1/68-218       AAUGCGAUACGCAAUGAAAAUUGCAGUGA..CUGUGAAUCAUCAGAAUGCUG
X01533.1/5-152        AAUGCGAUACGUAAUGCGAAUUGCAG.AA..CCGCGAGUCAACAGAUCUUUG
M63701.1/247-415      AGUGCGAUAAGUGGUAUCAAUUGCAG.AAU.CAUUCAAUUACCGAAUCUUUG
M36008.1/959-1112     GCUGCGAGAAUUAGUGUGAAUUGCAG.GAC.ACAUUGAUCAUCGACACUUCG
X00601.1/3997-4154    ACUGCGAUAAUUCACUUGAAUUGCAG.CCU.ACUGGGAUAGUUGAAAUGUUG
V01159.1/185-331      AACGCGAUAACUUUUGUGACUCGCA..CUCUCUGUGA.UCAACGUCUCCUUG
AF468917.1/611-763    ACUGCGAAACGUAAUGCGAAUUGCAG.AAC.UCGUGAAUCAUCAAAUUUUUG
D10840.1/200-355      AAUGCGAUACUUGGUGUGAAUUGCAG.AAUCCCGUGAACCAUCGAGUCUUUG
#=GC SS_cons          .>>>>>.<<<<<<...<<...........>.>..>>.>>>>>>>>.......

AF093014.1/662-809    AACGCAAAUAGCAGUAAU.......UUAC...........AU..UACUAUAU
AF026388.1/2852-3006  AACGCACAUGGCGCUGCUGGUA...UUUU........GCCCG..CAGCACGU
U21939.1/68-218       AAUGUAAACUACACCAAUUCC....UUCG.......GGGAAUAGUGGUACUC
X01533.1/5-152        AAAGCAAGUGGUGGAGGUG......UAAA..........AAC..CUUCAUGU
M63701.1/247-415      AACGCAAACGGCGCAUGGGAGAAGCUCCUCAGAGUCAUCCCC..GUGCAUGC
M36008.1/959-1112     AACGCACCUUGCGGCCCCGGG....UUCC.......UCCCGG..GGCUACGC
X00601.1/3997-4154    AACGCACAUGAUGACAUCGGUCC..UUUCGG.....AUUAGG..UGUUAUAC
V01159.1/185-331      AACAUUAG.UGCGGCCUUGCC....UUCG.......GGCACU..GGCCCC..
AF468917.1/611-763    AACGCAAGUGGCGCUCGCGGG....UAAC........CCUGC..GAGCAUGU
D10840.1/200-355      AACGCAAGUUGCGCCCCAAGCC...UUCU.......GGCCGA..GGGCACGU
#=GC SS_cons          ............<<<<<<<<<................>>>>>..>>>>....

AF093014.1/662-809    UUAU...AUCAGUGUCU
AF026388.1/2852-3006  CUGU...UUCAGUGUCU
U21939.1/68-218       CUAC...AGAA.....A
X01533.1/5-152        UUGU...AUUAGUGUGG
M63701.1/247-415      CAUAUUUCUCAGUGUCG
M36008.1/959-1112     CUGU...CUGAGGGUCG
X00601.1/3997-4154    UUGG...GUGAGAGUGG
V01159.1/185-331      ...C...UUGGGAUGCC
AF468917.1/611-763    CUGU...UUGAGUGUCC
D10840.1/200-355      CUGC...CUGGGUGUCA
#=GC SS_cons          .................
//
# STOCKHOLM 1.0

#=GF AC  RF00002:4
#=GF ID  5_8S_rRNA:4

AF093014.1/662-809  CACUUUAAGUAAUGGAUGUCUUGGU.UCUCAUAACGAUGAAGGACGCAGC.AAA
AF223570.1/244-389  AAUUUUCAACGAUGGAUGUCUUGGC.UCCCAUAUCGAUGAAGAACGCAGCUAGA
AF306774.1/466-634  AACGUGUCGCGAUGGAUGACUUGGCUUCCUAUUUCGUUGAAGAACGCAGC.AAA
X99212.1/685-824    AACCCUAGACAGGGGAUCACUUGGC.UCAUGGGUCGAUGAAGACCGCAGC.AAA
AF158724.1/274-427  GACUCUUAACGGUGGAUCACUCGGC.UCGCGAGUCGAUGAAGGACGCAGC.CAA
X00601.1/3997-4154  AAGCAUAAACGGUGAAUACCUCGAC.UCCUAAAUCGAUGAAGACCGUAGC.AAA
V01159.1/185-331    ACCGUUGGGCGAUGGAUUGCUUGGU.GCCUGCUUCGACGAAGAGCGCAGU.GAA
X66325.1/2369-2523  GACUCUCGGCAACGGAUAUCUU.GC.UCUCGCAUCGAUGAAGAACGUAGC.GAA
Y11511.1/115-268    AACUUUUAGCAAUGGAUGUCUUGGG.UCACACAACGAUGAAGAACGCAGC.GAA
D16558.1/2710-2862  AACUUUCAGCGACGGAUGUCUUGGC.UCCCACAACGAUGAAGAACGCAGC.GAA
#=GC SS_cons        .................................<<.<<......<<<<<.....

AF093014.1/662-809  GUGCGAUAAGCAAUGUGAACUGCAUAAUUCUAUGAACAAUCAGAUCUCUCAACG
AF223570.1/244-389  AUGCGAUAUGCAGUGUGAAUUGCAGAA..CCACGAAUCAUCGGAUCUUUGAACG
AF306774.1/466-634  GUGCGAUAAGUGGUAUCAAUUGCAGAAU.CAUUUCAUUGCCCAAUCUUUGAACG
X99212.1/685-824    CUGCGCGUCGCCAUGUGAACUGCAGGAC.ACAU.GAUCAUUGACAUGUUGAACG
AF158724.1/274-427  GUGCGAGAAGUAAUGUGAAUUGCAGAAC.ACAUUGAACGUCGACCUUCUGAACG
X00601.1/3997-4154  CUGCGAUAAUUCACUUGAAUUGCAGCCU.ACUGGGAUAGUUGAAAUGUUGAACG
V01159.1/185-331    ACGCGAUAACUUUUGUGACUCGCA.CUCUCUGUGA.UCAACGUCUCCUUGAACA
X66325.1/2369-2523  AUGCGAUACUUGGUGUGAAUUGCAAGAUCCCGUGAACCAUCGAGUCUUUGAACG
Y11511.1/115-268    AUGCGAUACGUAAUGCGAAUUGCAGAACUUCGUGAAUCAUCAAAAUUUUGAACG
D16558.1/2710-2862  AUGCGAUACGUCUUGCGACUUGCAGAAUCCAGUGAAUCAUCAAAACUUUGAACG
#=GC SS_cons        >>>>>.<<<<<<...<<..........>.>..>>.>>>>>>>>...........

AF093014.1/662-809  CAAAUAGCAGUAAU.........UUAC.........AUUACUAUAUU...UAUA
AF223570.1/244-389  CAACUGGCGCUGAU.........AAAC..........UCAGCAUACU...UGCU
AF306774.1/466-634  CAAACGGCGCAUGGGAGAAGCUCUCUCGAGCCAUCCCCGUGCAUGCCACAUUUC
X99212.1/685-824    CAUAUUGCGCCUUA.........UACA.........UUUGGU.UCUC...UUUA
AF158724.1/274-427  CGAAUUGCGGUCUCGGG......UCAA.....UCCCGGGACCGCGUC...UGCC
X00601.1/3997-4154  CACAUGAUGACAUCGGUCC....UUUCGG...AUUAGGUGUUAUACU...UGGG
V01159.1/185-331    UUAG.UGCGGCCUUGCC......UUCG.....GGCACUGGCCCC........CU
X66325.1/2369-2523  CAAGUUGCGCCCCAAGCC.....UUCU.....GGCCGAGGGCACGUC...UGCC
Y11511.1/115-268    CACAUUGCGCUACUGAG......UAAU......CUCAGUAGCAUGCU...UAUC
D16558.1/2710-2862  CAUC.UGCG.UUCCGGGA.....UAUG......CCUGGGAGCAUGCU...UGUC
#=GC SS_cons        ........<<<<<<<<<................>>>>>>>>>............

AF093014.1/662-809  UCAGUGUCU
AF223570.1/244-389  UCAGUGUGC
AF306774.1/466-634  UCAGUGUCG
X99212.1/685-824    UAA.....U
AF158724.1/274-427  UCAGGGUCG
X00601.1/3997-4154  UGAGAGUGG
V01159.1/185-331    UGGGAUGCC
X66325.1/2369-2523  UGGGUGUCA
Y11511.1/115-268    UGAGUGUCU
D16558.1/2710-2862  GGAGUGUCU
#=GC SS_cons        .........
//
# STOCKHOLM 1.0

#=GF AC  RF00061:0
#=GF ID  IRES_HCV:0

AY188094.1/3-196  .........GAG.U....................................G.UCGU
AF041280.1/1-191  ........................................................
Z84228.1/1-250    ............UUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGU
AY188114.1/3-196  .........GAG.U....................................G.UCGU
Z84216.1/1-250    ............UUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCAU
AY446063.1/1-272  ...................AGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGU
AY145945.1/1-206  .....CA............GGA........................C.........
L27900.1/1-231    ....................................................UCGU
L29581.1/2-237    AUGGC..GUUAG.U....................AU..G...AGU.....G.UCGA
AY145980.1/1-251  ...................GGAAAGCGCCUAGCCAUGGCGUUAGUACGAGUGUCGU
#=GC SS_cons      .......<.<<<..<<<<<<...<<<<<<.......>>>>>>....>>>>>>....

AY188094.1/3-196  GCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGA
AF041280.1/1-191  ............CCUCCC....G.G.GAGAGCCAUAGUGGUCUGCGGAACCGGUGA
Z84228.1/1-250    GCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGA
AY188114.1/3-196  GCAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGA
Z84216.1/1-250    GCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAAUCGGUGA
AY446063.1/1-272  GCAGCCUCCAGGAUCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGA
AY145945.1/1-206  ............UCCCCC.U.CCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGA
L27900.1/1-231    GCAGCCUCCAGGACCCUCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGA
L29581.1/2-237    ACAGCCUCCAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGA
AY145980.1/1-251  GCAGCCUCCAGGACUCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGA
#=GC SS_cons      .....>>>>.........<<<<<<<<<<<.<<<<<<<<<<<<<<<<<..<<<<<<.

AY188094.1/3-196  GUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAGCAACCCGCUCAAUAC
AF041280.1/1-191  GUACACCGGAAUCGCUGGGAUGACCGGGUCCUUUCUUGGGACAACCCGCUCAAUAC
Z84228.1/1-250    GUACACCGGAAUUGCCAGGACGACCGGGUUCUUUCUUGGAUUAACCCGCUCAAUGC
AY188114.1/3-196  GUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGACCAACCCGCUCAAUAC
Z84216.1/1-250    GUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGC
AY446063.1/1-272  GUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUAAACCCGCUCAAUGC
AY145945.1/1-206  GUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAGCAACCCGCUCAAUAC
L27900.1/1-231    GUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGC
L29581.1/2-237    GUACACCGGAAUUGCCGGGAUGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGC
AY145980.1/1-251  GUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAGCAACCCGCUCAAUAC
#=GC SS_cons      ...>>>>>><<<<.<<<<<..<<.<<<<<..............>>>>>.>>....>

AY188094.1/3-196  CCAGAAAUUUGGGCGUGCCCCCGCGAAAUCACUAGCCGAGUAGUGUUGGGUCGCGA
AF041280.1/1-191  CCAGAAAUUUGGGCGUGCCCCCGCGAGACCACUAGCCGAGUAGUGUUGGGUCGCGA
Z84228.1/1-250    CUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGA
AY188114.1/3-196  CCAGAAAUUUGGGCGUGCCCCCGCAAGAUCACUAUCCGAGUAAUGUUGGGUCGCGA
Z84216.1/1-250    CUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGA
AY446063.1/1-272  CUGGAGAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUUGGGUCGCGA
AY145945.1/1-206  CCAGAAAUUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUGGGUCGCGA
L27900.1/1-231    CUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGA
L29581.1/2-237    CCGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGA
AY145980.1/1-251  CCAGAAAUUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUGGGUCGCGA
#=GC SS_cons      >>>>.>>>>.<<<....>>>>>>>.>>>>>>>>><<<<..<.<<<......>>>.>

AY188094.1/3-196  AAGGCCUUGUGGUACU................................G.......
AF041280.1/1-191  AAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGGGAGUGCC...............
Z84228.1/1-250    AAGGCCUUGUGGUACUGCCUGAUAGGGU..........G.CUCGAGAGU.......
AY188114.1/3-196  AAGGCCUUGUGGUACU................................G.......
Z84216.1/1-250    AAGGCCUUGUGGUACUGCCUGAUAGGGU..........G.CUCGAGAGU.......
AY446063.1/1-272  AAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUA
AY145945.1/1-206  AAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGG..........
L27900.1/1-231    AAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUA
L29581.1/2-237    AAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGG...G.......
AY145980.1/1-251  AAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGG...G.......
#=GC SS_cons      .>>>>....>>>>.>><<<......>>><<........>>>>>>>>>>>.......

AY188094.1/3-196  ............
AF041280.1/1-191  ............
Z84228.1/1-250    ............
AY188114.1/3-196  ............
Z84216.1/1-250    ............
AY446063.1/1-272  GACCGUG.CACC
AY145945.1/1-206  ............
L27900.1/1-231    G......AC...
L29581.1/2-237    ............
AY145980.1/1-251  ............
#=GC SS_cons      <.......>...
//
# STOCKHOLM 1.0

#=GF AC  RF00061:1
#=GF ID  IRES_HCV:1

AF046866.1/1-389  ACCUGCCUCUUACGAGGCGACACUCCACCAUGGAUCACUCCCCUGUGAGGAACUUC
D31726.1/1-254    ........................................................
M84834.1/1-321    ........................................................
L34381.1/1-279    ........................................................
AY070180.1/1-277  ........................................................
Z84223.1/1-250    ........................................................
U45462.1/1-333    ........................................................
D13448.1/1-296    ...................................CACUCCCCUGUGAGGAACUUC
U05027.1/1-361    .............................AUGAAUCACUCCCCUGUGAGGAACUAC
D14307.1/1-327    ........................................................
#=GC SS_cons      ....<<<<<....>>>>>.......................<<<<.<<<<......

AF046866.1/1-389  UGUCUUCACGCGGAAAGCGCCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUC
D31726.1/1-254    ....UUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUACAGCCUC
M84834.1/1-321    .GUCUUCACGCGGAAAGCGCCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUC
L34381.1/1-279    .GUCUUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUC
AY070180.1/1-277  .................................................CAG...G
Z84223.1/1-250    ....UUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCAUGCAGCCUC
U45462.1/1-333    UGUCUUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUC
D13448.1/1-296    UGUCUUCACGCGGAAAGCGCCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUC
U05027.1/1-361    UGUCUUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUC
D14307.1/1-327    ......CACGCGGAAAGCGCCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUC
#=GC SS_cons      ......<<<<<<...<<<<<<.......>>>>>>....>>>>>>........>>>>

AF046866.1/1-389  CAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCG
D31726.1/1-254    CAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCG
M84834.1/1-321    CAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCG
L34381.1/1-279    CAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCG
AY070180.1/1-277  ....ACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCG
Z84223.1/1-250    CAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCG
U45462.1/1-333    CAGGACCCCCCCUCCCGGGAGAGCCAUAGUAGUCUGCGGAACCGGUGAGUACACCG
D13448.1/1-296    CAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCG
U05027.1/1-361    CAGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCG
D14307.1/1-327    CAGGCCCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCG
#=GC SS_cons      >>>>......<<<<<<<<<<<.<<<<<<<<<<<<<<<<<..<<<<<<....>>>>>

AF046866.1/1-389  GAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAAC.AACCCGCUCAAUACCCAGAAA
D31726.1/1-254    GAAUCGCCGGGAUGACCGGGUCCUUUCUUGGAUU.AACCCGCUCAAUGCCCGGAAA
M84834.1/1-321    GAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAGC.AACCCGCUCAAUACCCAGAAA
L34381.1/1-279    GAAUUGCCAGGACGACCGGGUCCUUUCGUGGAUA.AACCCGCUCAAUGCCUGGAGA
AY070180.1/1-277  GAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAGC.AACCCGCUCAAUACCCAGAAA
Z84223.1/1-250    GAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUU.AACCCGCUCAAUGCCUGGAGA
U45462.1/1-333    GAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUC.AACCCGCUCAAUGCCUGGAGA
D13448.1/1-296    GAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAGC.AACCCGCUCAAUACCCAGAAA
U05027.1/1-361    GAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUCAAACCCGCUCAAUGCCUGGAGA
D14307.1/1-327    GAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAAC.AACCCGCUCAAUACCCAGAAA
#=GC SS_cons      ><<<<.<<<<<..<<.<<<<<...............>>>>>.>>....>>>>>.>>

AF046866.1/1-389  UUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCU
D31726.1/1-254    UUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCU
M84834.1/1-321    UUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCU
L34381.1/1-279    UUUGGGCGUGCCCCCGCAAGACCGCUAGCCAAGUAGUGUUGGGUCGCGAAAGGCCU
AY070180.1/1-277  UUUGGGCGUGCCCCCGCAAGAUCACUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCU
Z84223.1/1-250    UUUGGGCGUGCCCCCGCGAGACUGCUAGUCGAGUAGUGUUGGGUCGCGAAAGGCCU
U45462.1/1-333    UUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCU
D13448.1/1-296    UUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCU
U05027.1/1-361    UUUGGGCGUGCCCCCGCGAGACCGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCU
D14307.1/1-327    UUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCU
#=GC SS_cons      >>.<<<....>>>>>>>.>>>>>>>>><<<<..<.<<<......>>>.>.>>>>..

AF046866.1/1-389  UGUGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAGACCGUG
D31726.1/1-254    UGUGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCC.....................
M84834.1/1-321    UGUGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAGACCGUG
L34381.1/1-279    UGUGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAG......
AY070180.1/1-277  UGUGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAGACCGUG
Z84223.1/1-250    UGUGGUACUGCCUGAUAGGGU..........G.CUCGAGAGU..............
U45462.1/1-333    UGUGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAGACCGUG
D13448.1/1-296    UGUGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAG......
U05027.1/1-361    UGUGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAGACCGUG
D14307.1/1-327    UGUGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAGACCGUG
#=GC SS_cons      ..>>>>.>><<<......>>><<........>>>>>>>>>>>.......<<.<<<<

AF046866.1/1-389  CAACAUGAGCACACUUCCUAAACCACAAAGAAAAACCAAAAGAAACACCAUCCG
D31726.1/1-254    ......................................................
M84834.1/1-321    CAACAUGAGCACACUUCCCAAACCUCAAAGAAAAACCAAAAGA...........
L34381.1/1-279    .ACCGUG.........C.....................................
AY070180.1/1-277  CAACAUGAGCACACUUCCUAAACCUCAAAGAAAAACCAAAAGAAACACCAUCCG
Z84223.1/1-250    ......................................................
U45462.1/1-333    CACCAUGAGCACGAAUCCUAAACCUCAAAGAAAAACCAAACGUAACACCAACCG
D13448.1/1-296    .......A........C.....................................
U05027.1/1-361    CACCAUGAGCACGAAUCCUAAACCUCAAAGAAAAACCAAACGUAACACCAACCG
D14307.1/1-327    CAACAUGAGCACACUUCCUAAACCUCAAAGAAAAACCAAAAGAAACACCAUCCG
#=GC SS_cons      <.......>>>>>..>>.....................................
//
# STOCKHOLM 1.0

#=GF AC  RF00061:2
#=GF ID  IRES_HCV:2

Z84240.1/1-250    ........................................................
L34393.1/1-279    ........................................................
Z84248.1/1-250    ........................................................
U23750.1/1-297    ..........................................UAUGAG........
D63822.1/1-388    GCCAGCCCCUUACGGGGCGACACUCCACCAUGAUCACUCCCCUGUGAGGAACUACU
AJ438621.1/1-250  ........................................................
D63857.1/2-298    ..........................................UAUGAG........
M84851.1/1-320    ........................................................
AF041278.1/1-191  ........................................................
AF056006.1/1-237  ........................................................
#=GC SS_cons      ....<<<<<....>>>>>......................<<<<.<<<<.......

Z84240.1/1-250    ...UUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCC
L34393.1/1-279    GUCUUCACGCGGAAAGCGCCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCC
Z84248.1/1-250    ...UUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCC
U23750.1/1-297    ....U....................................G.UCGUACAGCCUCC
D63822.1/1-388    GUCUUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCC
AJ438621.1/1-250  .....CACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCC
D63857.1/2-298    ....U....................................G.UCGUGCAGCCUCC
M84851.1/1-320    GUCUUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCC
AF041278.1/1-191  ........................................................
AF056006.1/1-237  .....AA.......AGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCC
#=GC SS_cons      .....<<<<<<...<<<<<<.......>>>>>>....>>>>>>........>>>>>

Z84240.1/1-250    AGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGG
L34393.1/1-279    AGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGG
Z84248.1/1-250    AGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGG
U23750.1/1-297    AGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGG
D63822.1/1-388    AGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGG
AJ438621.1/1-250  AGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGG
D63857.1/2-298    AGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUCCGGAACCGGUGAGUACACCGG
M84851.1/1-320    AGGACCCCCCCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGG
AF041278.1/1-191  ...CCUCCC....G.G.GAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGG
AF056006.1/1-237  AGGACCCCCCCUCCCGCGAGAGC.AUAGUGGUCUGCGGAACCGGUGAGUACACCGG
#=GC SS_cons      >>>......<<<<<<<<<<<.<<<<<<<<<<<<<<<<<..<<<<<<....>>>>>>

Z84240.1/1-250    AAUUGCCAGGACGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUU
L34393.1/1-279    AAUCGCUGGGGUGACCGGGUCCUUUCUUGGAACAACCCGCUCAAUACCCAGCAAUU
Z84248.1/1-250    AAUUGCCAGGACGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUU
U23750.1/1-297    AAUUGCCAGGACGACAGGGUCCUUUCUUGGAUCAACCCUCUCAAUGCCUGGAGAUU
D63822.1/1-388    AAUUGCCAGGACGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUU
AJ438621.1/1-250  AAUUGCCAGGACGACCGGGUCCUUUNUUGGAUAAACCCGNUCAAUGCCUGGAGAUU
D63857.1/2-298    AAUUGCCAGGACGACCGGGUCCUUUCUUGGAUUAACCCGCUCAAUGCCUGGAGAUU
M84851.1/1-320    AAUUGCCAGGACGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUU
AF041278.1/1-191  AAUUGCCAGGACGACCGGGUCCUUUCUUGGAUCAACCCGCUCAAUGCCUGGAGAUU
AF056006.1/1-237  AAUUGCCAGGACGACCGGGUCCUUUCUGGGAUCAACCCGCUCAAUGCCUGGAGAUU
#=GC SS_cons      <<<<.<<<<<..<<.<<<<<..............>>>>>.>>....>>>>>.>>>>

Z84240.1/1-250    UGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUG
L34393.1/1-279    UGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUG
Z84248.1/1-250    UGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUG
U23750.1/1-297    UGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUG
D63822.1/1-388    UGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUG
AJ438621.1/1-250  UGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGNGUUGGGUCGCGAAAGGCCUUG
D63857.1/2-298    UGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUG
M84851.1/1-320    UGGGCGUGCCCCCGUAAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUG
AF041278.1/1-191  UGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUUGGGUCGCGAAAGGCCUUG
AF056006.1/1-237  UGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUGGUAUUGGGUCGCGAAAGGCCUUG
#=GC SS_cons      .<<<....>>>>>>>.>>>>>>>>><<<<..<.<<<......>>>.>.>>>>....

Z84240.1/1-250    UGGUACUGCCUGAUAGGGCG..........CUUCGG.AGU................
L34393.1/1-279    UGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAG.......A
Z84248.1/1-250    UGGUACUGCUUGAUAGGGU..........G.CUCGAGAGU................
U23750.1/1-297    UGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAGACCGUGCA
D63822.1/1-388    UGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAGACCGUGCA
AJ438621.1/1-250  UGGUACUGCCUGAUAGGGU..........G.CUCGAGAGU................
D63857.1/2-298    UGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAGACCGUGCA
M84851.1/1-320    UGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAGACCGUGCA
AF041278.1/1-191  UGGUACUGCCUGAUAGGGUGUUGGGGAGUGCC........................
AF056006.1/1-237  UGGUACUGCCUGAUAGGGUGCUU......GC........G................
#=GC SS_cons      >>>>.>><<<......>>><<........>>>>>>>>>>>.......<<.<<<<<.

Z84240.1/1-250    ....................................................
L34393.1/1-279    CCGUG.........C.....................................
Z84248.1/1-250    ....................................................
U23750.1/1-297    ACAUGAGCACACUUCCUAAACCCCAAAGAAAAACCAAAAGAAACACCAACCG
D63822.1/1-388    UCAUGAGCACAAAUCCAAAACCCCAAAGACAAACCAAAAGAAACACCAACCG
AJ438621.1/1-250  ....GA..............................................
D63857.1/2-298    CCAUGAGCACGAAUCCUAAACCUCAAAGAAAAACCAAACGUAACACCUACCG
M84851.1/1-320    CCAUGAGCACGAAUCCUAAACCUCAAAGAAAAACCAAA............CG
AF041278.1/1-191  ....................................................
AF056006.1/1-237  ....................................................
#=GC SS_cons      ......>>>>>..>>.....................................
//
# STOCKHOLM 1.0

#=GF AC  RF00061:3
#=GF ID  IRES_HCV:3

AY188170.1/2-196  ....UGAG............U...................................
AF057153.1/1-237  .....................AA.......AGCGCCUAGCCAUGGCGUUAGUAUGA
AY190387.1/1-182  ....................U.G.C............AGCCUU.............
AY344028.1/1-165  ........................................................
Z23075.1/1-230    ...................UUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGA
AY190441.1/4-181  AUG...............CUU...................................
AY145993.1/1-216  ...GUG.C.............................AGCC.U.............
AY188160.1/2-196  ....UGAG............U...................................
Z84275.1/1-250    ...................UUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUACGA
U14774.1/1-239    .....GAGGAACUACUGUCUUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGA
#=GC SS_cons      ...<.<<<<............<<<<<<...<<<<<<.......>>>>>>....>>>

AY188170.1/2-196  .G.UCGUACAGCCUCCAGGCCCCCCCCUCCCGGGAGAGCC.AUAGUGGUCUGCGGA
AF057153.1/1-237  GUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGCGAGAGCCUAUAG..GCCUGCGGA
AY190387.1/1-182  ........CAG...G....CCCCCCCCUCCCGGGAGAGCC.AUAGUAGUCUGCGGA
AY344028.1/1-165  ......................CCC....G.G.GAGAGCC.AUAGUGGUCUGCGGA
Z23075.1/1-230    GUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCC.AUAGUGGUCUGCGGA
AY190441.1/4-181  ........CAG...G....ACCCCCCCUCCCGGGAGAGCC.AUAGUGGUCUGCGGA
AY145993.1/1-216  ..............CCAGGACCCCCCCUCCCGGGAGAGCC.AUAGUGGUCUGCGGA
AY188160.1/2-196  .G.UCGUACAGCCUCCAGGACCCCCCCUCCCGGGAGAGCC.AUAGUGGUCUGCGGA
Z84275.1/1-250    GUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCC.AUAGUGGUCUGCGGA
U14774.1/1-239    GUGUCGUGCAGCCUCCAGGACCCCCCCUCCCGGGAGAGCC.AUAGUGGUCUGCGGA
#=GC SS_cons      >>>........>>>>>.........<<<<<<<<<<<.<<<.<<<<<<<<<<<<<<.

AY188170.1/2-196  ACCGGUGAGUACACCGGAAUUGCCGGAAAGACUGGGUCCUUUCUUGGAUA.AACCC
AF057153.1/1-237  ACGGGUGAGUACACCGGAAUCGCUGGGAUGACCGGGUCCUUUCUUGGAGC.AACCC
AY190387.1/1-182  ACCGGUGAGUACACCGGAAUCGCCGGGAUGACCGGGUCCUUUCUUGGAAUCAACCC
AY344028.1/1-165  ACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAAC.AACCC
Z23075.1/1-230    ACCGGUGAGUUCACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUC.AACCC
AY190441.1/4-181  ACCGGUGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUC.AACCC
AY145993.1/1-216  ACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAAC.AACCC
AY188160.1/2-196  ACCGGUGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUA.AACCC
Z84275.1/1-250    ACCGGUGAGUACACCGGAAUCGCUGGGGUGACCGGGUCCUUUCUUGGAAC.AACCC
U14774.1/1-239    ACCGGUGAGUACACCGGAAUUGCCAGGACGACCGGGUCCUUUCUUGGAUU.AACCC
#=GC SS_cons      .<<<<<<....>>>>>><<<<.<<<<<..<<.<<<<<...............>>>>

AY188170.1/2-196  ACUCUAUGUCCGGUCAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCUAGUAGCGUU
AF057153.1/1-237  GCUCAAUGACUCCAGAAUUGGGCGUGCCCCCGCAGGAUCACUAGCCGAGUGGUGUU
AY190387.1/1-182  GCUCAAUGCCCGGAAAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUU
AY344028.1/1-165  GCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUU
Z23075.1/1-230    GCUCAAUGCCUGGAGAUUUAGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUU
AY190441.1/4-181  GCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCGAGACUGCUAGCCGAGUAGUGUU
AY145993.1/1-216  GCUCAAUACCCAGAAAUUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUU
AY188160.1/2-196  GCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUU
Z84275.1/1-250    GCUCAAUACCCAAAGAUUUGGGCGUGCCCCCGCGAGAUCACUAGCCGAGUAGUGUU
U14774.1/1-239    GCUCAAUGCCUGGAGAUUUGGGCGUGCCCCCGCAAGACUGCUAGCCGAGUAGUGUU
#=GC SS_cons      >.>>....>>>>>.>>>>.<<<....>>>>>>>.>>>>>>>>><<<<..<.<<<..

AY188170.1/2-196  GGGUUGCGAACGGCCUUGUGGUACU...............................
AF057153.1/1-237  GGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUU......GC.......
AY190387.1/1-182  GGGUCGCGAAAGGC.........CU.....................U.......GU
AY344028.1/1-165  GGGUCGCGAAAGGCCUUGUGGUACU........G...............C......
Z23075.1/1-230    GGGUCGCGAAAGGCCUUGUGGUACU........G...............C......
AY190441.1/4-181  GGGUCGCGAAAGGC.........CU.....................U.......GU
AY145993.1/1-216  GGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGUGCUUGCGAGUGCCCCGG..
AY188160.1/2-196  GGGUCGCGAAAGGCCUUGUGGUACU...............................
Z84275.1/1-250    GGGUCGCGAAAGGCCUUGUGGUACUGCCUGAUAGGGU..........G.CUCGAGA
U14774.1/1-239    GGGUCGCGAAAGGC.........CU.....................U.......GU
#=GC SS_cons      ....>>>.>.>>>>....>>>>.>><<<......>>><<........>>>>>>>>>

AY188170.1/2-196  .G.
AF057153.1/1-237  .G.
AY190387.1/1-182  GG.
AY344028.1/1-165  ...
Z23075.1/1-230    ...
AY190441.1/4-181  GG.
AY145993.1/1-216  .G.
AY188160.1/2-196  .G.
Z84275.1/1-250    GU.
U14774.1/1-239    GGU
#=GC SS_cons      >>.
//
# STOCKHOLM 1.0

#=GF AC  RF00061:4
#=GF ID  IRES_HCV:4

AF207771.1/1-379  UUGGGGGCGACACUCCACCAUAGAUCACUCCCCUGUGAGGAACUACUGUCUUCACG
Z36523.1/3-205    AU...GGC..........................GUUAG.............UACG
U05022.1/1-360    ...................AUGGAUCACUCCCCUGUGAGGAACUUCUGUCUUCACG
M84828.1/1-321    ...............................................GUCUUCACG
AJ006323.1/1-251  ........................................................
U14772.1/1-239    ....................................GAGGAACUACUGUCUUCACG
U23390.1/1-319    ........................................................
AF506669.1/3-246  ..................................GUUAG.............UACG
L34364.1/1-279    ...............................................GUCUUCACG
AY163830.1/1-251  ..................................................UUCACG
#=GC SS_cons      ...............................<<<<.<<<<............<<<<

AF207771.1/1-379  CAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGUCCCCC
Z36523.1/3-205    ..............................AGUGUCGUGCAGCCUCCAGGCCCCCC
U05022.1/1-360    CGGAAAGCGCCUAGCCAUGGCGUUAGUACGAGUGUCGUGCAGCCUCCAGGACCCCC
M84828.1/1-321    CAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUUGUACAGCCUCCAGGGCCCCC
AJ006323.1/1-251  .GGAAAGCGCCUAGCCAUGGCGUUAGUACGAGUGUNGUGCAGCCUCCAGGCCCCCC
U14772.1/1-239    CAGAAGGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCC
U23390.1/1-319    ....AAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGGACCCCC
AF506669.1/3-246  ..............................AGUGUCGUGCAGCCUCCAGGACCCCC
L34364.1/1-279    CAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUACAGCCUCCAGGCCCCCC
AY163830.1/1-251  CAGAAACCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGGGCAGCCUCCAGGACCCCC
#=GC SS_cons      <<...<<<<<<.......>>>>>>....>>>>>>........>>>>>>>>......

AF207771.1/1-379  CCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUG.CCA
Z36523.1/3-205    CCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCG.CCG
U05022.1/1-360    CCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCG.CUG
M84828.1/1-321    CCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCG.CCG
AJ006323.1/1-251  CCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCG.CUG
U14772.1/1-239    CCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUG.CCA
U23390.1/1-319    CCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUG.CCA
AF506669.1/3-246  CCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUCG.CUG
L34364.1/1-279    CCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUA.CCG
AY163830.1/1-251  CCUCCCGGGAGAGCCAUAGUGGUCUGCGGAACCGGUGAGUACACCGGAAUUGUCAA
#=GC SS_cons      <<<<<<<<<<<.<<<<<<<<<<<<<<<<<..<<<<<<....>>>>>><<<<..<<<

AF207771.1/1-379  GGACGACCGGGUCCUUUCUUGGAUU.AACCCGCUCAAUGCCUGGAGAUUUGGGCGU
Z36523.1/3-205    GGAUGACAGGGUCCUUUCUUGGAAC.AACCCUCUCAAUGCCCGGAAAUUUGGGCGU
U05022.1/1-360    GGGUGACCGGGUCCUUUCUUGGAAC.AACCCGCUCAAUACCCGGAAAUUUGGGCGU
M84828.1/1-321    GGAUGACCGGGUCCUUUCUUGGAUUAAACCCGCUCAAUGCCCGGAAAUUUGGGCGU
AJ006323.1/1-251  GGGUGACCGGGUCCUUUCUUGGAGC.AACCCGCUCAAUACCCAGAAAUUUGGGCGU
U14772.1/1-239    GGACGACCGGGUCCUUUCUUGGAUC.AACCCGCUCAAUGCCUGGAGAUUUGGGCGU
U23390.1/1-319    GGAUGACCGGGUCCUUUCUUGGAUU.AACCCGCUCAAUGCCUGGAGAUUUGGGCGU
AF506669.1/3-246  GGGUGACCGGGUCCUUUCUUGGAAC.AACCCGCUCAAUACCCAGAAAUUUGGGCGU
L34364.1/1-279    GAAAGACUGGGUCCUUUCUUGGACA.AACCCACUCUAUGUCCGGUCAUUUGGGCGU
AY163830.1/1-251  AGUCGACCGAAUCCUUUGUUUUAUC.AAACCCCUCGAUGCCUGGAGAUUUGGGCGU
#=GC SS_cons      <<..<<.<<<<<...............>>>>>.>>....>>>>>.>>>>.<<<...

AF207771.1/1-379  GCCCCCGCGAG.ACUGCUAGCCGAGUAGUGUUGGGUCGCG.AAAGGCCUUGUGGUA
Z36523.1/3-205    GCCCCCGCGAG.AUCACUAGCCGAGUAGUGUUGGGUCGCG.AAAGGC.........
U05022.1/1-360    GCCCCCGCGAG.AUCACUAGCCGAGUAGUGUUGGGUCGCG.AAAGGCCUUGUGGUA
M84828.1/1-321    GCCCCCGCGAG.ACUGCUAGCCGAGUAGUGUUGGGUCGCG.AAAGGCCUUGUGGUA
AJ006323.1/1-251  GCCCCCGCAAG.AUCACUAGCCGAGUAGUGUUGGGUCGCG.AAAGGCCUUGUGGUA
U14772.1/1-239    GCCCCCGCGAG.ACUGCUAGCCGAGUAGUGUUGGGUCGCG.AAAGGC.........
U23390.1/1-319    GCCCCCGCGAG.ACUGCUAGCCGAGUAGUGUUGGGUCGCG.AAAGGCCUUGUGGUA
AF506669.1/3-246  GCCCCCGCAAG.AUCACUAGCCGAGUAGUGUUGGGUCGCG.AAAGGCCUUGUGGUA
L34364.1/1-279    GCCCCCGCAAG.ACUGCUAGCCUAGUAGCGUUGGGUUGCG.AACGGCCUUGUGGUA
AY163830.1/1-251  GCCCCCGCGAGCACUGUUAGCCGAGUAAUGUUGGGUCCCGUAAAGGCCUUGAGGUA
#=GC SS_cons      .>>>>>>>.>>.>>>>>>><<<<..<.<<<......>>>..>.>>>>....>>>>.

AF207771.1/1-379  CUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAGACCGUGCAUCAUG
Z36523.1/3-205    CU.....................U.......GUGGU....................
U05022.1/1-360    CUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAGACCGUGCAACAUG
M84828.1/1-321    CUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAGACCGUGCAUCAUG
AJ006323.1/1-251  CUGCCUGAUAGGGUGCUUGCGAGUGCCCCGG...G.....................
U14772.1/1-239    CU.....................U.......GUGGU....................
U23390.1/1-319    CUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAGACCGUGCACCAUG
AF506669.1/3-246  CUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAG.............
L34364.1/1-279    CUGCCUGAUAGGGUGCUUGCGAGUGCCCCGGGAGGUCUCGUAG.......ACCGUG
AY163830.1/1-251  CUGCCUGAUAGGGU..........G.CUCG..AGA.....................
#=GC SS_cons      >><<<......>>><<........>>>>>>>>>>>.......<<.<<<<<......

AF207771.1/1-379  AGCACAAAUCCUAAACCUCAAAGAAAAACCAAACGUAACACCAACCG
Z36523.1/3-205    ...............................................
U05022.1/1-360    AGCACACUUCCUAAACCCCAAAGAAAAACCAAAAGAAACACCAUCCG
M84828.1/1-321    AGCACGAAUCCUAAACCUCAAAGAAAAACCAAA............CG
AJ006323.1/1-251  ...............................................
U14772.1/1-239    ...............................................
U23390.1/1-319    AGCACGAAUCCUAAACCUCAAAGAAAAACCAAACGUAACACCAACCG
AF506669.1/3-246  A........C.....................................
L34364.1/1-279    .........C.....................................
AY163830.1/1-251  ...............................................
#=GC SS_cons      .>>>>>..>>.....................................
//
# STOCKHOLM 1.0

#=GF AC  RF00168:0
#=GF ID  Lysine:0

AE017007.1/287994-288186  CGAUGAGGUAGAGGUUGCGACUUUU.AAGA..GUA..CGACGGAC...
AP001512.1/119931-120105  GGAUGAGGUAGAGGU.GCAAUGCGA.AUCA..GUA..CCCACUUGG..
AL596166.1/112469-112272  UGGUGAGGUAGAGGUUGCGAGAUGC.ACUA..GUA..AUUUUUUCGAG
AE016747.1/182196-182375  AGAUUUUGAUGAGGC.GCAUCAAUC.AUGA..GUA..AACUUUAGAUA
AF270308.1/2156-2331      AAUAGAGUUAGAGGUUGCAUUAUUA.AUGA..CUA..ACUUAUCAGAA
AE007576.1/1562-1747      ACCUUUUGUAGAGGU.GCUUUAAGUCAAGA..GUA..ACCGUUUGG..
AE006448.1/6071-6253      CACAUCGAUAGAGGUCGCAACUGAU.AUGAAUCUACGCCGAGUUGG..
AE015829.1/4454-4280      AGGAACAGAAGAGGA.GCGUUAACU.A..G..GUA..GUCAAUCAGAG
AE006126.1/222-48         UACUUGUGUAGAGGA.GCGAUCACU.AUAA..GUA..UUUUUUCU...
AE001799.1/20444-20268    .GACCCGACGGAGGC.GCGCCCGAG.AUGA..GUA..GGCUGUCCC..
#=GC SS_cons              .....<<<<<<.....<<<<<<<<<............<<<<<<<<...

AE017007.1/287994-288186  .....GAGACACAGAGAAUGUCACCGACUCCGUUUGAAAGG.AAAAGU
AP001512.1/119931-120105  .....AGUUUGAUGGAACUAGG....AAGAGUGGGGAAAGG.UCAAUU
AL596166.1/112469-112272  GCGAAACAAAGACGCCAAUG......ACAAAAAACGAACAG.GUUAAU
AE016747.1/182196-182375  AUU..UGUCUGCUAACAAUU.......AUAGAGUUAAAAGG.GUGAGA
AF270308.1/2156-2331      GUCGUAUGGGACAUGUGUUG......A..AUAAGUGAAAGG.UAAUAA
AE007576.1/1562-1747      .....AGUUGGCAAACUUAG......AUGAACGGUAAAAGGGGCUUUU
AE006448.1/6071-6253      .....AGCACAACAAAGACG......CGUAUUUAGAGGAGG.AGAGGU
AE015829.1/4454-4280      GA...GCACAAACUCCAGCG......AUGAUUGAUGAGGGA.GAUUAG
AE006126.1/222-48         .....GAGUGGAUAACGAAG......AGGAAAAAGGAAAGG.AGUGAC
AE001799.1/20444-20268    .....AUCAGGGGAGGAAUCG.....GGGACGGCUGAAAGG.CGAGGG
#=GC SS_cons              ...........................>>>>>>>>.......>>>>>>

AE017007.1/287994-288186  UGCCGAAGUUUAUAUUUCUU.CUCU.G....GAAAUAUGAGCUGGGGC
AP001512.1/119931-120105  UGCCGAAGUGAAUGUAUGUCCAUCC......CAUACGUUUGCUGGGUC
AL596166.1/112469-112272  CGCCGAAGUGACUAUUUUUU.CUUU.GUAUCGAAAUAGUUGUUGGGAC
AE016747.1/182196-182375  UGCCGAAAUGAUUCAUAAU..AGCA.G....UUAUGAAUCGUUGGACU
AF270308.1/2156-2331      UGCCGAAAUGAUGUUAUUUC.CAUA.A....AUUAGCAUUGUUGGGAC
AE007576.1/1562-1747      AGCCGAAGCAUUUAGAUU...GGCA......GAUUUAUUUGCUGGCUU
AE006448.1/6071-6253      UGCCGAAAGAAUUUUGUU...GCUC......AGCAAGGUUCUUGGGCU
AE015829.1/4454-4280      CGCCGAGGCAUAGAUGUGGU.UGCU.G....CAUGUUUAUGUCGGUCG
AE006126.1/222-48         CGCCGAAAUCAAUUGAAA...GUCA......UUUUGAUUGGUUGGUGG
AE001799.1/20444-20268    CGCCGAAGG.GUGCAGAGUUCCUCCCG....CUCUGCAUGCCUGGGGG
#=GC SS_cons              >>>...<<<<<<<<<<<<.............>>>>>>>>>>>><<<<<

AE017007.1/287994-288186  UG.UCUCC.GAAA.GGAACAGAACUGUCACGUUU.ACAAAAUUACCGU
AP001512.1/119931-120105  GU.UUUU..GAAUAAAAAACGAACUGCCGCUGAC.UGU..........
AL596166.1/112469-112272  AG.UUUCC.UAAA.GGAGCUGGACUGCUAUAAGAAUUUGUCGAAAU..
AE016747.1/182196-182375  UAAUGGU..UAAGAGCUAUAAGUUUGUCAUUAUU.AUU..........
AF270308.1/2156-2331      AA.CUUUC.GAAUAGAAGUUGUACUGUCACU....UUA..........
AE007576.1/1562-1747      UU.CAUA..CAACAUAUGAAUGGCUGUCACUUUA.UUAGUUAGUUAUU
AE006448.1/6071-6253      AG.UGAG..AAAAACUCACUAGACUGUCGCAAAUGGUUAAUA......
AE015829.1/4454-4280      CU.UAGGCUGAAU.CCU.AACGAUUGUCACCUG..UAA..........
AE006126.1/222-48         CG.UAUUC.GAAA.GGAACGUCAUUGUCAUAGUC.UUUUUU.......
AE001799.1/20444-20268    UA.UGGG..GAAUACCCAUACCACUGUCACGGAGGUCU..........
#=GC SS_cons              <<.<<<<.......>>>>>>>>>>>.<<<<<<<...............

AE017007.1/287994-288186  GUAAACGUGG.GGUGCUAUCUUAACG
AP001512.1/119931-120105  ...U.AGCGG.AGAGCUAUCUGCCAA
AL596166.1/112469-112272  .UUCUUAUAGGUGUGCUAUCUGACAA
AE016747.1/182196-182375  .AAAUAAUGG.AGUGCAUCACUUGUA
AF270308.1/2156-2331      .....UGUGA.UGUGCUACCUUAUAU
AE007576.1/1562-1747      AGGUAAGUGG.AGCGCUACAAGGUAC
AE006448.1/6071-6253      .ACCAUGCGG.AGGGCUAUUCGUUCA
AE015829.1/4454-4280      ...UUGGUGG.AGAGCUUCUGGUGAC
AE006126.1/222-48         .AAACUAUGG.AGCGCUACUGGUUGG
AE001799.1/20444-20268    ..CUCCGUGG.AGAGCCGAUCGGGUC
#=GC SS_cons              ...>>>>>>>.....>>>>>>.....
//
# STOCKHOLM 1.0

#=GF AC  RF00168:1
#=GF ID  Lysine:1

AE017007.1/287994-288186  CGAUGAGGUAGAGGUUGCGACUUUU.AAGAGUACGACGGAC.......
AP001512.1/119931-120105  GGAUGAGGUAGAGGU.GCAAUGCGA.AUCAGUACCCACUUGG......
AP004598.1/253855-254037  GUUUUGGAUAGAGGU.GCGGAGACC.AUCAGUAUAUACGCGGAAGG..
AP004601.1/22341-22165    CGGUGAGGUAGAGGA.GCAUACAAC.AUUAGUAAUCGACAAG......
AE016747.1/182196-182375  AGAUUUUGAUGAGGC.GCAUCAAUC.AUGAGUAAACUUUAGAUAAUU.
AP004827.1/261938-261763  AAUUGAGUUAGAGGUUGCAUGUUUA.AUUAGUAACUUGUCAGAAGUAU
AE015937.1/285886-286061  UAGAAAGGUAGAGGC.GCGGUAUUU.AAUAGUAUCUGUACA.......
AE013149.1/9167-9356      AGGUGAGGUAGAGGC.GCGGGUCAUCAAGAGUAACAUGCCAGAGG...
AE015545.1/1265-1436      CCUUUAAGUAGAGGC.GCGCUGCCU.AUGACUACUUGUGCGG......
AP005076.1/290738-290918  UGUUGCCGUAGAGGC.GCAGUCUCG.AAGAGUAGCUAUUAUU......
#=GC SS_cons              .....<<<<<<.....<<<<<<<<<........<<<<<<<<.......

AE017007.1/287994-288186  ..GAGACACAGAG.AAUGUCACCGACUCCGUUUGAAAGGAAA.AGUUG
AP001512.1/119931-120105  ..AGUUUGAUGGA.ACUAGG....AAGAGUGGGGAAAGGUCA.AUUUG
AP004598.1/253855-254037  ..GAAAUGAGCCCUAGUG......AAGCGUAUGGAAAGGGGA.AUCUG
AP004601.1/22341-22165    ..AGGAUGACAAC.GAUG......AUAGUUGGUGGAAGGGUU.GUUUG
AE016747.1/182196-182375  ..UGUCUGCUAAC.AAUU.......AUAGAGUUAAAAGGGUG.AGAUG
AP004827.1/261938-261763  UUAUGGUACAUAA.GUUG......A..ACAAGUGAAAGGUAA.AGAUG
AE015937.1/285886-286061  ..GAUAAAAGCAA.GAUG......AUGUACAGUGAAAGGAAA.UAUCG
AE013149.1/9167-9356      ..UGUUAAGGGCC.GAUG......AAGGUGUGUGAAAGGGGU.GCCCG
AE015545.1/1265-1436      ..AGGGUGAUGCC.GCAG......AUGUACAAGGAAAGGAGU.CAGCG
AP005076.1/290738-290918  ..GGGGUGAUGCC.AAUG......AAUAAUAGUGGAAGGCGAAGAUUG
#=GC SS_cons              .........................>>>>>>>>......>>>.>>>>>

AE017007.1/287994-288186  CCGAAGUUUAUAUUUCUU..CUCU.GGAAAUAUGAGCUGGGGCUG.UC
AP001512.1/119931-120105  CCGAAGUGAAUGUAUGUCC.AUCC..CAUACGUUUGCUGGGUCGU.UU
AP004598.1/253855-254037  CCGAAGCGAGUGAAAUA...CUCAUUCAUUAACUCGUUGGUGCUGCUA
AP004601.1/22341-22165    CCGAAGC.AUAAUAAGG...GUCAGACUUAUUAUUGCUGGUACAU.CU
AE016747.1/182196-182375  CCGAAAUGAUUCAUAAU...AGCA.GUUAUGAAUCGUUGGACUUAAUG
AP004827.1/261938-261763  CCGAAAUAGAUAUAAAC...CAUA.AAUUAUAUCUAUUGGGACAG.UU
AE015937.1/285886-286061  CCGAAGC.AUGCAGUUAAAGCUUUGAUACUGUAUGACUGGUCUUA.UU
AE013149.1/9167-9356      CCGAAGC.GCGUAAACUUC.CUUAAGGUUUACGCAGCUGGGCCUA.UG
AE015545.1/1265-1436      CCGAAGUAGCCAGGUC....AUCA..AACCGAGCUGCUGGUUUUG.CA
AP005076.1/290738-290918  CCGAAGUAAGUCGUAU....AUCA..AAACGCCUUGCUGGGGUUG.UA
#=GC SS_cons              >...<<<<<<<<<<<<..........>>>>>>>>>>>><<<<<<<.<<

AE017007.1/287994-288186  UCCGAAA.GGAA.CAGAACUGUCACGUUU..ACAAAAUUACCGUGUAA
AP001512.1/119931-120105  UU.GAAUAAAAA.ACGAACUGCCGCUGAC..UGU.............U
AP004598.1/253855-254037  UU.GAACAAAUAACAGUGCUGUCAUAUAGG.AGA............CU
AP004601.1/22341-22165    UU.GAAUAAAAG.AUGCACUGUCAUGCAAAAUUA...........AGU
AE016747.1/182196-182375  GU.UAAGAGCUA.UAAGUUUGUCAUUAUU..AUU...........AAA
AP004827.1/261938-261763  UUCGAAUAGGAA.CUGUACUGUCACA.....GAA..............
AE015937.1/285886-286061  UA.AAAUAUGAA.UAAGAUUGUCACAAAA..UGA............AU
AE013149.1/9167-9356      CC.GAACAGGUA.UAGGACUGUCACUGAAG.GCUCCCCAGGC...CUU
AE015545.1/1265-1436      UC.AAAUAGGUG.CAAGACUGCCAUAGUC..AUC............CA
AP005076.1/290738-290918  UCUGAAA.GGAA.CAACACUGCCAUAGUA..UAUUUACAUU....AAA
#=GC SS_cons              <<......>>>>.>>>>>>>.<<<<<<<...................>

AE017007.1/287994-288186  ACGUGGGGUGCUAUCUUAACG
AP001512.1/119931-120105  .AGCGGAGAGCUAUCUGCCAA
AP004598.1/253855-254037  AUAUGGAGGGCUAUCGAGCUG
AP004601.1/22341-22165    GCAUGGAGAACUACUGAUCGA
AE016747.1/182196-182375  UAAUGGAGUGCAUCACUUGUA
AP004827.1/261938-261763  .UGUGAUGUGCUACCUUAUAU
AE015937.1/285886-286061  UUGUGGAGAGCUAUCAUUCAA
AE013149.1/9167-9356      CAGUGGAGAGCUAUCUCGCUA
AE015545.1/1265-1436      CUAUGGAGCGCUACCUGAAGG
AP005076.1/290738-290918  CUAUGGAGCGCUACUGUAGGG
#=GC SS_cons              >>>>>>....>>>>>>.....
//
# STOCKHOLM 1.0

#=GF AC  RF00168:2
#=GF ID  Lysine:2

M93419.1/332-511          AGUGAAGAUAGAGGU.GCGAACUUC.AUCAGUAAAAGCUUGGAGAA..
Z99121.2/6040-5861        CAGUGAGGUAGAGGUUGCGCGGAUG.AUGAGUCACACAUGCUA.....
AE017028.1/200117-200298  CUCAAAGGUAGAGGCCGCGAUAGGA.AAGAGUAAGCUAUGGG......
AE017274.1/20257-20449    CGAUGAGGUAGAGGUUGCGACUUUU.AAUAGUAAAACGGAC.......
AL591976.1/186683-186486  UGGUGAGGUAGAGGUUGCGAGAUGC.ACUAGUAAUUUUUUCGAGGCGA
AP003362.3/86114-86289    AUAUUUUGAUGAGGC.GCAUCAAUC.AUGAGUAAAGUUUAGAUUAC..
AP004827.1/261938-261763  AAUUGAGUUAGAGGUUGCAUGUUUA.AUUAGUAACUUGUCAGAAGUAU
AE007843.1/1920-1745      AACUGAGGUAGAGGC.GCAAAAUUU.AAGAGUAGAACUGUG.......
AE016947.1/224792-224618  AAAAGAGGUAGAGGUCGCGGUUUUU.A...UUACGCUUGUGG......
AE010489.1/2647-2468      AUAAAAAAUAGAGGU.GCAUAUAUGUA..GGUAGUGUGAAAAUGUUAA
#=GC SS_cons              .....<<<<<<.....<<<<<<<<<........<<<<<<<<.......

M93419.1/332-511          ..GAAUGAGCUUCAAUG......AAAAGCUUU.GAAAGGGAACGUUCG
Z99121.2/6040-5861        ..GGCUGACAGGGGCUGUUA...AACAUGUGU.AAAAGGCAU.CAGCG
AE017028.1/200117-200298  ..AGAUUUAAUGGAAUCUGUG..AUCAUAGGUUGAAAGGGAC.UAUUG
AE017274.1/20257-20449    ..GAGACACAGAGAAUGUCUUAGACUCCGUUU.GAAAGGAAA.AGUUG
AL591976.1/186683-186486  A.ACAAAGACGCCGACG......ACAAAGAAU.GAACAGGUU.GAUCG
AP003362.3/86114-86289    ..UGUCUGCUAACAG.........CUGAAUUU.GAAAGGGUG.CGAUG
AP004827.1/261938-261763  UUAUGGUACAUAAGUUG......A..ACAAGU.GAAAGGUAA.AGAUG
AE007843.1/1920-1745      ..GAGACAAGCACUAUG......AAGCAGUUU.AAAAGGAAA.UUUUG
AE016947.1/224792-224618  ..AGUGAGAGGACACUGGG....AAGCAAGUU.UA..GGAUC.AAUCG
AE010489.1/2647-2468      GGUAUAAGCCACCAAUG.......UUUCACAU.GAAGGGCAU.AGUUG
#=GC SS_cons              ........................>>>>>>>>.......>>>.>>>>>

M93419.1/332-511          CCGAAGUGAAGAAAAA...CUCAUU....UUUUUCUU.UGCUGGUCCU
Z99121.2/6040-5861        CCGAAGUGUGGAGAAAGCCGAUC......CUUCUCUA.UGCUGGGACU
AE017028.1/200117-200298  CCGAAAUAUAAGAAUAACCAUCU......UAUUCAUA.UAUUGGGACU
AE017274.1/20257-20449    CCGAAGUUUAUAUUUCUU.CUCU.G....GAAAUAUG.AGCUGGGGCU
AL591976.1/186683-186486  CCGAAGUGACUAUUUUCU.CUUU.GUUUAGAAAUAGU.UGUUGGGACA
AP003362.3/86114-86289    CCGAAGCGAUUAUAAU...AGCA......GUUAUAAUUUGUUGGACUU
AP004827.1/261938-261763  CCGAAAUAGAUAUAAAC..CAUA.A....AUUAUAUC.UAUUGGGACA
AE007843.1/1920-1745      CCGAAGCGUAUAGCUAAUGCUUU.A....AUGCUGUACUGCUGGGUUU
AE016947.1/224792-224618  CCGAAAUGCAUAACGGAGCCUCU.U....CUGUUGUG.UGUUGGGACG
AE010489.1/2647-2468      CCGAAAGAAAGUUAAUUG.CUUAUG....AUUAAUUU.UCUUGGU.CA
#=GC SS_cons              >...<<<<<<<<<<<<.............>>>>>>>>.>>>><<<<<<

M93419.1/332-511          G.CAUU.UAAGAGAUGCCGGAUUGUCAAGGCGGUGC............
Z99121.2/6040-5861        G.UAUCUGAAUAAGUGCAGGACUGCCGCGUGC.UUU............
AE017028.1/200117-200298  G.CAUU.GAAUAAAUGUAGUACUGUCAUAAGA.UUU...........A
AE017274.1/20257-20449    G.UCUCCGAAA.GGAACAGAACUGUCACGUUU.ACAAAAUUACCGUGU
AL591976.1/186683-186486  G.UUUCCUAAA.GGGGCUGGACUGCUAUAAGAAUUUGUCGAAAU...U
AP003362.3/86114-86289    UUUGGU.UAAGAGCUGAGAGUUUGUCAUUAUU.UAA...........A
AP004827.1/261938-261763  G.UUUUCGAAUAGGAACUGUACUGUCACA....GAA............
AE007843.1/1920-1745      G.UAUA.AAAUAUGUGCAAAACUGUCACAAAG.UAU............
AE016947.1/224792-224618  U.AAGU.UAAGAGCUUGCGGACUGUCUUAGUAGUGA............
AE010489.1/2647-2468      A.UGU..CAACAAGCAUUG.ACUGUCAUAUUC.UUU...........U
#=GC SS_cons              <.<<<<......>>>>>>>>>>>.<<<<<<<.................

M93419.1/332-511          CGCCUUGG.AGAGCUAUCUCACUG
Z99121.2/6040-5861        .UUCGCGG.AGGGCUAUCCGGAGA
AE017028.1/200117-200298  UUUUAUGG.AGAGCUAUUUGGAGA
AE017274.1/20257-20449    AAACGUGG.GGUGCUAUCUUAACG
AL591976.1/186683-186486  UCUUAUAGGUGUGCUAUCUGACAA
AP003362.3/86114-86289    AAUAAUGG.AGUGCAUCACUUGUA
AP004827.1/261938-261763  ...UGUGA.UGUGCUACCUUAUAU
AE007843.1/1920-1745      AAUUGUGG.AGAACUAUCAUUGGU
AE016947.1/224792-224618  UGCUAAGU.UGUGCUAUGUUUCGU
AE010489.1/2647-2468      GAAUAUGG.AGAGCUAUUUAUAGU
#=GC SS_cons              .>>>>>>>.....>>>>>>.....
//
# STOCKHOLM 1.0

#=GF AC  RF00168:3
#=GF ID  Lysine:3

Z99121.2/6040-5861        CAGUGAGGUAGAGGUUGCGCGGAUG.AUGAGUCACACAUGCUA.....
AE017274.1/20257-20449    CGAUGAGGUAGAGGUUGCGACUUUU.AAUAGUAAAACGGAC.......
AP001517.1/215539-215348  AGUGAUGGUAGAGGU.GCGAAAACC.AAGAGUACACAGUCUG......
AE016747.1/182196-182375  AGAUUUUGAUGAGGC.GCAUCAAUC.AUGAGUAAACUUUAGAUAAUU.
AF270308.1/2156-2331      AAUAGAGUUAGAGGUUGCAUUAUUA.AUGACUAACUUAUCAGAAGUCG
AP003187.2/139222-139393  GACCAAAGUAGAGGU.GCCGUAAUU.AAGAGUAGUCAUAAG.......
AP003194.2/187997-187828  AAAAGAGGUAGAGGC.GCGAGAAUC.AAGAUUACUAAAAUGG......
AE013149.1/9167-9356      AGGUGAGGUAGAGGC.GCGGGUCAUCAAGAGUAACAUGCCAGAGG...
AP005335.1/123141-123320  UAUCGACGUAGAGGC.GCAAUGGUA.AAGAGUAACUAUUAUU......
AE001799.1/20444-20268    .GACCCGACGGAGGC.GCGCCCGAG.AUGAGUAGGCUGUCCC......
#=GC SS_cons              .....<<<<<<.....<<<<<<<<<........<<<<<<<<.......

Z99121.2/6040-5861        .GGCUGACAGGGGCUGUUA...AACAUGUGU.AAAAGGCAU.CAGCGC
AE017274.1/20257-20449    .GAGACACAGAGAAUGUCUUAGACUCCGUUU.GAAAGGAAA.AGUUGC
AP001517.1/215539-215348  .AGAGAAAUGAGAAUCGUUG..ACGACUGUUGGAAAGGGGG.AUUCGC
AE016747.1/182196-182375  .UGUCUGCUAACAAUU.......AUAGAGUU.AAAAGGGUG.AGAUGC
AF270308.1/2156-2331      UAUGGGACAUGUGUUG......A..AUAAGU.GAAAGGUAA.UAAUGC
AP003187.2/139222-139393  .UAGCUGACAAGUGUUUU....AUGUAUGAU.GAAAGGGAU.UAUGGC
AP003194.2/187997-187828  .AGUUAAGUAGCGUAG......AAGUUUUAG.GAAAGGGAU.UAUCGC
AE013149.1/9167-9356      .UGUUAAGGGCCGAUG......AAGGUGUGU.GAAAGGGGU.GCCCGC
AP005335.1/123141-123320  .GGGGUGAUGCCAAUG......AAUAAUAGU.GAAAGGUAUCCAUUGC
AE001799.1/20444-20268    .AUCAGGGGAGGAAUCG.....GGGACGGCU.GAAAGGCGA.GGGCGC
#=GC SS_cons              .......................>>>>>>>>.......>>>.>>>>>>

Z99121.2/6040-5861        CGAAGUGUGGAGAAAGCCGAUC..CUUCUCUAUGCUGGGACUG.UAUC
AE017274.1/20257-20449    CGAAGUUUAUAUUUCUU.CUCU.GGAAAUAUGAGCUGGGGCUG.UCUC
AP001517.1/215539-215348  CGAAGUGCAGAUCGGGG.CUCAUUCCCAUUUGCGCUGGACCUA.UGUU
AE016747.1/182196-182375  CGAAAUGAUUCAUAAU..AGCA.GUUAUGAAUCGUUGGACUUAAUGGU
AF270308.1/2156-2331      CGAAAUGAUGUUAUUUC.CAUA.AAUUAGCAUUGUUGGGACAA.CUUU
AP003187.2/139222-139393  CGAAGAGAUAUUAAU...GGUG..AUUAAUAUUUCUGGGUAUA.UGUA
AP003194.2/187997-187828  CGAAGUUUUUGGCUAAUACUUU.AAGGCUAAAUGCUGGGGUUG.UAUA
AE013149.1/9167-9356      CGAAGC.GCGUAAACUUCCUUAAGGUUUACGCAGCUGGGCCUA.UGCC
AP005335.1/123141-123320  CGAAGUGAAUUGCAU...AUCA..AAGCAGUUUGCUGGGGUUG.CAUC
AE001799.1/20444-20268    CGAAGG.GUGCAGAGUUCCUCCCGCUCUGCAUGCCUGGGGGUA.UGGG
#=GC SS_cons              ...<<<<<<<<<<<<.........>>>>>>>>>>>><<<<<<<.<<<<

Z99121.2/6040-5861        UGAAUAAGUGCAGGACUGCCGCGUGC.UUU.............UUCGC
AE017274.1/20257-20449    CGAAA.GGAACAGAACUGUCACGUUU.ACAAAAUUACCGUGUAAACGU
AP001517.1/215539-215348  .GAAUAAGCAUAGGGCUGUCACAACA.CUAGCCCCAACUA.GUGCUGU
AE016747.1/182196-182375  .UAAGAGCUAUAAGUUUGUCAUUAUU.AUU...........AAAUAAU
AF270308.1/2156-2331      CGAAUAGAAGUUGUACUGUCACU....UUA...............UGU
AP003187.2/139222-139393  .UAAUAUGCAUAUAACUGUCACUUUG.AAA.............AAAGU
AP003194.2/187997-187828  .GAAUAUAUACAACACUGUCACA....AAA...............UGU
AE013149.1/9167-9356      .GAACAGGUAUAGGACUGUCACUGAAGGCUCCCCAGGC...CUUCAGU
AP005335.1/123141-123320  CGAAA.GGAACAACACUGCCAUAGUA.UUUAAUGUA.....UAACUAU
AE001799.1/20444-20268    .GAAUACCCAUACCACUGUCACGGAGGUCU............CUCCGU
#=GC SS_cons              ......>>>>>>>>>>>.<<<<<<<..................>>>>>

Z99121.2/6040-5861        GGAGGGCUAUCCGGAGA
AE017274.1/20257-20449    GGGGUGCUAUCUUAACG
AP001517.1/215539-215348  GGAGAACUAUCUCACGU
AE016747.1/182196-182375  GGAGUGCAUCACUUGUA
AF270308.1/2156-2331      GAUGUGCUACCUUAUAU
AP003187.2/139222-139393  GGAGUGCUACAAGGUAC
AP003194.2/187997-187828  GGAGAGCUAUCAUCUUA
AE013149.1/9167-9356      GGAGAGCUAUCUCGCUA
AP005335.1/123141-123320  GGAGCGCUACUGUAGGU
AE001799.1/20444-20268    GGAGAGCCGAUCGGGUC
#=GC SS_cons              >>....>>>>>>.....
//
# STOCKHOLM 1.0

#=GF AC  RF00168:4
#=GF ID  Lysine:4

AE017007.1/287994-288186  CGAUGAGGUAGAGGUUGCGACUUUU.AAGAGUA.CGACGGAC......
AP004827.1/261938-261763  AAUUGAGUUAGAGGUUGCAUGUUUA.AUUAGUA.ACUUGUCAGAAGUA
AP003187.2/139222-139393  GACCAAAGUAGAGGU.GCCGUAAUU.AAGAGUA.GUCAUAAG......
AE013149.1/9167-9356      AGGUGAGGUAGAGGC.GCGGGUCAUCAAGAGUA.ACAUGCCAGAGG..
AE013039.1/9145-9323      CGCAUAAAUAGAGGA.GCUGCCAAGCAU..GUA.UUUGGCGAGGUGUU
AE016947.1/224792-224618  AAAAGAGGUAGAGGUCGCGGUUUUU.A...UUA.CGCUUGUGG.....
AE016770.1/235405-235209  CAGGCCAGAAGAGGC.GCGUUGCCC.A..AGUAACGGUGUUGGA....
AE004193.1/5679-5861      UUUCGCCGUAGAGGA.GCGGUUACG.AAAAGUA.UCCACAGUU.....
AP005342.1/28132-28310    UUUUGCAGAAGAGGA.GCACUGCCC.A..GGCA.GAUGUUUUGUGGA.
AE001799.1/20444-20268    .GACCCGACGGAGGC.GCGCCCGAG.AUGAGUA.GGCUGUCCC.....
#=GC SS_cons              .....<<<<<<.....<<<<<<<<<.........<<<<<<<<......

AE017007.1/287994-288186  .....GAGACACAGAGAAUGUCACCGACUCCGUUUGAAAGGAAAAGUU
AP004827.1/261938-261763  UUU..AUGGUACAUAAGUUG......A..ACAAGUGAAAGGUAAAGAU
AP003187.2/139222-139393  .....UAGCUGACAAGUGUUUU....AUGUAUGAUGAAAGGGAUUAUG
AE013149.1/9167-9356      .....UGUUAAGGGCCGAUG......AAGGUGUGUGAAAGGGGUGCCC
AE013039.1/9145-9323      AAGGAGAAGAACCUCCAAUA......CUCGCUGAAGAA.GGUUUGGCU
AE016947.1/224792-224618  .....AGUGAGAGGACACUGGG....AAGCAAGUUUA..GGAUCAAUC
AE016770.1/235405-235209  .....GGAGCCAGUCCUGUG......AUAACACCUGAGGGGGUGCAUC
AE004193.1/5679-5861      .....GGGGUGAUGCCAAUG......AAUUGUGGAAAAAGGCGUUGCC
AP005342.1/28132-28310    .....GCCGCAACUCCAACA......CAGAACAUUCAGGGGGAGUAGU
AE001799.1/20444-20268    .....AUCAGGGGAGGAAUCG.....GGGACGGCUGAAAGGCGAGGGC
#=GC SS_cons              ...........................>>>>>>>>......>>>>>>>

AE017007.1/287994-288186  GCCGAAGUUUAUAUUUCUU.CUCU.GGAAAUAUGAGCUGGG.GCUG.U
AP004827.1/261938-261763  GCCGAAAUAGAUAUAAAC..CAUA.AAUUAUAUCUAUUGGG.ACAG.U
AP003187.2/139222-139393  GCCGAAGAGAUAUUAAU...GGUG..AUUAAUAUUUCUGGG.UAUA.U
AE013149.1/9167-9356      GCCGAAGC.GCGUAAACUUCCUUAAGGUUUACGCAGCUGGG.CCUA.U
AE013039.1/9145-9323      GCCGAAAGGGUGAGCUUG..UUCU.UGAGCUCAUCCUUGGU.GGUA.A
AE016947.1/224792-224618  GCCGAAAUGCAUAACGGAGCCUCU.UCUGUUGUGUGUUGGG.ACGU.A
AE016770.1/235405-235209  GCCGAGGUGAUUGAACGGCUGGCC.ACGUUCA.UCAUCGGCUACAG.G
AE004193.1/5679-5861      GCCGAAGUCAACUUGCCC..AUCA.ACGCA.GUUGGCUGGG.GUUA.C
AP005342.1/28132-28310    GCCGAGGUAGAUCAAAAU..UGCAGGAUUUGAUCUGUCGGU.UGACUU
AE001799.1/20444-20268    GCCGAAGG.GUGCAGAGUUCCUCCCGCUCUGCAUGCCUGGG.GGUA.U
#=GC SS_cons              >>...<<<<<<<<<<<<.........>>>>>>>>>>>><<<.<<<<.<

AE017007.1/287994-288186  CUCC.GAAA.GGAACAGAACUGUCACGUUU.ACAAAAUUACCGUG...
AP004827.1/261938-261763  UUUC.GAAUAGGAACUGUACUGUCACA....GAA..............
AP003187.2/139222-139393  GUA..UAAUAUGCAUAUAACUGUCACUUUG.AAA..............
AE013149.1/9167-9356      GCC..GAACAGGUAUAGGACUGUCACUGAAGGCUCCCCAGGC......
AE013039.1/9145-9323      AC.A.CAAA..GUUUACCACUGUCAUGGGA.CCU..............
AE016947.1/224792-224618  AGU..UAAGAGCUUGCGGACUGUCUUAGUAGUGA..............
AE016770.1/235405-235209  GGC..UAAA.UCCCCUGGGUUGUCACCAGA.AGCGUUCGCAGUCGGGC
AE004193.1/5679-5861      AUU..CAAUAGGUGUAACACUGCCAUAGUC.UAUAUUGUUGUU.....
AP005342.1/28132-28310    GGGUUGAGU.CCCA.UCAACUGUCAUCAGC.UCA..............
AE001799.1/20444-20268    GGG..GAAUACCCAUACCACUGUCACGGAGGUCU..............
#=GC SS_cons              <<<.......>>>>>>>>>>>.<<<<<<<...................

AE017007.1/287994-288186  .......UAAACGUGGGGUGCUAUCUUAACG
AP004827.1/261938-261763  ...........UGUGAUGUGCUACCUUAUAU
AP003187.2/139222-139393  .........AAAGUGGAGUGCUACAAGGUAC
AE013149.1/9167-9356      .......CUUCAGUGGAGAGCUAUCUCGCUA
AE013039.1/9145-9323      .........CCCAUGAAGCGCUAUUUAUGCA
AE016947.1/224792-224618  ........UGCUAAGUUGUGCUAUGUUUCGU
AE016770.1/235405-235209  GUUUCGCAAGUGGUGGAGCACUUCUGGGUGA
AE004193.1/5679-5861      .......AAACUAUGGAGCGCUACUGUAGGG
AP005342.1/28132-28310    .......GCCUGAUGAAGAGCUUCUGAGAUG
AE001799.1/20444-20268    ........CUCCGUGGAGAGCCGAUCGGGUC
#=GC SS_cons              .........>>>>>>>....>>>>>>.....
//
# STOCKHOLM 1.0

#=GF AC  RF00050:0
#=GF ID  RFN:0

X51510.1/938-1082       UGUAUCCUUCGGGGCAGGGUGGAAAUCCCGACCGGCGGUAGUAAAGCACA
AJ010128.1/362-218      CAGCAUCUUCGGGGUCGGGUGAAAUUCCCAACCGGCGGUGAUGAAGUGCA
AF269712.1/1300-1435    AUUCAUCUUCGGGGUAGGGUGUAAUUCCCAACCGGCAGUAAUCU......
AF269345.1/3001-2863    UAUUUCUUUCGGGGCAGGGUGAAAUUCCCAACCGGCAGUAAAUU......
AE014142.1/1906-2030    AAGUGUCUUCAGGGCAGGGUGUGAUUCCCGACCGGCGGUGACUAGGUAAC
AL766851.1/11027-10882  AGGUGUCUUCAGGGCAGGGUGUAAUUCCCGACCGGCGGUAAUCGCUUCCA
AL766847.1/1-103        ......CUUCGGGGUCAGGUGAAAAUCCUAACCGGCGGUA..........
AE010459.1/9470-9585    UAAAGUCUUCAGGGCAGGGUGAAAUUCCCGACCGGUGGUA..........
AE004431.1/9358-9220    CAAUAUUCUCAGGGCGGGGCGAAAUUCCCCACCGGUGGUAUGCCGCAAGG
AE001820.1/156-35       AAACGCUCUCGGGGCAGGGUGGAAUUCCCGACCGGCGGUGA.........
#=GC SS_cons            <<<<<<<<<<......<<<.......>>>.....<<<<............

X51510.1/938-1082       UUUGCUUUA...............GAGCCCGUGACCCGUGUGC.......
AJ010128.1/362-218      AACUUCU.................AAGUCCGUGACCCGUUUUCA......
AF269712.1/1300-1435    ........................AAGCCUGCGA.CGACAACGUAUUAAU
AF269345.1/3001-2863    ........................GAGCCUGCGACCCACUAAUAUUGUUU
AE014142.1/1906-2030    UAG.....................AAGUCCGCGAGC..............
AL766851.1/11027-10882  ACUUAUUUGUCAGUUGUGAAGCAUCAGUCCGCGAGC..............
AL766847.1/1-103        ........................UAGUCCGCGAGC..............
AE010459.1/9470-9585    ........................CAGUCCACGA................
AE004431.1/9358-9220    C.......................GAGCCCACGAGCGCUCGAUU......
AE001820.1/156-35       ........................AAGCCCGCGAGCC.............
#=GC SS_cons            ...........................>>>>...................

X51510.1/938-1082       .AUAAGCACGCGGUGGAUUCAGUUUAA.GCUGAAGCCGACAGUGAAAGUC
AJ010128.1/362-218      .ACUCGAAAACGGUGGAUCUAGUGAAACUCUAGGGCCGACAG.UAUAGUC
AF269712.1/1300-1435    .UUUUGCUUUGUCUUGAUUCAGUGAGAGUCUGAAGCCGACAG.UAUAGUC
AF269345.1/3001-2863    UUGAUGUUAGUGGCUGAUCUAGUGUGAAUCUAGAGCCGACAGUUAGAGUC
AE014142.1/1906-2030    ........GCAAGCUGAUGUGGUGUAACUCCACAACCGACAG.UAUAGUC
AL766851.1/11027-10882  ........GAAAGCUGAUGUGGUGAGAUUCCACAACCGACAG.UAAAGUC
AL766847.1/1-103        .....UUUCGAGCAUGAACUGGUGUGAUUCCAGUACCGACAG.UAAAGUC
AE010459.1/9470-9585    ..AAGCAUUUGCUUUGAUUUGGUGAAAUUCCAAAACCGACAG.UAGAGUC
AE004431.1/9358-9220    .CGUCGAGGUCAGCAGAUCUGGUGAGAAGCCAGGGCCGACGGUUACAGUC
AE001820.1/156-35       .CUCUCAGGAGGGUUGACCCGGUGGAAUUCCGGGGCCGACGGUGAAAGUC
#=GC SS_cons            .................<<<<<.......>>>>>.....<<<.......>

X51510.1/938-1082       UGGAUGGGAGAAGGAUGAU.
AJ010128.1/362-218      UGGAUGGGAGAAGGAUAUGU
AF269712.1/1300-1435    UGGAUGGGAGAAGAUGGAG.
AF269345.1/3001-2863    UGGAUGGGAGAAAGAAGUU.
AE014142.1/1906-2030    UGGAUGAGAGAAGACCGGG.
AL766851.1/11027-10882  UGGAUGGGAGAAGACAAAG.
AL766847.1/1-103        UGGAUGAGAGAAG.......
AE010459.1/9470-9585    UGGAUGGGAGAAGAAUUAG.
AE004431.1/9358-9220    CGGAUGAGAGAGAAUGACA.
AE001820.1/156-35       CGGAUGGGAGAGAGCGUGA.
#=GC SS_cons            >>.......>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00050:1
#=GF ID  RFN:1

AL939108.1/337004-336876  CAGCGCACUCCGGGGUCGGUGAAAGUCCGAACCGGCGGUUA.......
X95955.1/376-523          UGUAUCCUUCGGGGCUGGGUGAAAAUCCCGACCGGCGGUAAUAAGGCG
AJ010128.1/362-218        CAGCAUCUUCGGGGUCGGGUGAAAUUCCCAACCGGCGGUGAUGAAGUG
AP004827.1/34791-34657    AUUCAUCUUCGGGGUCGGGUGUAAUUCCCAACCGGCAGUAAAUU....
AP003187.2/100445-100560  AAAAUUCUUCAGGGCAGGGUGAAAUUCCCUACCGGCGGUA........
AL591790.1/15823-15987    AAGCGUUCUCAGGGCGGGGUGAAAUUCCCCACCGGCGGUAGCGAACAC
AL646083.1/100911-100755  GUACGUCUUCAGGGCGGGGUGGAAUUCCCCACCGGCGGUAUGCGGGCC
M64472.1/901-1048         GCUUAUUCUCAGGGCGGGGCGAAAUUCCCCACCGGCGGUAAAUCAACU
U27202.1/210-335          AAUAAUCUUCAGGGCAGGGUGAAAUUCCCGAUCGGCGGUA........
AJ009832.1/4549-4670      GAUCGCUCUCGGGGCAGGGUGGAAUUCCCGACCGGCGGUGA.......
#=GC SS_cons              <<<<<<<<<<......<<<.......>>>.....<<<<..........

AL939108.1/337004-336876  ........................CAGUCCGCGACCCGGUCGCC....
X95955.1/376-523          CUCCUGCGCUUUA...........CAGCCCGUGACCCGUAUGC.....
AJ010128.1/362-218        CAAACUUCU...............AAGUCCGUGACCCGUUUUCA....
AP004827.1/34791-34657    ........................AAGCCUGCGACCUGCUAGUA...U
AP003187.2/100445-100560  ........................AAGCCCGCGAGC............
AL591790.1/15823-15987    AGGAUCGGGAAUGGUCGGUGGUCGGAGCCCGCGAGCGCUUCGCAUUUC
AL646083.1/100911-100755  AUCGGUCUGC..............GAGCCCGCGAGCGCCCGGCAUGCG
M64472.1/901-1048         CAGUUGA.................AAG.CCGCGAGCGCUUUGGGUGCG
U27202.1/210-335          ........................AAGUCCGCGAGCCGAACGA.....
AJ009832.1/4549-4670      ........................AAGCCCGCGAGCC...........
#=GC SS_cons              ...........................>>>>.................

AL939108.1/337004-336876  .......UCCAGCGACCGGUUGACCAGGUGAAAUUCCUGGACCGACGG
X95955.1/376-523          .......AUCUGUAUACGGUGGAUUCAGUGAAAAGCUGAAGCCGACAG
AJ010128.1/362-218        .......ACUCGAAAACGGUGGAUCUAGUGAAACUCUAGGGCCGACAG
AP004827.1/34791-34657    GUA....UCAUAUUAGUGGCUGAUCUAGUGAGAUUCUAGAGCCGACAG
AP003187.2/100445-100560  ..........UAGUUUAGCAUGAUUCGGUGAAAUUCCGAGGCCGACAG
AL591790.1/15823-15987    G......UGCGAAGGUCAGCAGAUCCGGUCGAAUUCCGGAGCCGACGG
AL646083.1/100911-100755  CAGCGCAUGCCGGGGUCAGCAGAUCCGGUGAGAUGCCGGGGCCGACGG
M64472.1/901-1048         AA.....CUCAAAGGACAGCAGAUCCGGUGUAAUUCCGGGGCCGACGG
U27202.1/210-335          .......AAAAGGUUUGGCAGGAACCGGUGAGAUUCCGGUACCGACAG
AJ009832.1/4549-4670      .......CCCUUCUGGGGGUUGACCCGGUGGAAUUCCGGGGCCGACGG
#=GC SS_cons              .......................<<<<<.......>>>>>.....<<<

AL939108.1/337004-336876  UUAAAGUCCGGAUGGGAGGCAGUGCGC.
X95955.1/376-523          UGAAAGUCUGGAUGGGAGAAGGAUGAG.
AJ010128.1/362-218        .UAUAGUCUGGAUGGGAGAAGGAUAUGU
AP004827.1/34791-34657    .UAUAGUCUGGAUGGGAGAAGAUGGAG.
AP003187.2/100445-100560  .UAAAGUCUGGAUGAAAGAAGAAUAUC.
AL591790.1/15823-15987    UUAUAGUCCGGAUGGAAGAGAGCAAGC.
AL646083.1/100911-100755  UCAGAGUCCGGAUGGAAGAAGAUGUGC.
M64472.1/901-1048         UUAGAGUCCGGAUGGGAGAGAGUAACG.
U27202.1/210-335          .UAUAGUCUGGAUGGAAGAAGAUGAAA.
AJ009832.1/4549-4670      UGAAAGUCCGGAUGGGAGAGAGCGAAG.
#=GC SS_cons              .......>>>.......>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00050:2
#=GF ID  RFN:2

AP005214.1/86557-86391    GGGUGUUCUCAGGGCGGGGUGUAAUUCCCCACCGGCGGUGAGAGUGUC
AE014618.1/8796-8645      UGUCAGUUUCAGGG.AAGGUGCAAUUCCUUACUGGCGGUAACCUGCAC
AE001878.1/30-178         GACCUCUUUCGGGGCGGGGCGAAAUUCCCCACCGGCGGUAAGUUCUCC
AL591981.1/267609-267487  GUUCAUCUUCGGGGCAGGGUGCAAUUCCCGACCGGUGGUUA.......
AL766851.1/11027-10882    AGGUGUCUUCAGGGCAGGGUGUAAUUCCCGACCGGCGGUAAUCGCUUC
AL646083.1/100911-100755  GUACGUCUUCAGGGCGGGGUGGAAUUCCCCACCGGCGGUAUGCGGGCC
M64472.1/901-1048         GCUUAUUCUCAGGGCGGGGCGAAAUUCCCCACCGGCGGUAAAUCAACU
U27202.1/210-335          AAUAAUCUUCAGGGCAGGGUGAAAUUCCCGAUCGGCGGUA........
AE006176.1/9504-9349      GCGCAUUCUCAGGGCAGGGUGAAAUUCCCUACCGGUGGUAAAUGUAUA
AE001820.1/156-35         AAACGCUCUCGGGGCAGGGUGGAAUUCCCGACCGGCGGUGA.......
#=GC SS_cons              <<<<<<<<<<......<<<.......>>>.....<<<<..........

AP005214.1/86557-86391    CUCCAGAUGGGGAGGCUC.........AAGCCCGCGA.GCGCCACCGU
AE014618.1/8796-8645      CCCGGGUUUCAUAACGGGGAUGGCAGGAAGCCCGCGA.CCCGC.....
AE001878.1/30-178         CGAAC......................AAGCCCGCGAAGCCCGCGCAA
AL591981.1/267609-267487  ...........................AAGUCCACGA.UCUGC.....
AL766851.1/11027-10882    CAACUUAUUUGUCAGUUGUGAAGCA.UCAGUCCGCGA.GC........
AL646083.1/100911-100755  AUCGGUCUGC.................GAGCCCGCGA.GCGCCCGGCA
M64472.1/901-1048         CAGUUGA....................AAG.CCGCGA.GCGCUUUGGG
U27202.1/210-335          ...........................AAGUCCGCGA.GCCGAACGA.
AE006176.1/9504-9349      ACAU.......................AAGCCCACGA.GCGUUUACUA
AE001820.1/156-35         ...........................AAGCCCGCGA.GCC.......
#=GC SS_cons              ..............................>>>>..............

AP005214.1/86557-86391    AUUCCGCUUAUGG....AGGGUGGGUCAGCAGAUCCG.....GUGUGA
AE014618.1/8796-8645      .....................GCAAGCGGCUGAUCCG.....GUGAGA
AE001878.1/30-178         AC...............CGCACCACGCGCCGGGCCCGAUGCCGCGCAA
AL591981.1/267609-267487  .................UUUUUUAGCAGUUGACUCUG.....GUGUAA
AL766851.1/11027-10882    ........................GAAAGCUGAUGUG.....GUGAGA
AL646083.1/100911-100755  UGCGCAGCGCA......UGCCGGGGUCAGCAGAUCCG.....GUGAGA
M64472.1/901-1048         UGCGAA...........CUCAAAGGACAGCAGAUCCG.....GUGUAA
U27202.1/210-335          .................AAAAGGUUUGGCAGGAACCG.....GUGAGA
AE006176.1/9504-9349      UUUCAUGUCACAAGAGAUAGUAAAGUCAGCAGAUUUG.....GUGAGA
AE001820.1/156-35         .................CUCUCAGGAGGGUUGACCCG.....GUGGAA
#=GC SS_cons              .................................<<<<.....<.....

AP005214.1/86557-86391    UUCCGGAGCCGACGGUCAUAGUCCGGAUGGAAGAGAACCGUG
AE014618.1/8796-8645      UUCCGGAGCCAACGG.UAUAGUCCGGAUGGAAGAAACGAGGG
AE001878.1/30-178         CUCGGCAGCCGACGGUCACAGUCCGGACGAAAGAAGGAGGAG
AL591981.1/267609-267487  UUCCAGGACCGACAG.UAUAGUCUGGAUGGGAGAAGAUGUUG
AL766851.1/11027-10882    UUCCACAACCGACAG.UAAAGUCUGGAUGGGAGAAGACAAAG
AL646083.1/100911-100755  UGCCGGGGCCGACGGUCAGAGUCCGGAUGGAAGAAGAUGUGC
M64472.1/901-1048         UUCCGGGGCCGACGGUUAGAGUCCGGAUGGGAGAGAGUAACG
U27202.1/210-335          UUCCGGUACCGACAG.UAUAGUCUGGAUGGAAGAAGAUGAAA
AE006176.1/9504-9349      AUCCAAAGCCGACAG.UAUAGUCUGGAUGAAAGAGAAUAAGC
AE001820.1/156-35         UUCCGGGGCCGACGGUGAAAGUCCGGAUGGGAGAGAGCGUGA
#=GC SS_cons              ..>>>>>.....<<<.......>>>.......>>>>>>>>>>
//
# STOCKHOLM 1.0

#=GF AC  RF00050:3
#=GF ID  RFN:3

AP005274.1/66442-66279    UUUUGUUCUCAGGGCGGGGCGAAAUUCCCCACCGGCGGUAAGACGAAU
AE001878.1/30-178         GACCUCUUUCGGGGCGGGGCGAAAUUCCCCACCGGCGGUAAGUUCUCC
X95955.1/376-523          UGUAUCCUUCGGGGCUGGGUGAAAAUCCCGACCGGCGGUAAUAAGGCG
AL591981.1/267609-267487  GUUCAUCUUCGGGGCAGGGUGCAAUUCCCGACCGGUGGUUA.......
AF269712.1/1300-1435      AUUCAUCUUCGGGGUAGGGUGUAAUUCCCAACCGGCAGUAAUCU....
AE006360.1/976-840        AAAUAUCUUCAGGGCACCGUGUAAUUCGGGACCGGCGGUAAAUAGGGC
AE014142.1/1906-2030      AAGUGUCUUCAGGGCAGGGUGUGAUUCCCGACCGGCGGUGACUAGGUA
AE009695.1/6814-6651      GCUUGUUCUCGGGGCGGGGUGAAACUCCCCACCGGCGGUAUGAAAAGC
AE004431.1/9358-9220      CAAUAUUCUCAGGGCGGGGCGAAAUUCCCCACCGGUGGUAUGCCGCAA
AE012168.1/3092-3260      GAACGUCUUCAGGGCGGGGUGCGAUUCCCCACCGGCGGUAUGCAUGCG
#=GC SS_cons              <<<<<<<<<<......<<<.......>>>.....<<<<..........

AP005274.1/66442-66279    CAUCAGAUAUGACUAGUUGAGCCCGCGA.GCGCCACCAACUAGCAAUG
AE001878.1/30-178         CGAAC.............AAGCCCGCGAAGCCCGCGCAAAC.......
X95955.1/376-523          CUCCUGCGCUUUA.....CAGCCCGUGA.CCCGUAUGC..........
AL591981.1/267609-267487  ..................AAGUCCACGA.UCUGC..............
AF269712.1/1300-1435      ..................AAGCCUGCGA..CGACAACGUAUUAAU...
AE006360.1/976-840        UUUGACCUUAU.......GACUCCGCGAUUCGCUAC............
AE014142.1/1906-2030      ACUAG.............AAGUCCGCGA.GC.................
AE009695.1/6814-6651      AAUUUUC...........AAGCCCGCGA.GCGCCUGAAAUGGAAGCCG
AE004431.1/9358-9220      GGC...............GAGCCCACGA.GCGCUCGAUU.........
AE012168.1/3092-3260      CAAGCGUGU.........GAGCCCGCGA.GCGCUUCGCUGCCGAUCUC
#=GC SS_cons              .....................>>>>.......................

AP005274.1/66442-66279    G...............UUUGUGGGUCAGCAGAUCCG.....GUUAAAU
AE001878.1/30-178         ................CGCACCACGCGCCGGGCCCGAUGCCGCGCAAC
X95955.1/376-523          ................AUCUGUAUACGGUGGAUUCA.....GUGAAAA
AL591981.1/267609-267487  ................UUUUUUAGCAGUUGACUCUG.....GUGUAAU
AF269712.1/1300-1435      ................UUUUGCUUUGUCUUGAUUCA.....GUGAGAG
AE006360.1/976-840        .......................GGCGAUUGAAGCA.....GUGAGAA
AE014142.1/1906-2030      .......................GCAAGCUGAUGUG.....GUGUAAC
AE009695.1/6814-6651      AUUCGCAUGCCA....UUUCAGGGUCAGCAGAUCCG.....GUGAGAU
AE004431.1/9358-9220      ................CGUCGAGGUCAGCAGAUCUG.....GUGAGAA
AE012168.1/3092-3260      UCGCUGAGAGCACGGCGGUGAAGGUCAGCAGAUCCG.....GUGCGAU
#=GC SS_cons              ................................<<<<.....<......

AP005274.1/66442-66279    UCCGGAGCCGACGGUCAUAGUCCGGAUGCAAGAGAACCGUG
AE001878.1/30-178         UCGGCAGCCGACGGUCACAGUCCGGACGAAAGAAGGAGGAG
X95955.1/376-523          GCUGAAGCCGACAGUGAAAGUCUGGAUGGGAGAAGGAUGAG
AL591981.1/267609-267487  UCCAGGACCGACAG.UAUAGUCUGGAUGGGAGAAGAUGUUG
AF269712.1/1300-1435      UCUGAAGCCGACAG.UAUAGUCUGGAUGGGAGAAGAUGGAG
AE006360.1/976-840        UCUGCUAGCGACAG.UAAAGUCUGGAUGGAAGAAGAUGAAC
AE014142.1/1906-2030      UCCACAACCGACAG.UAUAGUCUGGAUGAGAGAAGACCGGG
AE009695.1/6814-6651      GCCGGAGCCGACGGUUAAAGUCCGGAUGGAAGAGAGCGAAU
AE004431.1/9358-9220      GCCAGGGCCGACGGUUACAGUCCGGAUGAGAGAGAAUGACA
AE012168.1/3092-3260      GCCGGGGCCGACGG.UAUAGUCCGGAUGAAAGAAGACGGCC
#=GC SS_cons              .>>>>>.....<<<.......>>>.......>>>>>>>>>>
//
# STOCKHOLM 1.0

#=GF AC  RF00050:4
#=GF ID  RFN:4

AP005274.1/66442-66279    UUUUGUUCUCAGGGCGGGGCGAAAUUCCCCACCGGCGGUAAGACGAAU
AL939108.1/337004-336876  CAGCGCACUCCGGGGUCGGUGAAAGUCCGAACCGGCGGUUA.......
AE014618.1/8796-8645      UGUCAGUUUCAGGG.AAGGUGCAAUUCCUUACUGGCGGUAACCUGCAC
L09228.1/7992-8136        UUGUAUCUUCGGGGCAGGGUGGAAAUCCCGACCGGCGGUAGUAAAGCA
AP004827.1/34791-34657    AUUCAUCUUCGGGGUCGGGUGUAAUUCCCAACCGGCAGUAAAUU....
AE007574.1/3571-3685      GAUGUUCUUCAGGGAUGGGUGAAAUUCCCAAUCGGCGGUA........
AE006333.1/7352-7468      AUAAAUCUUCAGGGCAGGGUGUAAUUCCCUACCGGCGGUA........
AP003011.2/168184-168036  UAAAGUUCUCAGGGCGGGGUGAAAGUCCCCACCGGCGGUAAGGGCCUC
AE006176.1/9504-9349      GCGCAUUCUCAGGGCAGGGUGAAAUUCCCUACCGGUGGUAAAUGUAUA
AE004431.1/9358-9220      CAAUAUUCUCAGGGCGGGGCGAAAUUCCCCACCGGUGGUAUGCCGCAA
#=GC SS_cons              <<<<<<<<<<......<<<.......>>>.....<<<<..........

AP005274.1/66442-66279    CAUCAGAUAUGACUAGUU.........GAGCCCGCGAGCGCCACCAAC
AL939108.1/337004-336876  ...........................CAGUCCGCGACCCGGUCGCC.
AE014618.1/8796-8645      CCCGGGUUUCAUAACGGGGAUGGCAGGAAGCCCGCGACCCGC......
L09228.1/7992-8136        CAUUUGCUUUA................GAGCCCGUGACCCGUGUGC..
AP004827.1/34791-34657    ...........................AAGCCUGCGACCUGCUAGUA.
AE007574.1/3571-3685      ...........................AAGCCCGCAAGCC........
AE006333.1/7352-7468      ...........................UAGCCCGCGAGC.........
AP003011.2/168184-168036  AAACCC.....................AAGCCCGCGAGCGCUUUCCAA
AE006176.1/9504-9349      ACAU.......................AAGCCCACGAGCGUUUACUAU
AE004431.1/9358-9220      GGC........................GAGCCCACGAGCGCUCGAUU.
#=GC SS_cons              ..............................>>>>..............

AP005274.1/66442-66279    UAGCAAUGG.......UUUGUGGGUCAGCAGAUCCGGUUAAAUUCCGG
AL939108.1/337004-336876  ................UCCAGCGACCGGUUGACCAGGUGAAAUUCCUG
AE014618.1/8796-8645      ....................GCAAGCGGCUGAUCCGGUGAGAUUCCGG
L09228.1/7992-8136        ................AUAAGCACGCGGUGGAUUCAGUUUAA.GCUGA
AP004827.1/34791-34657    ..UGUA..........UCAUAUUAGUGGCUGAUCUAGUGAGAUUCUAG
AE007574.1/3571-3685      ......................AUUUGGCAGAUCCGGUUAAACUCCGG
AE006333.1/7352-7468      ..................UGCUUGCAGCAUGAUUCGGUGAAACUCCGA
AP003011.2/168184-168036  GACAAU..........UGGAAAGGUCAGCAGAUCCGGUGUGAUUCCGG
AE006176.1/9504-9349      UUCAUGUCACAAGAGAUAGUAAAGUCAGCAGAUUUGGUGAGAAUCCAA
AE004431.1/9358-9220      ................CGUCGAGGUCAGCAGAUCUGGUGAGAAGCCAG
#=GC SS_cons              ................................<<<<<.......>>>>

AP005274.1/66442-66279    AGCCGACGGUCAUAGUCCGGAUGCAAGAGAACCGUG
AL939108.1/337004-336876  GACCGACGGUUAAAGUCCGGAUGGGAGGCAGUGCGC
AE014618.1/8796-8645      AGCCAACGG.UAUAGUCCGGAUGGAAGAAACGAGGG
L09228.1/7992-8136        AGCCGACAGUGAAAGUCUGGAUGGGAGAAGGAUGAU
AP004827.1/34791-34657    AGCCGACAG.UAUAGUCUGGAUGGGAGAAGAUGGAG
AE007574.1/3571-3685      GGCCGACAGUUAAAGUCUGGAUGAAAGAAGAAAUAG
AE006333.1/7352-7468      GGCCGACAG.UAUAGUCUGGAUGAAAGAAGAUAAUA
AP003011.2/168184-168036  AGCCGACGGUUAGAGUCCGGAUGAAAGAGGACGAAA
AE006176.1/9504-9349      AGCCGACAG.UAUAGUCUGGAUGAAAGAGAAUAAGC
AE004431.1/9358-9220      GGCCGACGGUUACAGUCCGGAUGAGAGAGAAUGACA
#=GC SS_cons              >.....<<<.......>>>.......>>>>>>>>>>
//
# STOCKHOLM 1.0

#=GF AC  RF00175:0
#=GF ID  Retroviral_psi:0

K03454.1/240-356    GGACUCGGCUUGCUGAAGCGCGCACGGCAAGAGGCGA.GGGGCAGC..GACUGG
AF190127.1/72-196   GGACUCGGCUUGCUGAAGUGCACACAGCAAGAGGCGAGGGG.CGGCGUGACUGG
AF538304.1/695-811  GGACUCGGCUUGCUGAAACGCGCGCGGCAAGAGGCGA.GGGGCGGC..GACCGG
AF179368.1/10-127   GGACUCGGCUUGCUGAGGUGCACGCAGCAAGAGGCGA.GAG.CGGC..GGCUGG
AF110972.1/83-200   GGACUCGGCUUGCUGAAGUGCACUCGGCAAGAGGCGA.GGG.AGGC..GACUGG
AY161885.1/12-128   GGACUCGGCUUGCUGAGGUGCACACAGCAAGAGGCGA.GAAGCGGC..GACUGG
AB032741.1/666-779  GGACUCGGCUUGCUGAGGUGCACACAGCAAGAGGCGA.GAG.CGGC..GACUGG
AF286233.1/39-156   GGACUCGGCUUGCUAAAGUGCACUUGGCAAGAGGCGA.GAG.CGGC..GACUGG
AF286236.1/192-308  GGACUCGGCUUGCUGAAGUGCACACGGCAAGAGGCGAGGGG.CGGC..GACUGG
AY118154.1/240-357  GGACUCGGCUUGCUGAGGUGCACUCGGCAAGAGGCGA.GAG.CGGC..GGCUGG
#=GC SS_cons        ...<<<<.<<<<<<<.........>>>>>>>...>>>.>....<<<..<<<<..

K03454.1/240-356    UGAGUACGCU...AA..AA..UUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAU
AF190127.1/72-196   UGAGUACGCC.GAAAAUUUUUAUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAU
AF538304.1/695-811  UGAGUACGCCA..AA..U...AUUUUGACUAGCGGAGGCUAUAAGGAGAGAGAU
AF179368.1/10-127   UGAGUACGCC..AA...AAAAUUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAU
AF110972.1/83-200   UGAGUACGCC...AA..UUUUAUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAU
AY161885.1/12-128   UGAGUACGCCA..UA..A...AUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAU
AB032741.1/666-779  UGAGUACGCC.........AAAUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAU
AF286233.1/39-156   UGAGUACGCC...AA..UUUUUAUUUGACUAGCGGAGGCUAGAAGGAGAGAGAU
AF286236.1/192-308  UGAGUACGCC.......GAAAUUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAU
AY118154.1/240-357  UGAGUACGCC...AA..AUUUUAUUUGACUAGCGGAGGCUAGAAGGAGAGAGAU
#=GC SS_cons        ..>>>.>>>>..................<<<<<....>>>>>............

K03454.1/240-356    GGGUGCGAGAGCGUCAGUA
AF190127.1/72-196   GGGUGCGAGAGCGUCAGUA
AF538304.1/695-811  GGGUGCGAGAGCGUCAGUA
AF179368.1/10-127   GGGUGCGAGAGCGUCAGUA
AF110972.1/83-200   GGGUGCGAGAGCGUCAAUA
AY161885.1/12-128   GGGUGCGAGAGCGUCAGUA
AB032741.1/666-779  GGGUGCGAAAGCGUCAGUA
AF286233.1/39-156   GGGUGCGAGAGCGUCAGUA
AF286236.1/192-308  GGGUGCGAGAGCGUCAGUA
AY118154.1/240-357  GGGUGCGAGAGCGUCAGCA
#=GC SS_cons        .<<<<<....>>>>>....
//
# STOCKHOLM 1.0

#=GF AC  RF00175:1
#=GF ID  Retroviral_psi:1

K03454.1/240-356    GGACUCGGCUUGCUGAAGCGCGCACGGCAAGAGGCGA.GGGGCAGCGACUGGUG
AF286253.1/173-290  GGACUCGGCUUGCUGAAGUGCACUCGGCAAGAGGCGAGGGG.CGGCGACUGGUG
AY161881.1/12-129   GGACUCGGCUUGCUGAAGCGCGCACAGCAAGAGGCGA.GGGGCGGCGGCUGGUG
AF443113.1/69-186   GGACUCGGCUUGCUGAAGUGUACUCGGCAAGAGGCGA.GAG.CGGCGACUGGUG
AF076998.1/46-162   GGACUCGGCUUGCUGAAGCGCGCACGGCAAGAGGCGA.GGGGUAGCGACUGGUG
AF414006.1/702-819  GGACUCGGCUUGCUGAGGUGCACACAGCAAGAGGCGA.GAG.CGGUGACUGGUG
AF192135.1/86-206   GGACUCGGCUUGCUGAAGUGCACACGGCAAGAGGCGA.GAG.CGGCGACUGGUG
AY161882.1/12-127   GGACUCGGCUUGCUGAAGGGCACACAGCAAGAGGCGA.GAG.CGGCGACUGGAG
AJ288981.1/736-854  GGACUCGGCUUGCUGAGGUGCACACGGCAAGAGGCGA.GGGGCGGCGACCGGUG
AF492624.1/73-186   GGACUCGGCUUGCUGAGGUGCACGCAGCAAGAGGCGA.GAG.CGGCGACUGGUG
#=GC SS_cons        ...<<<<.<<<<<<<.........>>>>>>>...>>>.>....<<<<<<<....

K03454.1/240-356    AGUACGCU.AA..AA..UUUUUGACUAGCGGAGGCUAGAA.GGAGAGAGAUGGG
AF286253.1/173-290  AGUACGCCU....AAAAUUUUUGACUAGCGGAGGCUAGAG.GGAGAGAGAUGGG
AY161881.1/12-129   AGUACGCCAAA..A...CUUUUGACUAGCGGAGGCUAGAAGGGAGAGAGAUGGG
AF443113.1/69-186   AGUACGCC.AA..AUUUUAUUUGACUAGCGGAGGCUAGAA.GGAGAGAGAUGGG
AF076998.1/46-162   AGUACGCUAAA..A...CUUGUGACUAGCGGAGGCUAGAA.GGAGAGAGAUGGG
AF414006.1/702-819  AGUACGCC.UA..AAGAUUUUUGACUAACGGAGGCUAGAA.GGAGAGAGAUGGG
AF192135.1/86-206   AGUACGCCGAAAAAUUUGUUUUGACUAGCGGAGGCUAGAA.GGAGAGAGAUGGG
AY161882.1/12-127   AGUACGCCAUA..A...AUCUUGACUAGCGGAGGCUAGAA.GGAGAGAGAUGGG
AJ288981.1/736-854  AGUACGCC.AA..UUUUUGUUUGACUAGCGGAGGCUAGAA.GGAGAGAGAUGGG
AF492624.1/73-186   AGUACGCC.......AAUUUUUGACUAGCAGAGGCUAGAA.GGAGAGAGAUGGG
#=GC SS_cons        >>>.>>>>................<<<<<....>>>>>..............<<

K03454.1/240-356    UGCGAGAGCGUCAGUA
AF286253.1/173-290  UGCGAGAGCGUCAAUA
AY161881.1/12-129   UGCGAGAGCGUCAGUA
AF443113.1/69-186   UGCGAGAGCGUCAAUA
AF076998.1/46-162   UGCGAGAGCGUCAGUA
AF414006.1/702-819  UGCGAGAGCGUCAGUA
AF192135.1/86-206   UGCGAGAGCGUCAGUA
AY161882.1/12-127   UGCGAGAGCGUCAGUA
AJ288981.1/736-854  UGCGAGAGCGUCAGUA
AF492624.1/73-186   UGCGAGAGCGUCAGUA
#=GC SS_cons        <<<....>>>>>....
//
# STOCKHOLM 1.0

#=GF AC  RF00175:2
#=GF ID  Retroviral_psi:2

AJ293865.1/46-165   GGACUCGGCUUGCU..GAGUGCACGCAGCAAGAGGCGAGGCGGCCGGCGACUGG
AF414006.1/702-819  GGACUCGGCUUGCUG.AGGUGCACACAGCAAGAGGCGA.GAG..CGGUGACUGG
AY161883.1/12-129   GGACUCGGCUUGCUGAAGGUGCACACAGCAAGAGGCGA.GAG..CGGCGACUGG
AF049494.1/241-357  GGACUCGGCUUGCUG.AAGCGCGCACAGCAAGAGGCGA.GGGG.CGGCGACUGG
AY118159.1/240-356  GGACUCGGCUUGCUG.AAGCGCGCACGGCAAGAGGCGA.GGGG.CAGCGAACGG
AF443075.1/69-186   GGACUCGGCUUGCUG.AAGCGCGCACGGCAAGAGGCGA.GGG..GGGCGACUGG
AY173957.1/62-175   GGACUCGGCUUGCUG.AAGUGCACACGGCAAGAGGCGA.GAG..GGGCGACUGG
AF443111.1/69-188   GGGCUCGGCUUGCUG.AAGUGCACUCGGCAAGAGGCGA.GAG...GGCGACUGG
U88822.1/208-327    GGACUCGGCUUGCUGAAAGCGCGCUCGGCAAGAGGCGA.GGGG.CAGCGACUGG
AF042104.1/28-144   GGACUCGGCUUGCUG.AAGCGCGCACGGCAAGAGGCGA.GGGG.UGGCGACUGG
#=GC SS_cons        ...<<<<.<<<<<<<..........>>>>>>>...>>>.>.....<<<<<<<..

AJ293865.1/46-165   UGAGUACGCC...AA.AAAUUUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAUG
AF414006.1/702-819  UGAGUACGCC....UAAAGAUUUUUGACUAACGGAGGCUAGAAGGAGAGAGAUG
AY161883.1/12-129   UGGGUACCCCA...UAA...AUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAUG
AF049494.1/241-357  UGAGUACGCCG...AUA...UUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAUG
AY118159.1/240-356  UGAGUACGCU....AAAAA..UUUUGACUAGCGGUGGCUAGAAGGAGAGAGAUG
AF443075.1/69-186   UGAGUACGCC....AAUUUUUAUUUGACUAGCGGAGGCUAGAAGGAGAGAGAUG
AY173957.1/62-175   UGAGUACGCC........AAAUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAUG
AF443111.1/69-188   CGAGUACGCCAAA.AAAAUUUUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAUG
U88822.1/208-327    UGAGUACGCU....GAAAAUUUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAUG
AF042104.1/28-144   UGAGUACGCCA...AAA...AUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAUG
#=GC SS_cons        ..>>>.>>>>.................<<<<<....>>>>>.............

AJ293865.1/46-165   GGUGCGAGAGCG.UCAGUA
AF414006.1/702-819  GGUGCGAGAGCG.UCAGUA
AY161883.1/12-129   GGUGCGAGAGCGUUCAGUA
AF049494.1/241-357  GGUGCGAGAGCG.UCGGUA
AY118159.1/240-356  GGUGCGAGAGCG.UCAAUA
AF443075.1/69-186   GGUGCGAGAGCG.UCAAUA
AY173957.1/62-175   GGUGCGAGAGCG.UCAGUA
AF443111.1/69-188   GGUGCGAGAGCG.UCAAUA
U88822.1/208-327    GGUGCGAGAGCG.UCAGUA
AF042104.1/28-144   GGUGCGAGAGCG.UCAAUC
#=GC SS_cons        <<<<<....>>>.>>....
//
# STOCKHOLM 1.0

#=GF AC  RF00175:3
#=GF ID  Retroviral_psi:3

AF193253.1/70-186   GGACUCGGCUUGCUG.AAGCGCGCAAGGCAAGAGGCGA.G..GGGUAGCGACUG
AB097869.1/693-813  GGACUCGGCUUGCUG.AAGCGCGCACAGCAAGAGGCGA.GAGGAGCGGCGACUG
AF164485.1/717-830  GGACUCGGCUUGCUG.CGGUGCACACAGCAAGAGGCGA.G..AC.GGGCGACUG
AB097865.1/71-189   GGACUCGGCUUGCUG.AAGCGCGCGCAGCAAGAGGCGA.G..AG.GGGCGACUG
AF082394.1/14-133   GGACUCGGCUUGCUG.AAGUGCACACGGCAAGAGGCGAGG..GG.CGGCGACUG
AY162224.1/704-822  GGACUCGGCUUGCUG.AAGUGCACUCGGCAAGAGGCGA.G..GG.GGGCGACUG
AF061640.1/97-212   GGACUCGGCUUGCUG.AGGUGCACGCAGCAAGAGGCGA.G..AG.CGGCGACUG
AF423756.1/144-260  GGACUCGGCUUGCUGAAGGUGCACACAGCAAGAGGCGA.G..AG.CGGCUACUG
AY173957.1/62-175   GGACUCGGCUUGCUG.AAGUGCACACGGCAAGAGGCGA.G..AG.GGGCGACUG
AF042105.1/49-165   GGACUCGGCUUGCUG.AAGCGCGCACAGCAAGAGGCGA.G..GGGCGGCGACUG
#=GC SS_cons        ...<<<<.<<<<<<<..........>>>>>>>...>>>.>......<<<<<<<.

AF193253.1/70-186   GUGAGUACGCU.AA..AA..UUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAUG
AB097869.1/693-813  GUGAGUACGCC.AA..AAAAUUUUUGACUAGCGAAGGCUAGAAGGAGAGAGAUG
AF164485.1/717-830  GUGAGUACGCC.AA......AUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAUG
AB097865.1/71-189   GUGAGUACGCCAAA..AAAUUUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAUG
AF082394.1/14-133   GUGAGUACGCC..AAAAAUAUUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAUG
AY162224.1/704-822  GUGAGUACGCCAAA..AUUUUUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAUG
AF061640.1/97-212   GUGAGUACGCC.....AAACUUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAUG
AF423756.1/144-260  GUGAGUACGCC.....AUAAAUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAUG
AY173957.1/62-175   GUGAGUACGCC.......AAAUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAUG
AF042105.1/49-165   GUGAGUACGCCAAA..A...AUUUUGACUAGCGGAGGCUAGAAGGAGAAAGAUG
#=GC SS_cons        ...>>>.>>>>................<<<<<....>>>>>.............

AF193253.1/70-186   GGUGCGAGAGCGUCAGUA
AB097869.1/693-813  GGUGCGAGAGCGUCAGUA
AF164485.1/717-830  GGUGCGAGAGCUUCAGUA
AB097865.1/71-189   GGUGCGAGAGCGUCAGUA
AF082394.1/14-133   GGUGCGAGAGCGUCAAUA
AY162224.1/704-822  GGUGCGAGAGCGUCAAUA
AF061640.1/97-212   GGUGCGAGAGCGUCAGUA
AF423756.1/144-260  GGUGCGAGAGCGUCAGUA
AY173957.1/62-175   GGUGCGAGAGCGUCAGUA
AF042105.1/49-165   GGUGCGAGAGCGUCAGUA
#=GC SS_cons        <<<<<....>>>>>....
//
# STOCKHOLM 1.0

#=GF AC  RF00175:4
#=GF ID  Retroviral_psi:4

AF042100.1/691-809  GGACUCGGCUUGCUG.AAGCGCGCACGGCAAGAGGCGA.G..GGGCGGCGACUG
U88826.1/62-176     GGACUCGGCUUGCUG.AAGUGCACACAGCAAGAGGCGA.G..AG.CGGCGACUG
AB097869.1/693-813  GGACUCGGCUUGCUG.AAGCGCGCACAGCAAGAGGCGA.GAGGAGCGGCGACUG
AF110970.1/83-200   GGACUCGGCUUGCUG.AAGUGCACUCGGCAAGAGGCGA.G..AG.GGGCGGCUG
AF538302.1/716-833  GGACUCGGCUUGCUG.AAGCGCGCACGGCAAGAGGCGAGG..GG.CGGCGACUG
M17451.1/208-324    GGACUCGGCUUGCUG.AAGCGCGCGCGGCAAGAGGCGA.G..GGGCGGCGAACG
AJ291719.1/695-813  GGACUCGGCUUGCUG.AGGUGCACACAGCAAGAGGCGA.G..AG.CGGCGGCUG
AY158534.1/41-159   GGACUCGGCUUGCUGAAAGUGCACUCGGCAAGAGGCGA.G..AG.CGGCGGCUG
AY161882.1/12-127   GGACUCGGCUUGCUG.AAGGGCACACAGCAAGAGGCGA.G..AG.CGGCGACUG
U88822.1/208-327    GGACUCGGCUUGCUGAAAGCGCGCUCGGCAAGAGGCGA.G..GGGCAGCGACUG
#=GC SS_cons        ...<<<<.<<<<<<<..........>>>>>>>...>>>.>......<<<<<<<.

AF042100.1/691-809  GUGAGUACGCC.AAAAAAUUUUUGACUAGCGGA.GGCUAGAGGAGGAGAGAUGG
U88826.1/62-176     GUGAGUACGCC.....AUUUUUUGACUAGCGGAGGGCUAGAAGGAGAGAGGUGG
AB097869.1/693-813  GUGAGUACGCC.AAAAAAUUUUUGACUAGCGAA.GGCUAGAAGGAGAGAGAUGG
AF110970.1/83-200   GUGAGUACGCC.AAAUUUGAUUUGACUAGCGGA.GGCUAGAAGGAGAGAGAUGG
AF538302.1/716-833  GUGAGUACGCCAAAA..UUUUUUGACUAGCGGA.UGCUAGAAGAAAAAAGAUGG
M17451.1/208-324    GUGAGUACGCCGAAA...AUUUUGACUAGCGGA.GGCUAGAAGGAGAGAGAUGG
AJ291719.1/695-813  GUGAGUACGCCAAAAAAUUUUUUGACUAGCAGA.GGCUAAAAGGAGAGAGAUGG
AY158534.1/41-159   GUGAGUACGCC.AAUUUUUAUUUGACUAGCGGA.GGCUAGAAGGAGAGAGAUGG
AY161882.1/12-127   GAGAGUACGCCAUAA...AUCUUGACUAGCGGA.GGCUAGAAGGAGAGAGAUGG
U88822.1/208-327    GUGAGUACGCU.GAAAAUUUUUUGACUAGCGGA.GGCUAGAAGGAGAGAGAUGG
#=GC SS_cons        ...>>>.>>>>..............<<<<<.....>>>>>.............<

AF042100.1/691-809  GUGCGAGAGCGUCAGUA
U88826.1/62-176     GUGCGAGAGCGUCAGUA
AB097869.1/693-813  GUGCGAGAGCGUCAGUA
AF110970.1/83-200   GUGCGAGAGCGUCAAUC
AF538302.1/716-833  GUGCGAGAGCGUCGGUA
M17451.1/208-324    GUGCGAGAGCGUCAGUA
AJ291719.1/695-813  GUGCCAGAGCGUCAAUA
AY158534.1/41-159   GUGCGAGAGCGUCAGUA
AY161882.1/12-127   GUGCGAGAGCGUCAGUA
U88822.1/208-327    GUGCGAGAGCGUCAGUA
#=GC SS_cons        <<<<....>>>>>....
//
# STOCKHOLM 1.0

#=GF AC  RF00031:0
#=GF ID  SECIS:0

AE003628.2/106178-106240  UUCAACUU..AUGAGGAUUAUUUCU.UAAA.GGCCUCU...GGC.U..
Y11109.1/1272-1330        GUUUCUCA..GUGAAGGCUACAGAU.UAAA..CCUCU....GGC....
L28111.1/1299-1365        GUGUUUGCAAAUGACGACCGAUUUU.GAAAUGGUCUCA.CGGCC.A.A
AF241527.2/359-424        GCCGCUUC..AUGACAGGAAGGACU.GAAA.UGUCUUA...GAC.CUG
AF136399.1/1808-1868      GUCAGAUG..AUGAUGGCCUGGGCA.GAAA..CCCCAUG.UGGG.C..
AF195142.1/461-524        GUCACCGA..AUGAUCUGCUCUGGU.CAAA.UCCUUCU...AUG.C.C
AF288740.1/1291-1357      UUUGCAUU.AAUGAGGAUUACACAG.AAAA.CCUUUGU..UAAGGA.C
AF333036.1/2190-2249      CAUGCGUC.CAUGAAGUCACUGGCC.UCAA.GCCCAA....GUGGU..
AF093774.1/5851-5916      GUGUGCGG..AUGAUAACUACUGAC.GAAAGAGUCAUC...GAC.CUC
U43286.1/2054-2120        CUCUGUUA..AUGACGUCUCUCCCUCUAAA.CCCCAUU.AAGGA.C..
#=GC SS_cons              <<<<<......<<<<<<<<<<<<<<.......<<<......>>>....

AE003628.2/106178-106240  CGGAAAUAGUCUGAA...CCUUAUUGUA
Y11109.1/1272-1330        .CUCUGGAGCCAGAU..GCAUU.GAAAC
L28111.1/1299-1365        AAACUCGUGUCCGAC...AUC..AACCC
AF241527.2/359-424        UGGUCUUUCCUCGAU.GUUCCU.GCGGC
AF136399.1/1808-1868      .CGCCCAGGUUUGAA...CCC..CUGGC
AF195142.1/461-524        AGCCAGGGUGGUGAU.GACCC..GUGAC
AF288740.1/1291-1357      UUGUGUAGAUCUGAU..AAUUG.GCAAA
AF333036.1/2190-2249      .GGGCAGUGACAGAA...GA...GCUGC
AF093774.1/5851-5916      AGUUAGUGGUUGGAU...GUAGUCACAU
U43286.1/2054-2120        .UGGGAGAGGCAGAGCAAGCCU.CAGAG
#=GC SS_cons              .>>>>>>>>>>>>>>........>>>>>
//
# STOCKHOLM 1.0

#=GF AC  RF00031:1
#=GF ID  SECIS:1

AY060611.1/560-627    GUGGCGCU..UAUGACGCAGUUGUCU.UAAA.CUCGAAC..UCGAGC..GGG
Y11109.1/927-987      UGUUUAUU..AAUGACGGCUACAGAU.UAAA..CCUUU....AGC....CUC
Y11111.1/1260-1324    GUGUCUCU...GUGAAGUUCGGUUUU.UAAA.AGGGUCA...UCC.AGAAAA
AF322071.1/1577-1642  AUGUGGUCUUUAUGAAGGCAGGUGCA.GAAA.CUAUGCA...CUAGU..GGU
X84742.1/5239-5302    GUGUCUCU...AUGAAGGAGGGGCCC.GAA..GCCCUU.G.UGGG.C..GGG
M63574.1/1465-1528    GUUACAUU..GAUGAGAACAGAAACA.UAAA..CUAUGA.CCUAGG...GGU
AF166127.1/1919-1981  GCCGGAUG...AUGACGACCUGGGUG.GAAACCUACCCU...GUGG..GCAC
U43286.1/2054-2120    CUCUGUUA...AUGACGUCUCUCCCUCUAAA.CCCCAUU.AAGGA.C..UGG
X76008.1/2709-2772    CUGGCACC..CAUGACAGUCUGCCUA.AAAA.CCAGCC....CUGGU..GGG
U61947.2/4246-4309    GAGGCAGCUUUGUGACGACCUUUGGC.UAAA.CUCCAUCG.UGAG.C..GCC
#=GC SS_cons          <<<<<.......<<<<<<<<<<<<<<.......<<<......>>>....>>>

AY060611.1/560-627    CAAUUGCUGAU.UACGAU..UAACCAC
Y11109.1/927-987      UGGAGCCAGAU..GCAUUC...AAACA
Y11111.1/1260-1324    CCGACACUGAU..GUUU.C..CGACAC
AF322071.1/1577-1642  GUCUGUCUGAU..GUUUG....GCCAU
X84742.1/5239-5302    CCUCCCCUGAG...CCCG.UCUGUGGU
M63574.1/1465-1528    UUCUGUUGGAU..AGCU.C...GUAAU
AF166127.1/1919-1981  CCAUGUCCGAG...CCC.C...CUGGC
U43286.1/2054-2120    GAGAGGCAGAGCAAGCCU....CAGAG
X76008.1/2709-2772    GCAGACUCGAG.AACCUG....GCGUG
U61947.2/4246-4309    UCUGGUCUGAU...GC......GCCUC
#=GC SS_cons          >>>>>>>>>>>...........>>>>>
//
# STOCKHOLM 1.0

#=GF AC  RF00031:2
#=GF ID  SECIS:2

AE003628.2/106178-106240  UUCAACUU...AUGAGGAUUAUUUCUUAAA.GGCCUCU...GGC..U.
Y11111.1/1260-1324        GUGUCUCU...GUGAAGUUCGGUUUUUAAA.AGGGUCA...UCC..A.
Y11273.1/1139-1211        UAUUUCUU..UGUGAUGACCGAUUUUGAAA.UGGGUUU..CUCUAAUG
X84742.1/5239-5302        GUGUCUCU...AUGAAGGAGGGGCCCGAA..GCCCUU.G.UGGG..C.
AB030643.1/4176-4241      CCGGCACU..CAUGAAGGUCUGCCUGAAAA.CCAGCCUG..CUGG.U.
X57999.1/1526-1586        AUAUUUGU.UUAUGAUGGUCACAGUGUAAA..GUUCA....CAC....
S79854.1/1605-1666        CACUGCUG...AUGACGAACUAUCUCUAA.CUGGUCUUG..ACC..A.
AC000078.2/21139-21077    GCCAGAUG...AUGACGACCUGGGUGGAAACCUACCCU...GUGG...
U67853.1/375-442          GACGCUUC...AUGACAGGAAGGACUGAAA.UGUCUCU.UGGACG.C.
U61947.2/4246-4309        GAGGCAGCUUUGUGACGACCUUUGGCUAAA.CUCCAUCG.UGAG..C.
#=GC SS_cons              <<<<<.......<<<<<<<<<<<<<<......<<<......>>>....

AE003628.2/106178-106240  ....CGGAAAUAGUCUGAA..CCUU...AUUGUA
Y11111.1/1260-1324        ...GAAAACCGACACUGAU.GUUU.C..CGACAC
Y11273.1/1139-1211        CCAGGAAAUCGUGUCUGAU..GUUG..UCAAGUA
X84742.1/5239-5302        .....GGGCCUCCCCUGAG..CCCG.UCUGUGGU
AB030643.1/4176-4241      .....GGGGCAGUCCUGAGGACCUG....GCGUG
X57999.1/1526-1586        .....AGCUGUGACUUGAU..UUUU...AAAAAU
S79854.1/1605-1666        ....CGAGCUAGUUCUGAA..UU.G....CAGGG
AC000078.2/21139-21077    ....GCACCCAUGUCCGAG..CCC.C...CUGGC
U67853.1/375-442          ...CUGGUCCUUCCUUGAU.GUUCUC...ACGGC
U61947.2/4246-4309        .....GCCUCUGGUCUGAU..GC......GCCUC
#=GC SS_cons              .....>>>>>>>>>>>>>>..........>>>>>
//
# STOCKHOLM 1.0

#=GF AC  RF00031:3
#=GF ID  SECIS:3

AY060611.1/560-627         GUGGCGCU.UAUGACGCAGUUGUCUUAAACUCGAAC.UCGAGC...G
AL645723.11/192421-192359  UAUUUGUG.UAUGAUGGUCACAGUGUAAA.GUUCC...CAC.....A
AF241527.2/359-424         GCCGCUUC..AUGACAGGAAGGACUGAAAUGUCUUA..GAC.CUGUG
AF136399.1/1808-1868       GUCAGAUG..AUGAUGGCCUGGGCAGAAA.CCCCAUGUGGG.C...C
AF288740.1/1291-1357       UUUGCAUU.AAUGAGGAUUACACAGAAAACCUUUGU.UAAGGA.CUU
AC002327.1/156204-156268   CUCAGCAG.GAUGAUGAGAAGGGCUGAAAUGCUGCC.AAAC.C..AG
BC003127.1/865-928         GUCACUGC..AUGAUCCGCUCUGGUCAAACCCUUCC..AGG.C.CAG
X53463.1/847-903           UUCACAGA..AUGAUGGCACCUUCCUAA..ACCCU...CAU.....G
AB017534.1/661-726         CCCGGUGCCUAUGACGGUCUGUCUGAAAACCAGCCC..CUGGU...G
AF053984.1/1951-2017       GAUGCGUC.CAUGAAGUCACCAGCCCCAAGCCCCUC..GUGGU...G
#=GC SS_cons               <<<<<......<<<<<<<<<<<<<<.....<<<.....>>>.....>

AY060611.1/560-627         GGCAAUUGCUGAUUACGAU...UAACCAC
AL645723.11/192421-192359  GCUGUGACUUGAU..UUUU.AAAAAUGUC
AF241527.2/359-424         GUCUUUCCUCGAUGUUCCU.....GCGGC
AF136399.1/1808-1868       GCCCAGGUUUGAA..CCC......CUGGC
AF288740.1/1291-1357       GUGUAGAUCUGAU.AAUUG.....GCAAA
AC002327.1/156204-156268   GUCCUUUUCUGAU.GGU.G....GCUGGG
BC003127.1/865-928         CCAGAGUGGGGAU.GGUCU.....GUGAC
X53463.1/847-903           GGUGGUGUCUGAGAGGC.......GUGAA
AB017534.1/661-726         GGGCAGACCUGAGAACCUG.....GCGUG
AF053984.1/1951-2017       GGUGGUGAUGGAA.CCGU.C.AAAGCAGU
#=GC SS_cons               >>>>>>>>>>>>>...........>>>>>
//
# STOCKHOLM 1.0

#=GF AC  RF00031:4
#=GF ID  SECIS:4

AC092237.1/57223-57161     CAUUCAACUUAUGAGGAUUAUUUCU.UAAAGGCCUCU...GGC.U..
AY119185.1/838-902         GAGCC.CU..AUGAUCGAUGAUUGG.CAAAUCCUCUCG..AGG.A..
Y11111.1/1260-1324         GUGUCUCU..GUGAAGUUCGGUUUU.UAAAAGGGUCA...UCC.A.G
AF125575.1/5781-5843       GUGUGUUU..AUGAAGAGCACUAAC.AAAAGAGUAAU.UGACU.C..
AL645723.11/192421-192359  UAUUUGUG.UAUGAUGGUCACAGUG.UAAA.GUUCC....CAC....
AB030643.1/4176-4241       CCGGCACU.CAUGAAGGUCUGCCUG.AAAACCAGCCUG..CUGGU..
X12367.1/703-764           GUUUUUCC..AUGACGGUGUUUCCUCUAAA.UUUAC....AUG....
BC003127.1/865-928         GUCACUGC..AUGAUCCGCUCUGGU.CAAACCCUUCC...AGG.C.C
U67171.1/375-442           GACGCUUC..AUGAUAGGAAGGACU.GAAAAGUCUU.GUGGAC.ACC
AF053984.1/1951-2017       GAUGCGUC.CAUGAAGUCACCAGCC.CCAAGCCCCUC...GUGGU..
#=GC SS_cons               <<<<<......<<<<<<<<<<<<<<......<<<......>>>....

AC092237.1/57223-57161     CGGAAAUAGUCUGAA..CCU......UAUUG
AY119185.1/838-902         ACCGAUCGUUGAGAA.CCCCU...UUGCCUU
Y11111.1/1260-1324         AAAACCGACACUGAU.GUUU.C...CGACAC
AF125575.1/5781-5843       AGUUGGUGUUCAGAU..GCU......CUCAC
AL645723.11/192421-192359  .AGCUGUGACUUGAU..UUUU.AAAAAUGUC
AB030643.1/4176-4241       .GGGGCAGUCCUGAGGACCUG.....GCGUG
X12367.1/703-764           .GAGAAACACCUGAUUUCCAG....AAAAAU
BC003127.1/865-928         AGCCAGAGUGGGGAU.GGUCU.....GUGAC
U67171.1/375-442           UGGUCUUUCCCUGAU.GUUCUC....GUGGC
AF053984.1/1951-2017       .GGGUGGUGAUGGAA.CCGU.C.AAAGCAGU
#=GC SS_cons               .>>>>>>>>>>>>>>...........>>>>>
//
# STOCKHOLM 1.0

#=GF AC  RF00169:0
#=GF ID  SRP_bact:0

AE012781.1/271-172        GAGUAAGU.CCUAUACAGCAUUCUCU...UGCCCA.ACCAUGUCAGGU
AJ011025.1/3477-3397      ..CUCGGC....CUUUCGCGGUUUUAA..CGCCCAAACCUGGUCAGGA
AF368293.1/121-224        AGAUUUCGGUCCUAU.GCAAUAUGA...ACCCAUGAACCAUGUCAGGU
AE006305.1/11176-11252    .............GGAGCAAUAAGUUU..CUUACGAAGCGUGUCAGGA
AE002112.1/7386-7290      AAUAUAUA.UGUCAUUACAAUAUUAA...GUAGCGAACCUUGUCAGGC
AP003006.2/282610-282707  GGAGGUUG..GUGGUGGACGAUCC....ACUCGCCAACCGGGUCAGGU
AE008680.1/732-813        ....GCUA..GUAGUGGGCAUUGU....ACCUGUUUAGUCGGUCAGGU
AL139074.2/66646-66744    UUCUUAGA..CCUGU.GCAAUGCUAU..UUUUAAGCACCGCUUCAGGG
AE001151.1/4236-4333      CCUAGGAC....CCGUACUAUCAAGU..AUUGCUGAAUCCCGUCAGGA
AE001187.1/2891-2802      ........CCGGGGCCGCCCACGAAAUAUCCCCCAAACCCCGCUAGGU
#=GC SS_cons              .<<<<.<<...<<<<.<<<.<<<<<.....<<<<.....<<<.<.<.<

AE012781.1/271-172        CCGGAAGGAAGCAGCAU.CCGGUAAUGUGAGUGCGUGAU...AUAGUC
AJ011025.1/3477-3397      UCGGAAGGUAGCAGCCACAAGG.GAUGCUUGAGGCAGGCGAG......
AF368293.1/121-224        CCUGACGGAAGCAGCAUUAAGU.GGAU.CAUCAUAUGUGCCGUAGGGU
AE006305.1/11176-11252    CCUGACGGUAGCAGCACUAAGU.AUGG..AGCUUAUGUGCUCUUUUU.
AE002112.1/7386-7290      CAGAGAUGGAGCAGCAAU.AGC.AAUAUCUUUUUAUGUGUGAUGACA.
AP003006.2/282610-282707  CCGGAAGGAAGCAGCCCU.AAC.GAGC.CC.GGAACGGGUCAUUGUUC
AE008680.1/732-813        CUGAAAGGAAGCAGCCAG.AGU.GGGA...UUCGAUGGGUCAUUAC..
AL139074.2/66646-66744    UGGGAACACAGCAGAGCA.CUU.GAUU..UUAGUGUGUGCCGCAGUUA
AE001151.1/4236-4333      CUGGAAGGUAGCAGCGGU.AAG.CGAUUUUUUUGAUGAGUACGUAA..
AE001187.1/2891-2802      CCGGAAGGAAGCAACGGU.AGG.GGGACGCUUCGGUGCGCGAUCCGC.
#=GC SS_cons              <<....>>>..>.>>>>...>>.>>.....>>>>>..>>>.>>>>...

AE012781.1/271-172        .AGCUUGCUCUCCU
AJ011025.1/3477-3397      ..............
AF368293.1/121-224        AGCCGAGAUUUAGC
AE006305.1/11176-11252    ..............
AE002112.1/7386-7290      ..UAUAUUAA....
AP003006.2/282610-282707  ..CAGCCUCCCACC
AE008680.1/732-813        ..UAG.........
AL139074.2/66646-66744    ..UCUGGGGAAGGG
AE001151.1/4236-4333      ..GUCUUAGGUUUA
AE001187.1/2891-2802      ..CCCGG.......
#=GC SS_cons              ..>>.>>>>.....
//
# STOCKHOLM 1.0

#=GF AC  RF00169:1
#=GF ID  SRP_bact:1

AL023596.1/21933-22018    .....GGA.CCCCGCG...CGGCGUCUAUCCUGUGAACU.CCCCUAGG
M31831.1/60-156           ......GG.CCCCUACGUGGUGUCAU..CUCGCUGAACUUCCCCCAGG
AP002546.2/147527-147424  GUUGGGGG..CCUUUUAAGAGAAGGAA..CCUGCGAAUC.GGGUCAGG
D90912.1/112591-112684    GGCUCGGA....CUCAUGCGAUUACAA..CGCCCAAAUC.UUGUCAGG
D11418.1/118-220          CGUUUGGG.UCCUGC.GCAAUGGGA...AUUCAUGAACC.AUGUCAGG
U39706.1/5918-5836        ......AG.AACCAUCACAUCAUUA....GAGUCGAAUC.AUGUCAGG
AE010530.1/10602-10691    ..GCCCUU.AGGGGAUAUGAUAUAUU..AUUGUCGAACC.GUGUCAGA
AE003940.1/637-734        CUGCCGGU..CCCUC.GCAACGCUA...GAUCGAAAACC.CCGCCAGG
AE001151.1/4236-4333      CCUAGGAC....CCGUACUAUCAAGU..AUUGCUGAAUC.CCGUCAGG
AE001187.1/2891-2802      ........CCGGGGCCGCCCACGAAAUAUCCCCCAAACC.CCGCUAGG
#=GC SS_cons              .<<<<.<<...<<<<.<<<.<<<<<.....<<<<......<<<.<.<.

AL023596.1/21933-22018    GCCGGAAGGCAGCAAGGGUCAAUGGGC..UCUGUCGGGUGCGCGGGG.
M31831.1/60-156           ACCGGAAGGUAGCAAGGGU.AGGUGGGCUCUGGCAGGUGCGUGAGGGG
AP002546.2/147527-147424  ACUGGAAGGUAGCAGCCCUAAGGAGAGUUUUCUUUUGCU.AAAAGAAU
D90912.1/112591-112684    ACCGGAAGGUAGCAGCAAUAAGGGAUGCUUGUGGUAGGCGUGAAC...
D11418.1/118-220          UCCGGAAGGAAGCAGCAUUAAGUGAAA.CCUCUCAUGUGCCGCAGGUU
U39706.1/5918-5836        CCAGAAAUGGAGCAGCAUUAAGACUUG..UCAGUGAGUGUGAUGGUU.
AE010530.1/10602-10691    UCUGGAAGGAAGCAGCACUAAGAUUUA.UAGUAUAUGCAUGUCUUCCU
AE003940.1/637-734        GCCGGAAGGCAGCAACGGU.AUUGAUU..GAUGCGGGUGCCGAGAUCA
AE001151.1/4236-4333      ACUGGAAGGUAGCAGCGGU.AAGCGAUUUUUUUGAUGAGUACGUAA..
AE001187.1/2891-2802      UCCGGAAGGAAGCAACGGU.AGGGGGACGCUUCGGUGCGCGAUCCGC.
#=GC SS_cons              <<<....>>>..>.>>>>...>>>>.....>>>>>..>>>.>>>>...

AL023596.1/21933-22018    ..UCC.........
M31831.1/60-156           ..UCUUCACGUUU.
AP002546.2/147527-147424  GUUCUCCAACUUAC
D90912.1/112591-112684    ..UCCGGGCU....
D11418.1/118-220          GCCUUGGGCCGAGC
U39706.1/5918-5836        ..UU..........
AE010530.1/10602-10691    A.............
AE003940.1/637-734        ..ACCGGUGGGGCC
AE001151.1/4236-4333      ..GUCUUAGGUUUA
AE001187.1/2891-2802      ..CCCGG.......
#=GC SS_cons              ..>>.>>>>.....
//
# STOCKHOLM 1.0

#=GF AC  RF00169:2
#=GF ID  SRP_bact:2

M31831.1/60-156           ......GG.CCCCUACGUGGUGUCAU.CUCGCUGAACUUCCCCCAGGA
AP002546.2/147527-147424  GUUGGGGG..CCUUUUAAGAGAAGGAA.CCUGCGAAUC.GGGUCAGGA
AE012781.1/271-172        GAGUAAGU.CCUAUACAGCAUUCUCU..UGCCCA.ACC.AUGUCAGGU
D90912.1/112591-112684    GGCUCGGA....CUCAUGCGAUUACAA.CGCCCAAAUC.UUGUCAGGA
AF368293.1/121-224        AGAUUUCGGUCCUAU.GCAAUAUGA..ACCCAUGAACC.AUGUCAGGU
AE007319.1/10471-10547    ............GGA.GCAACAGUUC.UG.CGUGAAGC.GGGUCAGGG
X53678.1/99-175           ..........GCCGCGAUAAGAAUA..ACAUCUGAAC..GAGUUAGGA
AE009624.1/3419-3517      GGAGGUUG..GUGGUGGACGAGCC...ACUCGCCAACC.GGGUCAGGU
U32795.1/4504-4603        UUCUCGGU..CUCUC.GCAACGGUG..UCUGGUUUACU.CGGUCAGGU
AE004188.1/3986-4083      CCCUGGUC..CUCCC.GCAACACUA..GUUCGUGAACC.UGGUCAGAU
#=GC SS_cons              .<<<<.<<...<<<<.<<<.<<<<<....<<<<......<<<.<.<.<

M31831.1/60-156           CCGGAAGGUAGCAAGGGU.AGG.UGGGCUCUGGCAGGUGCGUGAGGGG
AP002546.2/147527-147424  CUGGAAGGUAGCAGCCCUAAGG.AGAGUUUUCUUUUGCU.AAAAGAAU
AE012781.1/271-172        CCGGAAGGAAGCAGCAU.CCGGUAAUGUGAGUGCGUGAU...AUAGUC
D90912.1/112591-112684    CCGGAAGGUAGCAGCAAUAAGG.GAUGCUUGUGGUAGGCGUGAAC...
AF368293.1/121-224        CCUGACGGAAGCAGCAUUAAGU.GGAU.CAUCAUAUGUGCCGUAGGGU
AE007319.1/10471-10547    GAGGAAUCCAGCAGCCCUAAGC.GAUU.UGAAUUGUGUGC.UCUUUUU
X53678.1/99-175           CCGGAAGGUAGCAGCUAUAAGG.AAAA..GUGUUCUGUAUUGCGGU..
AE009624.1/3419-3517      CCGGAAGGAAGCAGCCCU.AAC.GAGC.CACGGCACGGGUCAUCGUGC
U32795.1/4504-4603        CCGGAAGGAAGCAGCCAA.AGU.CGGA.AUUACUGUGUGCCGAGAAGA
AE004188.1/3986-4083      CCGGAAGGAAGCAGCCAC.AGC.GGAU..GAUGUGUGUGCCGGGAUGU
#=GC SS_cons              <<....>>>..>.>>>>...>>.>>.....>>>>>..>>>.>>>>...

M31831.1/60-156           ..UCUUCACGUUU.
AP002546.2/147527-147424  GUUCUCCAACUUAC
AE012781.1/271-172        .AGCUUGCUCUCCU
D90912.1/112591-112684    ..UCCGGGCU....
AF368293.1/121-224        AGCCGAGAUUUAGC
AE007319.1/10471-10547    ..............
X53678.1/99-175           ..............
AE009624.1/3419-3517      ..CAGCCUCCCACC
U32795.1/4504-4603        .AGCUGGGAAGGUU
AE004188.1/3986-4083      ..GGCUGGGGUCUC
#=GC SS_cons              ..>>.>>>>.....
//
# STOCKHOLM 1.0

#=GF AC  RF00169:3
#=GF ID  SRP_bact:3

AE000759.1/8335-8411      ..........GCCCUGCGGCGGGAC..AGGGUGAACUCCCCCAGGCCC
AP003584.1/338551-338455  GACCUGGA...UCUAUGCGACUGCAA.CGCCUAAACCUUGUCAGGACC
D11419.1/119-221          CGUCCGGGUCCUGC.GCAAUGGGA..AUCCAUGAACCAUGUCAGGUCC
AE006489.1/4483-4560      ...........GGA.GCAACACUUG.UG.CGUGAAGUGGGUCAGGGGA
AE002112.1/7386-7290      AAUAUAUAUGUCAUUACAAUAUUAA..GUAGCGAACCUUGUCAGGCCA
AL591782.1/259929-260027  GGAGGUUG.GUGGUGGACGAGCC...ACUCGCCAACCGGGUCAGGUCC
AF203881.1/14955-14875    .....GUC..GGGCGGACGGUGC...UGUCGCCAACCCGGUCAGGUCC
AL162755.2/146999-146906  GGCGGGUC.UCCCC.GCAUGGCAA..AUCGGAACACCGGGUCAGGGGC
AE014122.1/13296-13200    UGUUAGUC..CUAA.ACACUGUUA..AAUUGAAUAAUUGGUCAGAUCU
M31830.1/30-129           CUAUUGGUCCCCUC.GC.GACGAUA.GAUUGUGAACCCCGUCAGGCCC
#=GC SS_cons              .<<<<.<<..<<<<.<<<.<<<<<....<<<<.....<<<.<.<.<<<

AE000759.1/8335-8411      GAAAGGGAGCAAGGGUAAGCCCGC.CGUCCCGUG.CGCAGGGU.....
AP003584.1/338551-338455  GGAAGGUAGCAGCAACACAGGAUGCUUGUGGUAG.GCGUAGUC.....
D11419.1/119-221          GGAAGGAAGCAGCAUUAAGUGGAC.ACCCCCAUG.UGCCGCAGGGUUA
AE006489.1/4483-4560      GGAAUCCAGCAGCCCUAAGCGAUUUUCGGGUGUG.UGC.UCUUUUU..
AE002112.1/7386-7290      GAGAUGGAGCAGCAAU.AGCAAUAUCUUUUUAUG.UGUGAUGACA...
AL591782.1/259929-260027  GGAAGGAAGCAGCCCU.AACGAGC.CCCGGCACG.GGUCAUCGUGC..
AF203881.1/14955-14875    GGAAGGAAGCAGCCGU.AACGAAU..UUUUAUCG.GGUCGUUCC....
AL162755.2/146999-146906  GGAAGCCAGCAGCCCA.CUCCGGU...GCGCCAG.UGCCGGGGGUUU.
AE014122.1/13296-13200    GGAAAGAAGCAGCCAA.AUCAAUC..GAUACAGG.UGUUUUGAUAU..
M31830.1/30-129           GGAAGGGAGCAGCGGU.AGCAGUU...GAUGCGGGCGCCGGGGUGUG.
#=GC SS_cons              ....>>>..>.>>>>...>>>>.....>>>>>...>>>.>>>>.....

AE000759.1/8335-8411      ............
AP003584.1/338551-338455  UCCGGGUC.GCC
D11419.1/119-221          CCUGGACUGAGC
AE006489.1/4483-4560      ............
AE002112.1/7386-7290      UAUAUUAA....
AL591782.1/259929-260027  CAGCCUCCCACC
AF203881.1/14955-14875    GGC.........
AL162755.2/146999-146906  GGCCCGCC....
AE014122.1/13296-13200    AGCUAACAGAAU
M31830.1/30-129           GCUCUUAGAGUC
#=GC SS_cons              >>.>>>>.....
//
# STOCKHOLM 1.0

#=GF AC  RF00169:4
#=GF ID  SRP_bact:4

AE012781.1/271-172        GAGUAAGU.CCUAUACAGCAUUCUCU...UGCCCA.ACCAUGUCAGGU
AP003584.1/338551-338455  GACCUGGA....UCUAUGCGACUGCAA..CGCCUAAACCUUGUCAGGA
AF269814.1/2627-2730      AGAUUUCGGUCCUAU.GCAAUAUGA...ACCCAUGAACCAUGUCAGGU
AE007319.1/10471-10547    ............GGA.GCAACAGUUC..UG.CGUGAAGCGGGUCAGGG
AE010530.1/10602-10691    ..GCCCUU.AGGGGAUAUGAUAUAUU..AUUGUCGAACCGUGUCAGAU
U22036.1/386-480          GAGAUCGG....CGCGGACGGAGU....CCUCGCCAACCUGGUCAGGG
AF203881.1/14955-14875    .....GUC...GGGCGGACGGUGC....UGUCGCCAACCCGGUCAGGU
AF482014.1/12-103         .GCGGGUC..UCCCC.GCAUGGCAA...AUCGGAACACCGGGUCAGGG
AJ414155.1/123558-123461  UGUUGGUU..CUCCC.GCAACACUA...ACUUGUGAACUCGGUCAGGU
AE001187.1/2891-2802      ........CCGGGGCCGCCCACGAAAUAUCCCCCAAACCCCGCUAGGU
#=GC SS_cons              .<<<<.<<...<<<<.<<<.<<<<<.....<<<<.....<<<.<.<.<

AE012781.1/271-172        CCGGAAGGAAGCAGCAU.CCGGUAAUGUGAGUGCGUGAU...AUAGUC
AP003584.1/338551-338455  CCGGAAGGUAGCAGCAACACAG.GAUGCUUGUGGUAGGCGUAGUC...
AF269814.1/2627-2730      CCUGACGGAAGCAGCAUUAAGU.GGAU.CCUCAUAUGUGCCGUAGGGU
AE007319.1/10471-10547    GAGGAAUCCAGCAGCCCUAAGC.GAUU.UGAAUUGUGUGC.UCUUUUU
AE010530.1/10602-10691    CUGGAAGGAAGCAGCACUAAGA.UUUA.UAGUAUAUGCAUGUCUUCCU
U22036.1/386-480          CCGAGAGGCAGCAGCCAC.AAC.GAGA.UCACCUCUGGGUCGUCUG..
AF203881.1/14955-14875    CCGGAAGGAAGCAGCCGU.AAC.GAAU..UUUUAUCGGGUCGUUCC..
AF482014.1/12-103         GCGGAAGCCAGCAGCCCA.CUC.CGAU...GCGCCAGUGCCGGGGGUU
AJ414155.1/123558-123461  CCGGAAGGAAGCAGCCGC.AGC.AGGC..GAGGUGUGUGCCGGGAUGU
AE001187.1/2891-2802      CCGGAAGGAAGCAACGGU.AGG.GGGACGCUUCGGUGCGCGAUCCGC.
#=GC SS_cons              <<....>>>..>.>>>>...>>.>>.....>>>>>..>>>.>>>>...

AE012781.1/271-172        .AGCUUGCUCUCCU
AP003584.1/338551-338455  ..UCCGGGUC.GCC
AF269814.1/2627-2730      AGCCGAGAUUUAGC
AE007319.1/10471-10547    ..............
AE010530.1/10602-10691    A.............
U22036.1/386-480          ..CCGGUCUCCACC
AF203881.1/14955-14875    ..GGC.........
AF482014.1/12-103         U.GGUCCGC.....
AJ414155.1/123558-123461  ..AGCUGGCAGGGC
AE001187.1/2891-2802      ..CCCGG.......
#=GC SS_cons              ..>>.>>>>.....
//
# STOCKHOLM 1.0

#=GF AC  RF00017:0
#=GF ID  SRP_euk_arch:0

M21085.1/9-299            GCC..GGGGGCUCGCCC.UCCCCCGAGCCCCGAAAUGGGCGUAAUGCG
X17237.1/11-302           GCC.GGGGGGUUCGGCG.UCCCCUGUAACCCGAAACCGCCGAUACGCG
AF006750.1/731-1010       GCC.GGAGC.....CU..UGCUCUGUAACCU.....UC.........G
M80262.1/106-378          AGCCGGAGCG..CAU...UGCUCUGUAACCU.....UC.........G
X51658.1/237-504          .............AGC.......UGUAA........UG..........
Z99259.1/7742-7997        .............CGC.......UGUAA........UG..........
AB021174.1/1-299          GCC.GGGCGCGGUGGCGCGCGCCUGUAGUCCC....AGCUACUC..GG
X13914.1/2-302            .CC.GAGCU.AGUUGCGGGAGCUUGUCACCCA....UG........UG
X65991.1/1-302            ....GGCCU.AGCAACGUGGGCCUGUAACCCA....AG........UG
AC005275.1/105500-105803  GUC.GAGCUAAGUAACAUGAGCUUGUAACCCA....UG........UG
#=GC SS_cons              <<<..<<<<..........>>>>.....<<<................>

M21085.1/9-299            GGGGCCAGUAACCCGCACGU.....CGGCC.....GUAGU........
X17237.1/11-302           GGGGCCG..AAGCC.GAGGG....GAGGCC......UGUCA.......
AF006750.1/731-1010       GGGGCU....UUCACCAGCUG....AACAGG..GAGCUGUCU......
M80262.1/106-378          GGGGCU.....GAUCCCGCUU....AGCGGGG.ACGUCUUGGA.....
X51658.1/237-504          ..GCAUU..UUGUCGGAGU....GGUAAAUC....GCCUUCUUGUUGU
Z99259.1/7742-7997        ..GC........UUGGUCG...AAGUGUUUA...GUACUCCCAA....
AB021174.1/1-299          GAGGC.....UGAGGCCGGA..GGAUCGCUU.GAGUCCAGGA......
X13914.1/2-302            GGGGCAU..UGAGGCGGUGU.GGAUGC.UUG...GUGCGGU.......
X65991.1/1-302            GGGGCAU..GUGGGAAAUGG..GACU..UUA...GUUCGGC.......
AC005275.1/105500-105803  GGGACAU..UUAGAUGGUGG..AACAC.UG....GUUCGGG.......
#=GC SS_cons              >>>>>......<<<<<<<<.....<<..<<....<<<<<.........

M21085.1/9-299            ..........................GGUCCAGGGCAG..ACCCGGCC
X17237.1/11-302           ...........................AGCGGGCGGCAG.CGGUUCCA
AF006750.1/731-1010       ........................GGACCAGCAUAGG....GUGCUUG
M80262.1/106-378          ...........................CAAGCGGGG......GUUCUG
X51658.1/237-504          GCGUUCGAGUUCUGGACUCUGCAC......................UG
Z99259.1/7742-7997        ..........................UAGUGCAU.GUU.CGGUGGUCU
AB021174.1/1-299          ........................GUUCUGGGCUG......UCGUGC.
X13914.1/2-302            ..........................UUGUU.GGCCU...GGGCUUGU
X65991.1/1-302            .........................CCAUUG.GAUC....GGAUCCAG
AC005275.1/105500-105803  .........................UCCACG.GGCC....GGUUCUGU
#=GC SS_cons              .............................<<.<<.......<<<<...

M21085.1/9-299            G.ACCCAU.....GACCCC.CG.UCCCGCGGGGCC..GGCG..G.CGC
X17237.1/11-302           GGCACCGCA...GAGUCCU.CG.UCCCGGAGGGCC..GGCG..GUUAU
AF006750.1/731-1010       .C.GGCGUU....GACGUGGUG.CUC.UGCUUGGCUG.UGUGU..CGG
M80262.1/106-378          .U.UGCGUU....GACUUGGUG.UUC.UGCUUGGUUG.CGUGU..CGG
X51658.1/237-504          GGCUA.......CUUUGUUUGUCCUUUCCGAAUUCUGCGGUUGAUGGG
Z99259.1/7742-7997        CGGGUUC.......GAGUCU..CGCUUUCG.AUCCCUCGAUC.UGCCA
AB021174.1/1-299          GCUAUGCC....GAUCGGGUG.UCCGCACUAAGUUC.GGCAU..CAAU
X13914.1/2-302            GAUGUAACC.UUGCUGGCC.UGCCCGUUCCAAGUUG.GUAGU..GGGC
X65991.1/1-302            UGUUAGCUGCUUGCUGGGC.UGCCCAUUCCAAGCCG.AGAGUU.GAGC
AC005275.1/105500-105803  UGUUGGCAUGUUUCUGGGC.UGCCCAGUCCAAGCUG.UGAGU..AAGA
#=GC SS_cons              ...<<.........<<<<<.<..<<..<<<..<<<<.<<<<...<<<<

M21085.1/9-299            GG......AGCC.CCCUCCGGAGGGA.GGGAGGCU.ACCGCCCU...U
X17237.1/11-302           GG......CCGGGCUGCCCGGAGGGG.CUGUCCG...CCAUAUU...A
AF006750.1/731-1010       AGGCCUCCGGGUGCCCCCUUGCAGAAGGGGCGCGCCC.CCUCCG.U.U
M80262.1/106-378          UGUU....GAGGUCGCCACUGUAGAGA.GGCGUUCUC.GCGCCG.U.U
X51658.1/237-504          CG.....UCUCG.GUCUGAGUAAUCG.GCUUUGAGA.UUUCCGUUCUA
Z99259.1/7742-7997        CG.....UCUGUUCGAAGAGUAGUCU.UCGUG.GCA.ACUGGCAGUUA
AB021174.1/1-299          AU.....GGUGACCUCCCGGGAGCGG.GGGACCACC.AGGUUG.CCUA
X13914.1/2-302            UG.....GGUGGCUGGGGCGAAAGCU.UCGCCUUCU.CAGGC..CU.U
X65991.1/1-302            UG.....UGUGAGCCGGACGAAGGUC.UGGCUUGGU.CAGCUC.CU.A
AC005275.1/105500-105803  CG.....UGUGUGUCAAGCGAAGGCU.UGGCUCAAA.CGGCUU.CU.A
#=GC SS_cons              <<.....<<<<<<<<<<<<....>>>.>>>>>>>>>.>>>>>>.....

M21085.1/9-299            A...CCGGGGGAACCAGGCCAGGCCCGGA..AGGGAGCAACCUA.ACC
X17237.1/11-302           G...CCGGGGGGAACGGCCCAGGCCCGGA..AGGGAGCAGGCUA.ACC
AF006750.1/731-1010       AA.A.GUAGAGGAACUGGGUCAGGCCGGCA..ACGGAGCAGCCCA.CC
M80262.1/106-378          AA.A.GUGGGGGGAACGGGUCAGGCCGGUG..ACGGAGCAGCCCA.CC
X51658.1/237-504          AGA.UUAACUGGGAUACUUCAGUGGAGCA..AUCCAGCAGAGAUCCAG
Z99259.1/7742-7997        AAC.CGUGUAGUACCGAUGGAGGUUGGAA..ACAAUGCACAUCA.CUA
AB021174.1/1-299          AGG.AGGGGUGAACCGGCCCAGGUCGGAA..ACGGAGCAGGUCAAAAC
X13914.1/2-302            AAG.UGGCAGGCACCACGUUAGGCUGGUUUCACAGAGCAGCGACAACU
X65991.1/1-302            AAG.CGGAGGGCAAUGCGUGAGGCUGGUUUCACAGAGCAGCGACAACC
AC005275.1/105500-105803  AAGUUGGAGGGUAAUGCGUGAGGCUGGUUUCACAGAGCAGCGACUACU
#=GC SS_cons              .....<<<<<......<<<..<.<<<......>>>..>.>>>....>>

M21085.1/9-299            .CCGGACGCC.CGGCG.UUCGCGGGGCCA.C..GGGGUG..AGGCAAC
X17237.1/11-302           .CCGGACGAC.CGGCG.CUUCCGGGGGUG.CG.GGGAGG..AGGUGCC
AF006750.1/731-1010       U.C.GCGCACGUCUGCC.GUUGCA.GAACC.ACACCGCG..GA.GCCU
M80262.1/106-378          U.U.GCGCACGUUCCC..GUUCGA.GAAGC.ACACCGAG..GA.GCAU
X51658.1/237-504          .UUGC...CGUGGGUAUGGCGGUGGGAUA.GCAACAAAG....UGGU.
Z99259.1/7742-7997        .CCGG.GUCUUGGGCAGUGCGAUAGCGA..UGGGAUUC.....ACCU.
AB021174.1/1-299          .UCCCGUGCU.GAUCA.GUAGUG.GGAUC.GCGCCUGU..GA.AUAGC
X13914.1/2-302            .GCCCGCUUC.CAACG.GUGGAA.GGAUAACA.GGCCGCUG.CAGC..
X65991.1/1-302            .UCCCGCUCU.CGGCA.GUGGAA.GGAUAACG.GGCCGGUG.CUGC..
AC005275.1/105500-105803  .UCCCGCUUA.CAGCA.GUGGAC.GGAUCACA.GUUUAGCG.UCGC..
#=GC SS_cons              .>>>..>>>>.>>>>....>>>..>>.....>.>>>>>.....>>...

M21085.1/9-299            GGCCGGGC.CC.CCUGCCCUGGGCC....CCUAC......GGCUG...
X17237.1/11-302           UGGGGCUU.CA..AGCCGCCCGUA....AGGCA.......GGUCG...
AF006750.1/731-1010       G.UCAUC........ACCUGCGC......CCCAGGCGA..UCCUGUG.
M80262.1/106-378          CUCAGGAC........UUUGCGC.....CCCAAG.UGU..CGUCGCG.
X51658.1/237-504          AUAUGUUAU..................GGAAGGU......AUUUGCA.
Z99259.1/7742-7997        ...UCGCAG....GAU.GUGCAU....GGAAGUAU.....AAACACA.
AB021174.1/1-299          ..CACUG.........CACUCCAG....CCUGGGCAACAUAGCGAG.A
X13914.1/2-302            AUGGGCCCGCUC.UGGGCCUCCUA.....CCCCGC..CAU.A.GCAGA
X65991.1/1-302            UUGGACCCACC..AUGGUU.CACUGAG..CUGACU..CUUAA.UAGGA
AC005275.1/105500-105803  UCAGAACCACU..AUGGCC.UGCUGG...UCCGAU...CUCAUAUGAA
#=GC SS_cons              ...>>>>..........>>.>>........>>>>>.....>>..>>..

M21085.1/9-299            GCGUGCGGGG
X17237.1/11-302           ACCCGAGGCG
AF006750.1/731-1010       .AAGCUUU..
M80262.1/106-378          .AGGCGG...
X51658.1/237-504          .AUCACGACU
Z99259.1/7742-7997        ACGGUCGUU.
AB021174.1/1-299          CCCUGUCUCC
X13914.1/2-302            CCACCAUCUU
X65991.1/1-302            CCAUUUCUUU
AC005275.1/105500-105803  CCACCAUUU.
#=GC SS_cons              .>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00017:1
#=GF ID  SRP_euk_arch:1

X15364.1/835-1130       ACCGGAGGGUUAGGGG.UCCUCUGUAAGCGCAAAUCCCCUAUACGGCGCG
AE000940.1/8761-9056    ACCGGAGGGUUAGGGG.UCCUCUGUAAGCGCAAAUCCCCUAUAUGGCGCG
M22560.1/129-422        GCUGGGAGGUUAGGCG.UCUCCUGUAACUUGAAAUCGCCUUU..GCGAGA
AE010126.1/9583-9877    GCCGGGGGGUUCGGCG.UCCCCUGUAACCGGAAACCGCCGAUAUGCCGGG
AL354512.3/23429-23155  GCCGGAGC....UC...UGCUCUGUAACCU.....UC.........GGGG
M20837.1/128-397        ......CUU...AGC.......UGUAA........UG............G
Z99259.1/7742-7997      ............CGC.......UGUAA........UG............G
Z34533.1/38786-39082    ACCGAGCGUCGUGGCGGGCGCUUGUGAGUC.....AGCUUC...UUGACG
X14661.1/2-308          .CCGAGCUCUGUAGCGAGAGCUUGUAACCCG....AG........CGGGG
X65990.1/1-300          ...GGCCU.AGCAACGUGGGCCUGUAACCCA....AG........UGGGG
#=GC SS_cons            <<<.<<<<..........>>>>.....<<<................>>>>

X15364.1/835-1130       GUCGAAGUUCAGGGG....ACGGCU......GAUCG..............
AE000940.1/8761-9056    GUUGAAGUUCGGGGG....ACGGCU......GAUUG..............
M22560.1/129-422        GCCGAAAACUUGGGG....GCGGCA......UAAGUU.............
AE010126.1/9583-9877    GCCGAAGCCCGGGGG....GCGGUU......CCCA...............
AL354512.3/23429-23155  GCU...AACCAGGCUU....AGCGGGG.AGGACGUGGA............
M20837.1/128-397        CAUUUUGUCGGAGU....GGUAAAUC....GUCUUCUUGUUGUGCGUUCG
Z99259.1/7742-7997      C......UUGGUCG...AAGUGUUUA...GUACUCCCAA...........
Z34533.1/38786-39082    GU...AGAUGAGUGU..GGAUGGAGU.GAGAGGAGGA.............
X14661.1/2-308          GCAUUAAGGUGGUGC.GGAUUC.UUUG..CGAUGGCU.............
X65990.1/1-300          GCAUGUGGGAGAUGG..GACU..UUG...GGUCAGC..............
#=GC SS_cons            >>....<<<<<<<<.....<<..<<....<<<<<................

X15364.1/835-1130       ...................ACUGUUUAUCGG..CCCUGCUGAUUGGUGUC
AE000940.1/8761-9056    ...................ACUGUCCAUCGG..CCCUGAUGGUCGGUGUC
M22560.1/129-422        ...................CCCAAAUUUCAU...UCUUAAUUAGUAUGUC
AE010126.1/9583-9877    ...................AAGCCGCUCCCAGAAGCCGAGGUCGAACGAU
AL354512.3/23429-23155  ....................CCAGCGAGGGU....GAUUUG.C.UGCGUU
M20837.1/128-397        AGUCUUGGGCUCUGCAC......................UUGGCCA....
Z99259.1/7742-7997      ...................UAGUGCAU.GUU.CGGUGGUCUCGGGUUC..
Z34533.1/38786-39082    .................GUCCUGUGUAUG.....UCGUUG.UCAACGUC.
X14661.1/2-308          ...................UUCUG.GGCCC...GGGCUCGCUAUGUGCCU
X65990.1/1-300          ..................CCAUUG.GAUC....GGGUCCAGUGUUAGCUG
#=GC SS_cons            ......................<<.<<.......<<<<......<<....

X15364.1/835-1130       ...GAAGCCU.CG.UCCCGCAGGAUCA.G.UG..GUGAUGG....GGCCC
AE000940.1/8761-9056    ...GAAGCCU.CG.UCCCGCAGGAUCA.G.UG..GUGAUGG....GGCCC
M22560.1/129-422        ...GACGUUU.CG.UCCUUUGGGGUAA.GAUG..GUAAGAG....ACUCU
AE010126.1/9583-9877    ...GAGUCCU.CG.UCCCGCGGGGUGC..CCG..GUGGGGG....AGGCA
AL354512.3/23429-23155  ....GACGUGGUG.CUC.UGCUUGGCUG.UGUGU..CGGUGUG.GCUUGC
M20837.1/128-397        ....UUUGGUUGUCCUUUCCGAAUUCUGCGGUUGAUGGGCG..UCUCG.G
Z99259.1/7742-7997      .....GAGUCU..CGCUUUCG.AUCCCUCGAUC.UGCCACG..UCUGUUC
Z34533.1/38786-39082    ...GACCGAGCG.UCCGUGCCAAGCGC.UGCGU..CACCAG..GGGAUGA
X14661.1/2-308          UUGGCCGGCC.UGCCCGUCCCAAGUUG.GUAGU.GGCUGGC..GGAGGCU
X65990.1/1-300          CUUGCUGGUC.UGCCCAUUCCAAGCCG.AGAGUU.GGGCUG..UGUGAUC
#=GC SS_cons            .....<<<<<.<..<<..<<<..<<<<.<<<<...<<<<<<..<<<<<<<

X15364.1/835-1130       UGACUGGAGGGU.CAGGGUAA.ACCAUCUU...AG...UCAUGGGAAC.G
AE000940.1/8761-9056    UGACUGGAGGGU.CAGGGUAA.ACCAUCUU...AG...UCAUGGGAAC.G
M22560.1/129-422        CUUUCUUAAGAA.AGAGUCAA.ACUCUUUU...CG...UAUUUCGAAACC
AE010126.1/9583-9877    CGGCUGAAGGGC.CGUGCUAA..CCCCCUU...UG...GGCCCCGAACCC
AL354512.3/23429-23155  CCCCCUGCAGAGG.GUGGCGCGG.GU.CCGCCGUUGAA.GCGAGGGAACC
M20837.1/128-397        UCUGAGUAAUCG.GCUUUGAGA.UUUCCGUUCUAAGA.UUAACUGGGAAA
Z99259.1/7742-7997      GAAGAGUAGUCU.UCGUG.GCA.ACUGGCAGUUAAAC.CGUGUAGUACCG
Z34533.1/38786-39082    CUGUCGGAAGAU.GGUCAGUCC.CGGGUG.CAUAAGG.AGUGGUGGAU.G
X14661.1/2-308          UUAGCGGAAGCU.UUGGUCUCU..CCAGACCU.GAAG.UGGCAGGAAUGG
X65990.1/1-300          UGGGCGAAGGCU.GGGGUCGCA.CAGCUC.CU.AAAG.AGGAGGGCAAUG
#=GC SS_cons            <<<<<....>>>.>>>>>>>>>.>>>>>>..........<<<<<......

X15364.1/835-1130       GGUCAGGCCUGGA..AAGGAGCAGCCCU.ACC.AUGGACAGC.UGAUG.C
AE000940.1/8761-9056    GGUCAGGCCUGGA..AAGGAGCAGCCCU.ACC.AUGGACAGC.UGAUG.C
M22560.1/129-422        CGCCAGGCCCGGA..AGGGAGCAACGGU.AGA.AUUUACUUC.G.ACG.C
AE010126.1/9583-9877    CGCAAGGCCCGGA..AGGGAGCAGCGGU.AGG.GGCCACGGA.GCACG.C
AL354512.3/23429-23155  GGGUCAGGCCGGAA..ACGGAGCAGCCCA.CCC.C.ACGCACGUCCGCC.
M20837.1/128-397        CUUCAGUGGAGCA..AUCCAGCAGAGAUCCAG.UUGC...CGUGGGUAUG
Z99259.1/7742-7997      AUGGAGGUUGGAA..ACAAUGCACAUCA.CUA.CCGG.GUCUUGGGCAGU
Z34533.1/38786-39082    GUUCAGGACCGAA..AGGUAGCAGACAAAAGC.CACCGCGCG.GUGCA.G
X14661.1/2-308          CGUGAGGCUGGCUUCACAGAGCAGCGAUCACUCGCCCGCUUC.CAACG.G
X65990.1/1-300          CGUGAGGCUGGUUUCACAGAGCAGCGACCACC.UCCCGCUCU.CGGCA.G
#=GC SS_cons            <<<..<.<<<......>>>..>.>>>....>>.>>>..>>>>.>>>>...

X15364.1/835-1130       UUGCGGAUUAA.CG.GGGUGG..AGCCAGUCAGCGGGA.UC.ACCGGUAA
AE000940.1/8761-9056    UUGCGGAUUAA.CG.GGGUGG..AGCCGGUCAUCAGGA.UC.ACCGGCGG
M22560.1/129-422        UCAAGGGGUAG.CG.GGGCUG..AGUACUAAUUAAGGC.AA.AAUGAGAU
AE010126.1/9583-9877    UCGCGGGGGUG.CG.GGGAUG..AGAUAGGCCUCGGUG.GA..UGGGAGC
AL354512.3/23429-23155  GUUGCA.GAAUC.ACACCGCG..GA.GCAUGUCC.........GCACUUG
M20837.1/128-397        GCGGUGGGAUC.GCAACCAAG....UGGU.AUAUGUUAU...........
Z99259.1/7742-7997      GCGAUAGCGA..UGGGAUUC.....ACCU....UCGCAG....GAU.GUG
Z34533.1/38786-39082    UGGCC.GGACA.GCGCUUGU..GA.GUUGA..CACG.........UAUAC
X14661.1/2-308          UGGGA.GGAUAACG.GGCCGCUG.CACU..UCGAGCCCAACU.CAGGCC.
X65990.1/1-300          UGGAA.GGAUAACG.GGUCGGUG.CUAC..UUGGGCCA.CC..AUGG.U.
#=GC SS_cons            .>>>..>>.....>.>>>>>.....>>......>>>>..........>>.

X15364.1/835-1130       AUGG...AAGGUC.......UGUCAA..CCCCUGAACG
AE000940.1/8761-9056    AUGG...AAGAUC.......UGUCAA..CCCCUGAACG
M22560.1/129-422        UUGG...UGCUUU.......UGUCCA..CCCCAAGGA.
AE010126.1/9583-9877    GGUGG....AGGG.......UUCCCA..CCCUCGGGCG
AL354512.3/23429-23155  AGC.....CCCACGCUU...CGUCGCG..AAGCCUU..
M20837.1/128-397        .......GGAAGAU......AUUUACG..AUCACGAUU
Z99259.1/7742-7997      CAU....GGAAGUAU.....AAACACA.ACGGUCGUU.
Z34533.1/38786-39082    ACAG....CCUUCUCAAUACCUUCAG.ACCACUUGUCA
X14661.1/2-308          CAGAG....CC.UCA...CUAA.GCAGACCACCAUCUU
X65990.1/1-300          CACUGCA..UGCACU..CUUAA.UCAGACCAUCUCUUU
#=GC SS_cons            >>........>>>>>.....>>..>>...>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00017:2
#=GF ID  SRP_euk_arch:2

X17239.1/14-300           GUG.GAGGGUCUCGCCA.GCCCUUAUA.CCCACA..UGGCGCAACGUG
X15364.1/835-1130         ACC.GGAGGGUUAGGGG.UCCUCUGUAAGCGCAAAUCCCCUAUACGGC
AF006750.1/731-1010       GCC.GGAGC.....CU..UGCUCUGUAACCU.....UC.........G
M80262.1/106-378          AGCCGGAGCG..CAU...UGCUCUGUAACCU.....UC.........G
X51658.1/237-504          .............AGC.......UGUAA........UG..........
AC002512.1/76041-75744    GACUGGAAGG.UUGGCA.GCUUCUGUAAUCA.....CGCUUC...UGU
X01037.1/5-303            GCC.GGGCGCGGUGGCGCGUGCCUGUAGUCCC....AGCUACUC..GG
Z30973.1/7231-6935        ACC.GAGCGUCGUGGCGGGCGCUUGUGAGUC.....AGCUUC...UUG
X65990.1/1-300            ....GGCCU.AGCAACGUGGGCCUGUAACCCA....AG........UG
AC005275.1/105500-105804  GUC.GAGCUAAGUAACAUGAGCUUGUAACCCA....UG........UG
#=GC SS_cons              <<<..<<<<..........>>>>.....<<<................>

X17239.1/14-300           GGCACCAGUAACUCCUAUGC....UAUAA......UAC..........
X15364.1/835-1130         GCGGUCG..AAGUUCAGGGG...ACGGCU......GAUCG........
AF006750.1/731-1010       GGGGCU....UUCACCAGCUG...AACAGG..GAGCUGUCU.......
M80262.1/106-378          GGGGCU.....GAUCCCGCUU...AGCGGGG.ACGUCUUGGA......
X51658.1/237-504          ..GCAUU..UUGUCGGAGU...GGUAAAUC....GCCUUCUUGUUGUG
AC002512.1/76041-75744    GAGGU.....CUGAUUGUGG..GAUGGCCU.GAGGCUGGGAU......
X01037.1/5-303            GAGGC.....UGAGGCUGGA.GGAUCGCUU.GAGUCCAGGA.......
Z30973.1/7231-6935        ACGGU.....AGAUAAGUGU.GGAUGGAGU.GAGAGGAGGA.......
X65990.1/1-300            GGGGCAU..GUGGGAGAUGG.GACU..UUG...GGUCAGC........
AC005275.1/105500-105804  GGGACAU..UUAGAUGGUGG.AACAC..UG...GUUCGGG........
#=GC SS_cons              >>>>>......<<<<<<<<....<<..<<....<<<<<..........

X17239.1/14-300           .........................CUGCUCUUCGAGAUCCCAGUCUA
X15364.1/835-1130         .........................ACUGUUUAUCGGCCCUGCUGAUU
AF006750.1/731-1010       .......................GGACCAGCAUAGG..GUGCUUG.C.
M80262.1/106-378          ..........................CAAGCGGGG....GUUCUG.U.
X51658.1/237-504          CGUUCGAGUUCUGGACUCUGCAC....................UGGGC
AC002512.1/76041-75744    .......................CUACUGCGUAGCGG.ACCAG..CUC
X01037.1/5-303            .......................GUUCUGGGCUG....UAGUGC.GCU
Z30973.1/7231-6935        .......................GUCCUGUGUAUG...UCGUUG.UCA
X65990.1/1-300            ........................CCAUUG.GAUC..GGGUCCAGUGU
AC005275.1/105500-105804  ........................UCCACG.GGCC..GGUUCUGUUGU
#=GC SS_cons              ............................<<.<<.....<<<<......

X17239.1/14-300           ACUAU.....GAUCAU.CG.CCCGACGGGGCGA.GAUA..GUCGUGG.
X15364.1/835-1130         GGUGUC...GAAGCCU.CG.UCCCGCAGGAUCA.G.UG..GUGAUGG.
AF006750.1/731-1010       GGCGUU....GACGUGGUG.CUC.UGCUUGGCUG.UGUGU..CGGAGG
M80262.1/106-378          UGCGUU....GACUUGGUG.UUC.UGCUUGGUUG.CGUGU..CGGUGU
X51658.1/237-504          UA.......CUUUGUUUGUCCUUUCCGAAUUCUGCGGUUGAUGGGCG.
AC002512.1/76041-75744    AUGUU....GACGGAACG.UCCGCACUAAGCUU.GCCAU..CAAUAU.
X01037.1/5-303            AUGCC....GAUCGGGUG.UCCGCACUAAGUUC.GGCAU..CAAUAU.
Z30973.1/7231-6935        ACGUC....GACCGAGCG.UCCGUGCCAAGCGC.UGCGU..CACCAG.
X65990.1/1-300            UAGCUGCUUGCUGGUC.UGCCCAUUCCAAGCCG.AGAGUU.GGGCUG.
AC005275.1/105500-105804  UGGCAUGUUUCUGGGC.UGCCCAGUCCAAGCUG.UGAGU..AAGACG.
#=GC SS_cons              <<.........<<<<<.<..<<..<<<..<<<<.<<<<...<<<<<<.

X17239.1/14-300           .....GUUCCCUUUCUGGAGGGA.GAGGGAAU.UCCACGUU...GA..
X15364.1/835-1130         ......GGCCCUGACUGGAGGGU.CAGGGUAA.ACCAUCUU...AG..
AF006750.1/731-1010       CCUCCGGGUGCCCCCUUGCAGAAGGGGCGCGCCC.CCUCCG.U.UAA.
M80262.1/106-378          U....GAGGUCGCCACUGUAGAGA.GGCGUUCUC.GCGCCG.U.UAA.
X51658.1/237-504          ....UCUCG.GUCUGAGUAAUCG.GCUUUGAGA.UUUCCGUUCUAAGA
AC002512.1/76041-75744    ....GGGUGCCAUGGAGGAGUCC.GUGGCAUUC.AGGUUG.GCUAAGG
X01037.1/5-303            ....GGUGACCUCCCGGGAGCGG.GGGACCACC.AGGUUG.CCUAAGG
Z30973.1/7231-6935        ....GGGAUGACUGUCGGAAGAU.GGUCAGUCC.CGGGUG.CAUAAGG
X65990.1/1-300            ....UGUGAUCUGGGCGAAGGCU.GGGGUCGCA.CAGCUC.CU.AAAG
AC005275.1/105500-105804  ....UGUGUGUCAAGCGAAGGCU.UGGCUCAAA.CGGCUU.CU.AAAG
#=GC SS_cons              ....<<<<<<<<<<<<....>>>.>>>>>>>>>.>>>>>>........

X17239.1/14-300           .CCGGGGGAAC.CGGCCAGGCCCGGA..AGGGAGCAACCGU.GCC..C
X15364.1/835-1130         .UCAUGGGAAC.GGGUCAGGCCUGGA..AAGGAGCAGCCCU.ACC.AU
AF006750.1/731-1010       A.GUAGAGGAACUGGGUCAGGCCGGCA..ACGGAGCAGCCCA.CCU.C
M80262.1/106-378          A.GUGGGGGGAACGGGUCAGGCCGGUG..ACGGAGCAGCCCA.CCU.U
X51658.1/237-504          .UUAACUGGGAUACUUCAGUGGAGCA..AUCCAGCAGAGAUCCAG.UU
AC002512.1/76041-75744    .AGGGAUGAACCGGGCCAGGGGUGAA..AACCAGCAGCCAAGAGU.UC
X01037.1/5-303            .AGGGGUGAACCGGCCCAGGUCGGAA..ACGGAGCAGGUCAAAAC.UC
Z30973.1/7231-6935        .AGUGGUGGAU.GGUUCAGGACCGAA..AGGUAGCAGACAAAAGC.CA
X65990.1/1-300            .AGGAGGGCAAUGCGUGAGGCUGGUUUCACAGAGCAGCGACCACC.UC
AC005275.1/105500-105804  UUGGAGGGUAAUGCGUGAGGCUGGUUUCACAGAGCAGCGACUACU.UC
#=GC SS_cons              ..<<<<<......<<<..<.<<<......>>>..>.>>>....>>.>>

X17239.1/14-300           GGCUAUC..CGCG.UUCGUCGGUCUC.CG.AU.AGG..AGG.AAGACU
X15364.1/835-1130         GGACAGC.UGAUG.CUUGCGGAUUAA.CG.GGGUGG..AGCCAGUCAG
AF006750.1/731-1010       .GCGCACGUCUGCC.GUUGCA.GAACC.ACACCGCG..GA.GCCUG.U
M80262.1/106-378          .GCGCACGUUCCC..GUUCGA.GAAGC.ACACCGAG..GA.GCAUCUC
X51658.1/237-504          GC...CGUGGGUAUGGCGGUGGGAUA.GCAACAAAG....UGGU.AUA
AC002512.1/76041-75744    CCGUGGU.AGGCA.GUAGUG.GGAUA.GCGUACCG..GA.GUGGA..C
X01037.1/5-303            CCGUGCU.GAUCA.GUAGUG.GGAUC.GCGCCUGU..GA.AUAGC..C
Z30973.1/7231-6935        CCGCGCG.GUGCA.GUGGCC.GGACU.GCGCUUGU..GA.GUUGA..C
X65990.1/1-300            CCGCUCU.CGGCA.GUGGAA.GGAUAACG.GGUCGGUG.CUAC..UUG
AC005275.1/105500-105804  CCGCUUA.CAGCA.GUGGAC.GGAUCACA.GUUUAGCG.UCGC..UCA
#=GC SS_cons              >..>>>>.>>>>....>>>..>>.....>.>>>>>.....>>......

X17239.1/14-300           GGGGG.UAAAUCUCGGGGAGUA.....AGGG.......UUAUG...GC
X15364.1/835-1130         CGGGA.UC..ACCGGUAAAUGG...AAGGUC.......UGUCAA..CC
AF006750.1/731-1010       CAUC.........ACCUGCGC......CCCAGGCGA..UCCUGUG..A
M80262.1/106-378          AGGAC.........UUUGCGC.....CCCAAG.UGU..CGUCGCG..A
X51658.1/237-504          UGUUAU...................GGAAGGU......AUUUGCA..A
AC002512.1/76041-75744    UGC.........CGUUAU.CAG....CCCAACCGAUAUGGUUGG.ACC
X01037.1/5-303            ACUG..........CACUCCAG....CCUGGGCAACAUAGCGAG.ACC
Z30973.1/7231-6935        ACG..........UAUACACAG....CCUUCUCAAUACCUUCAG.ACC
X65990.1/1-300            GGCCA.CC...AUGG.U.CACUGCA..UGCACU..CUUAA.UCAGACC
AC005275.1/105500-105804  GAACCACU...AUGGCC.UGCUGGU..CCGAUC...UCAU.AUGAACC
#=GC SS_cons              >>>>...........>>.>>........>>>>>.....>>..>>...>

X17239.1/14-300           AUAGGGGA
X15364.1/835-1130         CCUGAACG
AF006750.1/731-1010       AGCUUU..
M80262.1/106-378          GGCGG...
X51658.1/237-504          UCACGACU
AC002512.1/76041-75744    ACAAUCUU
X01037.1/5-303            CCGUCUCU
Z30973.1/7231-6935        ACUUGUUU
X65990.1/1-300            AUCUCUUU
AC005275.1/105500-105804  ACCAUUUU
#=GC SS_cons              >>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00017:3
#=GF ID  SRP_euk_arch:3

AP000058.1/196062-195789  GGG........GCCCCG......AAGGCGCCACG.....CGGGGGCCA
X17239.1/14-300           GUG.GAGGGUCUCGCCA.GCCCUUAUA.CCCACA.....UGGCGCAAC
AF395888.1/197-488        GUC.GGGCAGUUAGGCC.CUGCUCUUCACCCGCGAAAUAGGUCUUU.A
AE000940.1/8761-9056      ACC.GGAGGGUUAGGGG.UCCUCUGUAAGCGCAAAU...CCCCUAUAU
AE013320.1/6338-6044      UCC.GGGUAGCCCGGCG.UUACCUGUAACCCGAAAU...CGCCGAUAC
X56981.1/102-383          GCCAGGGUAG..CA....AUACCUGUGUCUA.................
X01055.1/1-297            GCC.GGGCGCUGUGGCGUGUGCCUGUAAUCC........AGCUAC...
AP003253.3/106424-106740  GCC.GAGCUCAGUAGCGAGAGCCUGUAACCCA.......AG.......
Z29099.1/1-303            GCC.GAGCUCAGUAGCGUGGGCUUGUAACUCA.......AG.......
AB020752.1/35792-36096    GUC.GAGCUAUGUAACGAGAGCUUGUAACCCA.......AG.......
#=GC SS_cons              <<<..<<<<..........>>>>.....<<<.................

AP000058.1/196062-195789  GAAGAACCCG...CCCCCAGAGC.......UUG.......AAGC....
X17239.1/14-300           GUGGGCACCAGUAACUCCUAUGC.....UAUAA.......UAC.....
AF395888.1/197-488        GCGGGGACCG..AACA..CGGGC....GCGUCC.......GGUCA...
AE000940.1/8761-9056      GGCGCGGUUG..AAGUUCGGGGG....ACGGCU.......GAUUG...
AE013320.1/6338-6044      GCGGGGGACG..AAGCCAAAGGA....AGAUGU.......GCCA....
X56981.1/102-383          UAUGUGGC....AUAAACAAUGU....AGGUU....GUGAUAGAUAGG
X01055.1/1-297            UUGGAGGC.....UUGGGCUGUC..GGAUCGCUU..GAGUCCAUGAGU
AP003253.3/106424-106740  .CGGGGGCACU.AAAGGUGGCUGCGGAUGU.UUGGUGUGGAUUCUG.A
Z29099.1/1-303            .UGAGGGCAU..CAGUGUGGUGG..AAUG..UUG....AACAUGC..C
AB020752.1/35792-36096    .UGGGGACUA..UAAGAUGGUGG..AACAC..UG....GAUCGGC..C
#=GC SS_cons              ..>>>>>>......<<<<<<<<.....<<..<<.....<<<<<.....

AP000058.1/196062-195789  AGGCCAGCAAGGG.CCUGCAGGGUACAAU.....GAACCC.CG.UCCC
X17239.1/14-300           CUGCUCUUCGAG.AUCCCAGUCUAACUAU.....GAUCAU.CG.CCCG
AF395888.1/197-488        GACCGGCGCGGG.CCCCGGAAGCCAACGUA...GAAACCU.CG.UCCU
AE000940.1/8761-9056      ACUGUCCAUCGG.CCCUGAUGGUCGGUGUC...GAAGCCU.CG.UCCC
AE013320.1/6338-6044      GAGAGAUUCCAG.CCUGAAGUCUCAACUGA...GAAGCCC.CG.UCCU
X56981.1/102-383          AUAUGAGA.GUUUGAUGAGACAGUUUGCU....AAGAGUGUG.CCCGC
X01055.1/1-297            UCUGGGCUG.....CACUGA.GCUAUGUC....GAUCGGGUG.UCCGC
AP003253.3/106424-106740  UCCUG.GGCCC..CAUGUUGUUGUAAUC...UUGCUGGCU.UGCCCGU
Z29099.1/1-303            CAGAA.GGUA...GGGCUUGU..GUGACAAUUCUCUGGCC.UGCCCUG
AB020752.1/35792-36096    CA.CG.GGUC...GGAUUUGUUGUUGGCAUAGGUCUGGAC.UGCCCAA
#=GC SS_cons              ...<<.<<......<<<<......<<.........<<<<<.<..<<..

AP000058.1/196062-195789  GCGGGGCC..GGCG..GAGGCGG..GCGGCCAGCCGGAGGGCCGGCCG
X17239.1/14-300           ACGGGGCGA.GAUA..GUCGUGG.GUUCCCUUUCUGGAGGGAGAGGGA
AF395888.1/197-488        UCGGGGACA..GCG..GUUCCGC.GUACCCCUUCCGCAGGGAAGGGUU
AE000940.1/8761-9056      GCAGGAUCA.G.UG..GUGAUGG..GGCCCUGACUGGAGGGUCAGGGU
AE013320.1/6338-6044      GCUUGGAU..GGUG..CAGGUAU.GCGGGCCUGCUGGAAAACAGGUUC
X56981.1/102-383          UCCAAACAA.UGAGU..UGCUAUGGUGGUAACCUAGUAAUAGGACUCC
X01055.1/1-297            ACUAAGUUC.GGUAU..CAAUAUGGUUUUCCUGGGGGAGCCUCGGAUC
AP003253.3/106424-106740  UCCAAGUUGCGUAGU.GGGCCGGAGGGGCUUUGGCGAAGGCCUUUGCU
Z29099.1/1-303            UCCAAGCAA.AGAGUU.GGGUCUUGUGGGCCAAGCGAAGGCUUGGGCU
AB020752.1/35792-36096    UCCAAGCUG.UGAGU..GAACCGUAUGAACCAAGCGAAGGUUUGAUCC
#=GC SS_cons              <<<..<<<<.<<<<...<<<<<<<<<<<<<<<<<<....>>>>>>>>>

AP000058.1/196062-195789  AA.GCCGCCGU.......AG...CCGGGGCCACCCGGCGAGGCCCGGA
X17239.1/14-300           AU.UCCACGUU.......GA...CCGGGGGAAC.CGGCCAGGCCCGGA
AF395888.1/197-488        CG.CGCGGUUU.......A....UCGGUGGUACCCCGCCAGGCGCGGA
AE000940.1/8761-9056      AA.ACCAUCUU.......AG...UCAUGGGAAC.GGGUCAGGCCUGGA
AE013320.1/6338-6044      UC..AUACCCU.......AA...CCGUGGAAACCGGUCGAGGCCCGGA
X56981.1/102-383          ACC.AGGGCA.....UUAAAGA.GCUAAGGAAACGCCUCAGGCUGGCA
X01055.1/1-297            ACC.AGGUUG....CUCUAAGG.AGGGGUGAACCGGCCUAGGUCGGAA
AP003253.3/106424-106740  UUG.CUUCUCCGGCCCU.AAAG.UGGCAGGCACAGCGUGAGGCUGGCU
Z29099.1/1-303            GCU.GGGCUC.....CU.AAAG.UGGGGUGGACUGCGUGAGGCUGGUU
AB020752.1/35792-36096    GUA.CGGUUG.....CU.AAAGGUUGAGGGUAUUGCGUUAGGCUGGCU
#=GC SS_cons              >>>.>>>>>>..............<<<<<......<<<..<.<<<...

AP000058.1/196062-195789  ..AGGGAGCAGCCG..ACCCCGGCCGACCGGCGUUCGCGGGGGGA.AC
X17239.1/14-300           ..AGGGAGCAACCGU.GCC.CGGCUAUC.CGCGUUCGUCGGUCUC.CG
AF395888.1/197-488        ..AGCGAGCAGCGGA.CCAUCGGACGUGCGUCGCUCGAGGGAUCG.CG
AE000940.1/8761-9056      ..AAGGAGCAGCCCU.ACCAUGGACAGCUGAUGCUUGCGGAUUAA.CG
AE013320.1/6338-6044      ..AGGGAGCAGACUC.ACUGUGGGCAACCGUCGCUUGCGGGGUCG.CG
X56981.1/102-383          ..ACAGAACAGGGAAAACUUGCCGCUUGUUGUGGUGGAA.GGAUA.AC
X01055.1/1-297            ..ACGGAGCAGGUCAAAACCCCCGUGCCGAUCAGUAGUG.GGAUC.GC
AP003253.3/106424-106740  UCACAGAGCAGCGAUCACUGCCCGCUUCCAUCGGUGGAA.GGAUAACA
Z29099.1/1-303            UCACAGAGCAACGAAUAGCUCCCGCUCUGUGCAGUGGAA.GGAUAACG
AB020752.1/35792-36096    UCACAGAGCAGCGACUACCUCCCGCUCUCAGCAGUGGAC.GGACAACG
#=GC SS_cons              ...>>>..>.>>>....>>>>>..>>>>>>>>...>>>..>>.....>

AP000058.1/196062-195789  .GGGGGG..AGAAGCCCUGCAGGG.UA.ACCCU..CUGGCCU....GC
X17239.1/14-300           .AU.AGG..AGG.AAGACUGGGGG.UAAAUCUCGGGGAGUA.....AG
AF395888.1/197-488        .GGGUGG..AGGAGGCAACCGGGA.UU.CCCC.ACGUCGGA....ACG
AE000940.1/8761-9056      .GGGUGG..AGCCGGUCAUCAGGA.UC..ACCGGCGGAUGG...AAGA
AE013320.1/6338-6044      .GGGUGG..AGAAGAGAUCUCAGC.CU..ACUGGAGCUUCC....GAG
X56981.1/102-383          AUACUC..A.UUAACUGUCAA.........ACUAAU.C..GUUCUA.C
X01055.1/1-297            GCCUGU..GA.AUAGC..CGGUG..........CAGAACAG....CCU
AP003253.3/106424-106740  .GGCUGCUG.CACC..UUGGGCCCGCUU..CUGGCC.CAGAGU...CC
Z29099.1/1-303            .AGCCAGUG.UCAU..AUAAGUUCAAC..GAAUGUC.UGAUGG...GC
AB020752.1/35792-36096    .GUUCGACG.CCAC..ACAAAUCCACU...AUGGUC.CGCUGGC..UC
#=GC SS_cons              .>>>>>.....>>......>>>>...........>>.>>........>

AP000058.1/196062-195789  UU.......CAAACUCUGGGAGCGGG.
X17239.1/14-300           GG.......UUAUG...GCAUAGGGGA
AF395888.1/197-488        CC.......GGGCAA..CCUCG..C..
AE000940.1/8761-9056      UC.......UGUCAA..CCCCUGAACG
AE013320.1/6338-6044      GC.......GCAGCG..ACCUGAGGCG
X56981.1/102-383          UAUCA....AAGCCA.GACAUU.....
X01055.1/1-297            GAACAACACAGCGAG.ACACAGUUCU.
AP003253.3/106424-106740  CUCU...ACAA..CAGACCACCAUCUU
Z29099.1/1-303            UGUU...CUAG.UUAAACUACCACAUU
AB020752.1/35792-36096    GUAA..CCCGC.UUGAACCACCAUUUU
#=GC SS_cons              >>>>.....>>..>>...>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00017:4
#=GF ID  SRP_euk_arch:4

M32222.1/953-1250       GCC.GGGGGGUUAGGGG.UCCCCUGUAAGCGCAAAUCCCCUAUAUGGCGC
U67510.1/7006-7301      GCC.GGGGGGUUGGGCG.UCCCCUGUAACCCGAAAUCGCCCUUAUGCGGG
M22560.1/129-422        GCU.GGGAGGUUAGGCG.UCUCCUGUAACUUGAAAUCGCCUUU..GCGAG
AE013320.1/6338-6044    UCC.GGGUAGCCCGGCG.UUACCUGUAACCCGAAAUCGCCGAUACGCGGG
AE010387.1/4828-4528    GCC.GGCGGGCUGGCGG.UCCGCUGUAACCCGAAAUCCGCCUCAUGCGGG
AC002512.1/76041-75744  GACUGGAAGG.UUGGCA.GCUUCUGUAAUCA.....CGCUUC...UGUGA
X01055.1/1-297          GCC.GGGCGCUGUGGCGUGUGCCUGUAAUCC.....AGCUAC...UUGGA
Z30973.1/7231-6935      ACC.GAGCGUCGUGGCGGGCGCUUGUGAGUC.....AGCUUC...UUGAC
Z29104.1/1-303          GCC.GAGCUUAGUAAUGUGGGCUUGUAACCCA....AA........UGGG
X65991.1/1-302          ....GGCCU.AGCAACGUGGGCCUGUAACCCA....AG........UGGG
#=GC SS_cons            <<<..<<<<..........>>>>.....<<<................>>>

M32222.1/953-1250       GGCCGAAGCCCAGGAG..GCGGCA.....AGACC....GCCAGACAUCGG
U67510.1/7006-7301      GGCCGAAAACUUGGGG..GCGGCA.....UGUCCU...CCAGUCCUUCCU
M22560.1/129-422        AGCCGAAAACUUGGGG..GCGGCA.....UAAGUU...CCCAAAUUUCAU
AE013320.1/6338-6044    GGACGAAGCCAAAGGA..AGAUGU.....GCCA.....GAGAGAUUCCAG
AE010387.1/4828-4528    GGCCGAAGCCGAGGGG..GCGGCC.....CGGUC..CCCCGGAGUACCGG
AC002512.1/76041-75744  GGU...CUGAUUGUGG.GAUGGCCUGAGGCUGGGAUCUACUGCGUAGCGG
X01055.1/1-297          GGC...UUGGGCUGUCGGAUCGCUUGAGUCCAUGA.GUUCUGGGCUG...
Z30973.1/7231-6935      GGU...AGAUAAGUGUGGAUGGAGUGAGAGGAGGA.GUCCUGUGUAUG..
Z29104.1/1-303          GGCAUUAAUGUGGUGGAAUG..UUG..GGCUGUA...CCAGAU.GGUUG.
X65991.1/1-302          GGCAUGUGGGAAAUGGGACU..UUA..GUUCGGC...CCAUUG.GAUC..
#=GC SS_cons            >>>....<<<<<<<<...<<..<<...<<<<<.........<<.<<....

M32222.1/953-1250       ..CCUGAGGGUUAAACAAU....GAAGCCU.CG.UCCCACAGGGCCA.CC
U67510.1/7006-7301      ...UCCCAGACUCCUCGAU....GAGGUCU.CG.UCCCGUGGGGCUCGGC
M22560.1/129-422        ...UCUUAAUUAGUAUGUC....GACGUUU.CG.UCCUUUGGGGUAAGAU
AE013320.1/6338-6044    ..CCUGAAGUCUCAACUGA....GAAGCCC.CG.UCCUGCUUGGAU.GGU
AE010387.1/4828-4528    CCCCCCGGACCCGACCGAU....GACCCUC.CGGCCCCCCGGGGGCCCGG
AC002512.1/76041-75744  ...ACCAG..CUCAUGUU.....GACGGAACG.UCCGCACUAAGCUUGCC
X01055.1/1-297          ...CACUGA.GCUAUGUC.....GAUCGGGUG.UCCGCACUAAGUUCGGU
Z30973.1/7231-6935      ...UCGUUG.UCAACGUC.....GACCGAGCG.UCCGUGCCAAGCGCUGC
Z29104.1/1-303          ...GGCUUGGU..GGGCUAAU.UUCUGGCC.UGCCCUAUCCAAGCACAGA
X65991.1/1-302          ..GGAUCCAGUGUUAGCUGC.UUGCUGGGC.UGCCCAUUCCAAGCCGAGA
#=GC SS_cons            ...<<<<......<<..........<<<<<.<..<<..<<<..<<<<<<<

M32222.1/953-1250       G..GUGGCGA..GGGUCCAGCUGGAGGGCUGGACCUA.AUCGCCUU....
U67510.1/7006-7301      G..GUGGGGG..AGCAUCUCCUGUAGGGGAGAUGUAA.CCCCCUUU....
M22560.1/129-422        G..GUAAGAG..ACUCUCUUUCUUAAGAAAGAGUCAA.ACUCUUUU....
AE013320.1/6338-6044    G..CAGGUAU.GCGGGCCUGCUGGAAAACAGGUUCUC..AUACCCU....
AE010387.1/4828-4528    G..GUGGCGG..GGCCGCCGCCGGAGGGCGGCGCGCC.ACCGCCUU....
AC002512.1/76041-75744  AU..CAAUAUGGGUGCCAUGGAGGAGUCCGUGGCAUUC.AGGUUG..GCU
X01055.1/1-297          AU..CAAUAUGGUUUUCCUGGGGGAGCCUCGGAUCACC.AGGUUG.CUCU
Z30973.1/7231-6935      GU..CACCAGGGGAUGACUGUCGGAAGAUGGUCAGUCC.CGGGUG..CAU
Z29104.1/1-303          GUU.GGAUCAUGUGGUCCAAUUGAAAGAAUGGGCUACU.AGAUUC..CU.
X65991.1/1-302          GUU.GAGCUGUGUGAGCCGGACGAAGGUCUGGCUUGGU.CAGCUC..CU.
#=GC SS_cons            <...<<<<<<<<<<<<<<<<<<....>>>>>>>>>>>>.>>>>>>.....

M32222.1/953-1250       UG..CUGCGGGAAC.GGGUCAGGCCCGGA..AGGGAGCAGCCCU.ACCGC
U67510.1/7006-7301      A...CCUGCCGAACCCCGCCAGGCCCGGA..AGGGAGCAACGGU.AGGCA
M22560.1/129-422        CG..UAUUUCGAAACCCGCCAGGCCCGGA..AGGGAGCAACGGU.AGAAU
AE013320.1/6338-6044    AA..CCGUGGAAACCGGUCGAGGCCCGGA..AGGGAGCAGACUC.ACUGU
AE010387.1/4828-4528    U...GCCGGGGCACCGGGUCAGGCCCGAG..AGGGAGCAGCCCA.CCCCG
AC002512.1/76041-75744  AAGGAGGGAUGAACCGGGCCAGGGGUGAA..AACCAGCAGCCAAGAGUUC
X01055.1/1-297          AAGGAGGGGUGAACCGGCCUAGGUCGGAA..ACGGAGCAGGUCAAAACCC
Z30973.1/7231-6935      AAGGAGUGGUGGAU.GGUUCAGGACCGAA..AGGUAGCAGACAAAAGCCA
Z29104.1/1-303          AAAGUGGGGUGGACCGCGUGAGGCUGGUUUCACAGAGCAACGAAAAACUU
X65991.1/1-302          AAAGCGGAGGGCAAUGCGUGAGGCUGGUUUCACAGAGCAGCGACAACCUC
#=GC SS_cons            .....<<<<<......<<<..<.<<<......>>>..>.>>>....>>>>

M32222.1/953-1250       AGACGGAUGGUGCUUGUGGGUCAA.CG.GGGUGGAGUCUAUAACCCUCAG
U67510.1/7006-7301      GGACGUCG.GCGCUCACGGGGGUG.CG.GGACGG.AGAAGGAAUCUGGGG
M22560.1/129-422        UUACUUCG.ACGCUCAAGGGGUAG.CG.GGGCUG..AGUACUAAUUAAGG
AE013320.1/6338-6044    GGGCAACCGUCGCUUGCGGGGUCG.CG.GGGUGG..AGAAGAGAUCUCAG
AE010387.1/4828-4528    GACCCGCGGCCGCUCG.GGGGUCG.CC.GGAGGC..AGGUCGGCCGGGGG
AC002512.1/76041-75744  CCGUGGUAGGCAGUAGUG.GGAUA.GCGUACCG..GA.GUGGA..CUGC.
X01055.1/1-297          CCGUGCCGAUCAGUAGUG.GGAUC.GCGCCUGU..GA.AUAGC..CGGUG
Z30973.1/7231-6935      CCGCGCGGUGCAGUGGCC.GGACU.GCGCUUGU..GA.GUUGA..CACG.
Z29104.1/1-303          CCGCUUUGUGCAGUGGAA.GGAUAACG.GACCGGUGCCUU...CCAAGUU
X65991.1/1-302          CCGCUCUCGGCAGUGGAA.GGAUAACG.GGCCGGUG.CUGC..UUGGACC
#=GC SS_cons            >..>>>>>>>>...>>>..>>.....>.>>>>>.....>>......>>>>

M32222.1/953-1250       A.UCACCGGUGUCUGG...UGGUCU.......UGUCCA..CUCCUGGGCG
U67510.1/7006-7301      G.CG..AGGGAGGACUG..GAGGACA......UGCCCA..CCCCAAGGA.
M22560.1/129-422        C.AAAAUGAGAUUUGG...UGCUUU.......UGUCCA..CCCCAAGGA.
AE013320.1/6338-6044    C.CUACUGGAGCUUCC....GAGGC.......GCAGCG..ACCUGAGGCG
AE010387.1/4828-4528    A.GUACCGG.GCUCCGG..GGGCCG.......GGUCCA..CCCCUCGGCG
AC002512.1/76041-75744  ......CGUUAU.CAG....CCCAACCGAUAUGGUUGG.ACCACAAUCUU
X01055.1/1-297          ........CAGAACAG....CCUGAACAACACAGCGAG.ACACAGUUCU.
Z30973.1/7231-6935      .......UAUACACAG....CCUUCUCAAUACCUUCAG.ACCACUUGUUU
Z29104.1/1-303          CCAUUAAUGCC.UGAUGG...GCUGCU...CCAA.UUAAACCACCACUUU
X65991.1/1-302          CACC.AUGGUU.CACUGAG..CUGACU..CUUAA.UAGGACCAUUUCUUU
#=GC SS_cons            .........>>.>>........>>>>>.....>>..>>...>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00162:0
#=GF ID  S_box:0

Z99123.2/188544-188650    UCCUUAUCAAGAGAGGUGGAGGGA.CUGGCCCUGCGAUACC.CGGCAA
Z99109.2/169069-168952    UUCUUAUCAAGAGAAGCAGAGGGA.CUGGCCCGACGAAGCUUCAGCAA
AP001511.1/149016-149129  GACUUAUCGAGAGAGGCAGAGGGA.CUGACCCGAUGAUGCC.CGGCAA
AP004596.1/197999-197893  UUCUUAUCCAGAGAGGUGGAGGGA.CUGGCCCAAGGAAGCCUCGGCAA
AP004603.1/200738-200630  AUCUUAUCCUGAGAGGUGGAGGGAAAUGGCCCAAAGAAGCCUCGGCAA
AL591976.1/242770-242867  AACUUAUCAAGAAAGGUGGAGGGUUCUGGCCCCGUGAAGCCUUGGCAA
AL591983.1/96176-96058    AUCUUAUCCAGAGUGGUGGAGGGA.AAUGCCCUAUGAAGCC.CAGCAA
AL591980.1/66651-66543    CUCUUAUCCAGAGCGGUAGAGGGA.CUGACCCUUUGAAGCC.CAGCAA
AF269983.1/571-671        ACCUUAUUUUGAGAAGCUGAGGGAUUUGGCCCAUAGAAGCUUCAGCAA
AE007614.1/6196-6300      CACUUAUCAAGAGAGGUGGAGGGA.CCGGCCCUGUGAAGCC.CAGCAA
#=GC SS_cons              <<<<<<<<......<<<...<<<......>>>......>>>..<<<.<

Z99123.2/188544-188650    CCGCUGUUU............AACAGAAUGGUGCUAAAUC.CUUUAGA
Z99109.2/169069-168952    CCGGUGUAAUGGCGAUCAGCCAUGACCAAGGUGCUAAAUC.CAGCAAG
AP001511.1/149016-149129  CCCGUUUGUUAGCCAAG....CAAACGAAGGUGCUAAUUU.CAGCAGA
AP004596.1/197999-197893  CAGACUUAUUUGAU.......UAAGUAC.UGUGCCAAUUC.CAGUAGC
AP004603.1/200738-200630  CAGGUUCUAGC..........UUGAAUACUGUGCCAAAUC.CAUCAAG
AL591976.1/242770-242867  CCGGAUUU................UUCACGGUGCCAAAUC.CAGCAGG
AL591983.1/96176-96058    CCUAAACAAUAAUUCAUUAU.GUGUUUAAGGUGCUAAGUC.AUGCAGA
AL591980.1/66651-66543    CCUACACAUAU..........AAGUGAAAGGUGCUAAUCUGUUGCAGG
AF269983.1/571-671        CCGACUUUA............AAUAGCACGGUGCUAAUAC.CAACGAG
AE007614.1/6196-6300      CCUGUAUAUGUUAAU......UAUACAA.GGUGCUAAUUC.CUGCAGC
#=GC SS_cons              <<<<<...................>>>..>>>>>>.........<<<<

Z99123.2/188544-188650    GCAA.UGAUUGCUCUUGAAGAUAAGGU
Z99109.2/169069-168952    CUC..GAAC.AGCUUGGAAGAUAAGAA
AP001511.1/149016-149129  AUG..AUUUCAUUCUGGAAGAUAAGCG
AP004596.1/197999-197893  G....UAAU..UGCUAGAAGAUGAGAA
AP004603.1/200738-200630  UAU..UCUA.UGCUUGGUAGAUAAGAG
AL591976.1/242770-242867  .....UAAC...ACUGACAGAUAAGGC
AL591983.1/96176-96058    ACAACUAAUUGUUCUGAAAGAUGAGAA
AL591980.1/66651-66543    AGUA.UUAU.CUUCUGAACGAUGAGAG
AF269983.1/571-671        .....CAA....CUCGAAUGAUAAGUA
AE007614.1/6196-6300      .....GCUA...GCUGAGAGAUGAGAA
#=GC SS_cons              ............>>>>...>>>>>>>>
//
# STOCKHOLM 1.0

#=GF AC  RF00162:1
#=GF ID  S_box:1

AE012834.1/3852-3958      CUAUCAUCCAGAA.AGGCGGAGGGA.CUGG.CCCUGCGAAGCCUUGGC
Z99123.2/188544-188650    UCCUUAUCAAGAG.AGGUGGAGGGA.CUGG.CCCUGCGAUACC.CGGC
AP001511.1/149016-149129  GACUUAUCGAGAG.AGGCAGAGGGA.CUGA.CCCGAUGAUGCC.CGGC
AP004602.1/9845-9739      UUCUUAUCAUGAG.AGGCGGAGGGAAAUGG.CCCAACGAAACCUCGGC
AP004600.1/266413-266303  CUCUUAUUCAGAGUUGGUGGAGGGA.CAGA.CCCGAUGAAGCC.CAGC
AL596163.1/172398-172500  UUCUUAUCCAGAG.UGGUGGAGGGAAUCGG.CCCAGUGAAACC.CGGC
AF269983.1/571-671        ACCUUAUUUUGAG.AAGCUGAGGGAUUUGG.CCCAUAGAAGCUUCAGC
U36379.1/1-106            AUCCU.....GAG.UGGUGGAGGGACAUGGACCCAAUGAAACC.CAGC
AP004829.1/296359-296264  CACUUAUCUAGAG.AGGUGGAGGGA.CUGG.CCCUAUGAAGCCUCGGC
AE015940.1/18048-17945    AUCUUAUCAAGAG.CGGUUGAGGGA.CUGG.CCCUAUGAAACC.CAGC
#=GC SS_cons              <<<<<<<<.......<<<...<<<.......>>>......>>>..<<<

AE012834.1/3852-3958      AACCUUCAUUCCA......CAUGAGC.GGUGCCAAAUC..CAUCCCGG
Z99123.2/188544-188650    AACCGCUGUUU........AACAGAAUGGUGCUAAAUC..CUUUAGAG
AP001511.1/149016-149129  AACCCGUUUGUUAGCCAAGCAAACGAAGGUGCUAAUUU..CAGCAGAA
AP004602.1/9845-9739      AACAGGUUCUUAU......UAGAAUACUGUGCCAAUUC..CAUCAAGC
AP004600.1/266413-266303  AACCAUCACUACU......GGUGAAAAGGUGCUAAUCUG.AUGCAAGG
AL596163.1/172398-172500  AGCGGAGCGC.........AAGUUC..UAUGCUAAUUCC.GAUCAGAA
AF269983.1/571-671        AACCGACUUUA........AAUAGCACGGUGCUAAUAC..CAACGAG.
U36379.1/1-106            AACCUCUUUUUUAU.....AAAAGAAAGGUGCCAAACCGUUUGCAGAC
AP004829.1/296359-296264  AACA....UCU........CGA...A.UGUGCCAAUUC..CAGUAACC
AE015940.1/18048-17945    AACCUAUACACAA......AGUAUAAAGGUGCUAACUC..CAGCAGGA
#=GC SS_cons              .<<<<<<...............>>>..>>>>>>..........<<<<.

AE012834.1/3852-3958      AG.GAAA...UCCGGGAAAGAUGAUGU
Z99123.2/188544-188650    CAAUGAU..UGCUCUUGAAGAUAAGGU
AP001511.1/149016-149129  UG.AUUU..CAUUCUGGAAGAUAAGCG
AP004602.1/9845-9739      A...AAU...UGCUUGAAAGAUAAGAG
AP004600.1/266413-266303  A..UAAUAGUUCCUUGAACAAUAAGAG
AL596163.1/172398-172500  G..UAAU...AUUCUGGCAGAUAAGUA
AF269983.1/571-671        ...CAA......CUCGAAUGAUAAGUA
U36379.1/1-106            A..AAUA...GGUCUGAACGAUAAGAG
AP004829.1/296359-296264  G...UAA...UGGUUUGAAGAUAAGCA
AE015940.1/18048-17945    ...AAUU....UCCUGAAAGAUAAGAA
#=GC SS_cons              ............>>>>...>>>>>>>>
//
# STOCKHOLM 1.0

#=GF AC  RF00162:2
#=GF ID  S_box:2

AJ000974.1/281-386        AACUUAUCAAGAG.CGGCUGAGGGA..CUGG.ACCUAUGAAGCC.CGG
AF027868.1/5245-5154      UUUCUAUCCAGAG.AGGUGGAGGGA..CUGG.CCCUAUGAAACCUCGG
Z99123.2/187154-187260    ACCUUAUCAAGAG.AGGUGGAGGGA..CUGG.CCCUAUGAUACC.CGG
Z99109.2/169069-168952    UUCUUAUCAAGAG.AAGCAGAGGGA..CUGG.CCCGACGAAGCUUCAG
AP001518.1/300422-300310  CUCUUAUCAUGAG.AGGUGGAGGGA..CUGG.CCCGAUGAAGCC.CAG
AP001518.1/137068-136956  CUCUUAUCCAGAGUUGGUGGAGGGA..CAGG.CCCGAAGAAACCCCAG
AL591976.1/242770-242867  AACUUAUCAAGAA.AGGUGGAGGGUU.CUGG.CCCCGUGAAGCCUUGG
AF269983.1/571-671        ACCUUAUUUUGAG.AAGCUGAGGGAU.UUGG.CCCAUAGAAGCUUCAG
AP004828.1/56121-56010    CUCUUAUCCUGAG.UGGUGGAGGGAC.AUGGACCCAAUGAAACC.CAG
AP003193.2/95783-95678    CUCUUAUCCAGAG.AGGUGGAGGGAAAAAGG.CCCUAUGAAACC.CGG
#=GC SS_cons              <<<<<<<<.......<<<...<<<........>>>......>>>..<<

AJ000974.1/281-386        CAACCUGCAUAG............UUUGUAA...GGUGCUACUUC..C
AF027868.1/5245-5154      CAACA....UU..............AU.......UGUGCCAAUUC..C
Z99123.2/187154-187260    CAACCGCUGUUUCA..........AACAGAAU..GGUGCUAAAUC..C
Z99109.2/169069-168952    CAACCGGUGUAAUGGCGAUCAGCCAUGACCAA..GGUGCUAAAUC..C
AP001518.1/300422-300310  CAACCGCCAAGCAGCAAAUCGC..UUGGAAAA..GGUGCUAAUUC..C
AP001518.1/137068-136956  CAACCAACACCUGUUAAACA....AAGGUGAAAAGGUGCUAA..C..C
AL591976.1/242770-242867  CAACCGGAUUU................UUCAC..GGUGCCAAAUC..C
AF269983.1/571-671        CAACCGACUUUA............AAUAGCAC..GGUGCUAAUAC..C
AP004828.1/56121-56010    CAACCUCUUUUUUUAU........AAAAGAAA..GGUGCCAAACCGUU
AP003193.2/95783-95678    CAACCAGUGAGAA...........AUCACUAC..GGUGCCAAUUC..C
#=GC SS_cons              <.<<<<<<...................>>>....>>>>>>........

AJ000974.1/281-386        AGCAAAAUGAAUUCCAUUUUGAAAGAUAAGGG
AF027868.1/5245-5154      AGCAAGC..GCUA...GCUUGAAAGAUAGGAA
Z99123.2/187154-187260    UUAAGAACAUUGC..GUUCUUGCAGAUGAGGC
Z99109.2/169069-168952    AGCAAGCUCGAAC..AGCUUGGAAGAUAAGAA
AP001518.1/300422-300310  UGCAAAGC..GAU..GCUUUGAGAGAUGAGAG
AP001518.1/137068-136956  UGCAAGGC..GUU..GCCUUGAAAGAUAAGAG
AL591976.1/242770-242867  AGCAGG...UAAC....ACUGACAGAUAAGGC
AF269983.1/571-671        AACGAG...CAA.....CUCGAAUGAUAAGUA
AP004828.1/56121-56010    UGCAGACA.AAUA..GGUCUGAACGAUAAGAG
AP003193.2/95783-95678    GGUAAAGA..AAU..UCUUUACAAGAUGAGAG
#=GC SS_cons              ..<<<<...........>>>>...>>>>>>>>
//
# STOCKHOLM 1.0

#=GF AC  RF00162:3
#=GF ID  S_box:3

Z99110.2/47875-47995      UUCUUAUCGUGAGAGGUGGAGGGA.CUGG.CCCUUAGAAACCUCAGCA
AP004601.1/38307-38208    CUCUUAUCUAGAGCGGUGGAGGGA.CUGG.CCCUUUGAAACCGCGGCA
AP004596.1/197999-197893  UUCUUAUCCAGAGAGGUGGAGGGA.CUGG.CCCAAGGAAGCCUCGGCA
AP004604.1/167020-166901  CUCUUAUUGAGAGUGGCUGAGGGA.CUGG.CCCUGUGACGCC.CGGCA
AL596170.1/192-86         CUCUUAUUAUGAGUGGUAGAGGGA.CUGG.CCCGUUGAAACC.CAGCA
AL591983.1/96176-96058    AUCUUAUCCAGAGUGGUGGAGGGA.AAUG.CCCUAUGAAGCC.CAGCA
AL596166.1/166748-166844  AACUUAUCAAGAAAGGUGGAGGGUUCUGG.CCCAGUGAAGCCUUGGCA
AL591974.1/109385-109266  CUCUUAUCGAGAGCGGCAGAGGGA.CUGG.CCCGAUGAAGCC.CGGCA
AE016744.1/15971-16071    ACCUUAUUUUGAGAAGCAGAGGGAUUUGG.CCCGUAGAAGCUUCAGCA
AP004828.1/56121-56010    CUCUUAUCCUGAGUGGUGGAGGGACAUGGACCCAAUGAAACC.CAGCA
#=GC SS_cons              <<<<<<<<......<<<...<<<.......>>>......>>>..<<<.

Z99110.2/47875-47995      ACCGGCUUGUUUUGCAUUUGCAAAGCGCCAAGGUGCUAAAUC..CAGC
AP004601.1/38307-38208    ACCUUCAUAAUUA..........AAUGAAA.GGUGCCAAUUC..CUGC
AP004596.1/197999-197893  ACAGACUUAUUUGAU........UAAGUAC.UGUGCCAAUUC..CAGU
AP004604.1/167020-166901  ACCGUUCAUCGUAAUUCCAGUG.AUGAAUA.GGUGCUAAAUC..CUGC
AL596170.1/192-86         ACCUUUCAAUUCG..........UUGAAAA.GGUGCUAAAUC..CUGC
AL591983.1/96176-96058    ACCUAAACAAUAAUUCAUUAU..GUGUUUAAGGUGCUAAGUC..AUGC
AL596166.1/166748-166844  ACCGGACUU.................UUCACGGUGCCAAAUC..CAGC
AL591974.1/109385-109266  ACCUAACUUUAUUUAAGCAU...AAAGUGAAGGUGCUAAUUC..CAGC
AE016744.1/15971-16071    ACCGACUUUA.............AAUAGCACGGUGCUAAUAC..CAAC
AP004828.1/56121-56010    ACCUCUUUUUUUAU.........AAAAGAAAGGUGCCAAACCGUUUGC
#=GC SS_cons              <<<<<<....................>>>..>>>>>>..........<

Z99110.2/47875-47995      AAGCGU..UUUU.UAUGCUUGGAAGAUAAGAA
AP004601.1/38307-38208    AG.......AAA......AUGAAAGAUGAGAG
AP004596.1/197999-197893  AGCG....UAAU....UGCUAGAAGAUGAGAA
AP004604.1/167020-166901  AAAAUAC.GGACAGUAUUUUGAGAAAUAAGAG
AL596170.1/192-86         GAAGUG..UGAU...GCUUCGAGAGAUAAGAG
AL591983.1/96176-96058    AGAACAACUAAU..UGUUCUGAAAGAUGAGAA
AL596166.1/166748-166844  AGU......AUC.....ACUGACAGAUAAGGC
AL591974.1/109385-109266  AAAAUGGUGUAUUCCGUUUUGGUAGAUAAGAG
AE016744.1/15971-16071    GAG.....CAA......CUCGAAUGAUAAGUA
AP004828.1/56121-56010    AGACA...AAUA...GGUCUGAACGAUAAGAG
#=GC SS_cons              <<<..............>>>>...>>>>>>>>
//
# STOCKHOLM 1.0

#=GF AC  RF00162:4
#=GF ID  S_box:4

Z99111.2/15242-15342      UUCUUAUCAAGAGCAGGCAGAGGGA.CGAGCCCGAUGAAGCC.CGGCA
AP001518.1/300422-300310  CUCUUAUCAUGAG.AGGUGGAGGGA.CUGGCCCGAUGAAGCC.CAGCA
AP001511.1/149016-149129  GACUUAUCGAGAG.AGGCAGAGGGA.CUGACCCGAUGAUGCC.CGGCA
AP001518.1/137068-136956  CUCUUAUCCAGAGUUGGUGGAGGGA.CAGGCCCGAAGAAACCCCAGCA
AP004603.1/162173-162282  CUCUUAUCAAGAG.UGGUGGAGGGAAUAGGCCCUGCGAAGCC.CGGCA
AL596170.1/192-86         CUCUUAUUAUGAG.UGGUAGAGGGA.CUGGCCCGUUGAAACC.CAGCA
AL596172.1/176254-176136  AUCUUAUCCAGAG.UGGUGGAGGGA.AAUGCCCUGUGAAACC.CAGCA
AL596163.1/172398-172500  UUCUUAUCCAGAG.UGGUGGAGGGAAUCGGCCCAGUGAAACC.CGGCA
AP004829.1/296359-296264  CACUUAUCUAGAG.AGGUGGAGGGA.CUGGCCCUAUGAAGCCUCGGCA
AE007608.1/12720-12617    UCCUUAUCAAGAG.AAACGGAGGGA.CUGGCCCAAUGAUGUUUCAGCA
#=GC SS_cons              <<<<<<<<.......<<<...<<<......>>>......>>>..<<<.

Z99111.2/15242-15342      ACCGACUUAU...........AAAG.CAC..GGUGCUAAUUC.UUGCA
AP001518.1/300422-300310  ACCGCCAAGCAGCAAAUCGC.UUGGAAAA..GGUGCUAAUUC.CUGCA
AP001511.1/149016-149129  ACCCGUUUGUUAGCCAAG...CAAACGAA..GGUGCUAAUUU.CAGCA
AP001518.1/137068-136956  ACCAACACCUGUUAAACA...AAGGUGAAAAGGUGCUAA..C.CUGCA
AP004603.1/162173-162282  ACCUGUAGCAAUUGC......UAUUGAAA..GGUGCUAAAUC.CUACA
AL596170.1/192-86         ACCUUUCAAUUCG........UUGAAAA...GGUGCUAAAUC.CUGCG
AL596172.1/176254-176136  ACCUAAACAAUAAUUCAUUAUGUGUUUAA..GGUGCUAAGUC.AUGCA
AL596163.1/172398-172500  GCGGAGCGC............AAGUUC....UAUGCUAAUUCCGAUCA
AP004829.1/296359-296264  ACA....UCU...........CGA...A...UGUGCCAAUUC.CAGUA
AE007608.1/12720-12617    ACCAAGGUUUU..........AUACUUAU..GGUGCUAAUUC.CAGCA
#=GC SS_cons              <<<<<<..................>>>....>>>>>>.........<<

Z99111.2/15242-15342      GCU.....AGC..GGCUGAGAGAUAAGAU
AP001518.1/300422-300310  AAGC....GAU.GCUUUGAGAGAUGAGAG
AP001511.1/149016-149129  GAAUG..AUUUCAUUCUGGAAGAUAAGCG
AP001518.1/137068-136956  AGGC....GUU.GCCUUGAAAGAUAAGAG
AP004603.1/162173-162282  GACU...UCAU.CGUCUGGAAGAUAAGAG
AL596170.1/192-86         AAGUG..UGAU.GCUUCGAGAGAUAAGAG
AL596172.1/176254-176136  GAACAACGAUUUGUUCUGAAAGAUGAGAA
AL596163.1/172398-172500  GAAG...UAAU.AUUCUGGCAGAUAAGUA
AP004829.1/296359-296264  ACCG....UAA.UGGUUUGAAGAUAAGCA
AE007608.1/12720-12617    GGA....UAUU..UUCUGAAAGAUGAGGA
#=GC SS_cons              <<............>>>>...>>>>>>>>
//
# STOCKHOLM 1.0

#=GF AC  RF00230:0
#=GF ID  T-box:0

AE017001.1/248233-248002  ..AAAGAAGAGUACAUAUUGAGGCAAUUUC....AGAGAGCUUGUGGU
AE017002.1/188131-187860  ..GAGAACGAGUACGUUAUAGAACUGUUCCC..CAGAGAGUUGGCGAU
AE017033.1/112246-111996  .GGAAAAGCAGUAGUUGUUGUUUCCCUGUAA..CAGAGAGCUGGUGGU
AF188935.1/65129-65365    .ACGGACAAAGUAGUGUCUAUUUCCCUAUUU..CAGAGAGCUGAUGGU
AE017038.1/120994-120749  ..AGAGAAGAGUAAAUGAGAUACACAUGGA.AAGAGAAGAAAUGUCUU
AE017002.1/145236-145479  ..AGGGAGGAGUAGUUGAUUGUGAAGCCUCA..CAGAGAGUCGGUGGU
AE017012.1/289721-289478  GAGGACAUGAGUAGUUUUCUACGAUUUUC.....AGAGAGGGAAGCCU
AL596169.1/42587-42347    .AGAGGAAGAGUAGGUCAUUUAUUUUUCUA....AGAGAGAAAGCGGU
AL596169.1/50907-50661    .AAAGGACAACCAAUUUAACGGAAAAUUAU....AGAGAGGAAGGGCU
AP003362.3/336155-335957  ..AAAGAUGAGUAGUUAAUGAUUUGUUUAU...CAGAGAUGUACUGGU
#=GC SS_cons              .............<<<<<<<<..................<<<<<<...

AE017001.1/248233-248002  U...GGUGUGAACAAGUAAUUGU.ACA.G.U.AUGGAA..UGGGCUUU
AE017002.1/188131-187860  U..UGCUGAAAGCCAACGUUCAGUGCG.U.A.ACCGAAA.AUCAUCUC
AE017033.1/112246-111996  C...GGUGUGAACCAGUACAAAA.ACA.A.G.AGCGAAU.UACAGUCC
AF188935.1/65129-65365    U...GGUGUGAAUCAGUAUAAAG.AUAUG.A.CAUGAAA.UUCAUCCU
AE017038.1/120994-120749  A..GGCUGAAAACAUUUCUACAUGGUG.ACUGAUUGAAU.GACACUCU
AE017002.1/145236-145479  U...GCUGAAAACCGAUGGUUCA.C.G.U.C.GACGAAC.AUCGCCCU
AE017012.1/289721-289478  UAGGGUGUGAGCUUCCUAGUAC..GGG.A.U.UAUUACU.UACCACCU
AL596169.1/42587-42347    C...GGUGUAAGCUUUCAAAAA..UAA.U.G.UCUGAAGGUAGCCUUG
AL596169.1/50907-50661    A..GCUGGGAACCUUCUAUUG...GAA.C.U.UA.AAUU.UGGACCAC
AP003362.3/336155-335957  U...GGUGAAAAGUACAACAAA...CA.U.U.AGUGAA....CGCUA.
#=GC SS_cons              ...........>>>>>>.......>>>.>.>.>>>.............

AE017001.1/248233-248002  UGAGCACCAAACCGAACCGAAAGU...............AGUAGGCUU
AE017002.1/188131-187860  CGAGAAGUAGAACCGAAUGUUAC.................AGUAAGUU
AE017033.1/112246-111996  UAGAGCAUCUUUUUCGUAGUAAAGAUAGUAUUUAUCUUUAUGAAGGGA
AF188935.1/65129-65365    GGAGCAUCUUUCAUGACGAAUUAUUA...........CUUGUGAUGAA
AE017038.1/120994-120749  AGAGGUUUCAACUUGAACGGCAUAUAC.........GCUUAGUAGGGA
AE017002.1/145236-145479  UGAGUGCUAAGCUAAAGCAUUU....................GUCUAG
AE017012.1/289721-289478  CUAAACUUUAGCAGUGAACGGUUUU..............UCUAGUAAU
AL596169.1/42587-42347    GAGCAGUUUUCCUGAAAUAAUAGUA.............GGGAAUAACC
AL596169.1/50907-50661    CUUGGAACUUCUAUUAGGAACGUUUU...........UUACUAGUAAU
AP003362.3/336155-335957  ................................................
#=GC SS_cons              ................................................

AE017001.1/248233-248002  UGGCGUUAUAUCCAAACGUUAUUAUGGAUUAGAGAGAUUU........
AE017002.1/188131-187860  CUUACCGGCCGUCCCCCGUUACAAGGAACACGUAUCAUGUUGUACGUU
AE017033.1/112246-111996  AAGACGGUCAGAUGAUCGUUAACAAUGAAGAGAGGUAGA.........
AF188935.1/65129-65365    AGACGGUAGUUUAUACCGUUAACAAAUAGAGUGGUGA...........
AE017038.1/120994-120749  UGAACGCACAUUUAAGCGUUAUUAAAAAAGUGGAAGC...........
AE017002.1/145236-145479  GCUUAGACGGUAGCUCCGUUAUUAGCUAGAUCCAUUUAUGGAUCAC..
AE017012.1/289721-289478  UGCUAACGGACAACACCGUUAUGUUGAACUUGAGCAAUUAA.......
AL596169.1/42587-42347    GGUAGAUCUCGUCUAUCGUUAACACAAUGAAGUGCCUACA........
AL596169.1/50907-50661    AAUAGACGGAUCGCUCCGUUACAGGCGACAAGAGUGAAGUAGUU....
AP003362.3/336155-335957  ................CUUUAUGCACAACUGUAUAGUCGAUUUAAAGU
#=GC SS_cons              ................................................

AE017001.1/248233-248002  .........................CACAGUAGUGAAAUAAUUAGGGU
AE017002.1/188131-187860  GCAAACCCGUAUACAUAUAGAUUUAUUUCUACAUGUGUAAAUUAGGGU
AE017033.1/112246-111996  .........................CGAAAGAAGUCUACAACUAGGGU
AF188935.1/65129-65365    ............................AGUUUCUUCACAACUAGGGU
AE017038.1/120994-120749  ............................AUACGUGCUUCAAUUAGGGU
AE017002.1/145236-145479  ..................UGAGGCAAGAGUAUUCUUGCAAAGAAGGGU
AE017012.1/289721-289478  .......................CAAUUAUGUUAAUUGGAACAAGGGU
AL596169.1/42587-42347    .........................UUUCUUAUUGUAGGUAAAAAGGU
AL596169.1/50907-50661    .....................AAUUUUAGCUAUUUCUGAAUCUUGGGU
AP003362.3/336155-335957  G..............AUAAAUGUGUUGAAUUGCAUUUAUAACUAGGGU
#=GC SS_cons              ...........................................<<<<.

AE017001.1/248233-248002  GGUACCACGGUCC.......AUUCGUCCCUAUAGUUUUUGG.GAUGAA
AE017002.1/188131-187860  GGUAUCGCGGGUAAAU.AUAACUCGUCCCUUUCUUUAGGGA.CGAGUU
AE017033.1/112246-111996  GGUACCGCGAUAAA......UAUCGUCCCUACUGAUUGCAU.CAGUAG
AF188935.1/65129-65365    GGUACCGCGAUCAU.....UUAUCGUCCUACAUGAUGUAGG.GACGUU
AE017038.1/120994-120749  GGCACCACGGGUAUAA.UACUCUCGUCCCUACUGUUCAAAC.AGUAGA
AE017002.1/145236-145479  GGUACCGCGAAAUC......UUUCGUCCCUUCAGCACAUAGCUGGAGU
AE017012.1/289721-289478  GGAACCACGAAUUCA...ACACUCGUCCCUUUUUACGGGAU.GAGUGU
AL596169.1/42587-42347    GGUACCGCGAAUAAUACUCUUUUCGUCCUUUUAUUAGGAUG.AGAAGA
AL596169.1/50907-50661    GGAACCACGAGCAUA....AACUCGUCCCUUGACAACAGGA.GGGAUG
AP003362.3/336155-335957  GGUACCGCGAUAAC......GUUCGUCCCUUUUGAGGAUGG.GCGUUU
#=GC SS_cons              ......<<<<............>>>>>>>>..................

AE017001.1/248233-248002  UGGGCUUUUUUGUUU
AE017002.1/188131-187860  UUUUGUGUUCUUA..
AE017033.1/112246-111996  GGAUUUUUUGUACAA
AF188935.1/65129-65365    UUUUGUUGUCAAAAU
AE017038.1/120994-120749  GGCGGGAGUUUUUUU
AE017002.1/145236-145479  GUGGACGUAGGAUUU
AE017012.1/289721-289478  UUUUUAUUUUGAGAA
AL596169.1/42587-42347    GUUUUUUAUUUUG..
AL596169.1/50907-50661    GGUUUUUUAUUUUGC
AP003362.3/336155-335957  UUUAUUUUUUAAUAA
#=GC SS_cons              ...............
//
# STOCKHOLM 1.0

#=GF AC  RF00230:1
#=GF ID  T-box:1

AE017001.1/248233-248002  .AAAGAAGAGUACAUAUUGAGGCAAUUUC....AGAGAGCUUGUGGUU
AE017028.1/222027-221756  .GAGAACGAGUACGUUAUAGAACUGUCCCC..CAGAGAGUUGGCGAUU
AE017038.1/176480-176232  AGGGGAAGAGUAUAACAAGAAACGUCUUCAG..AGAGGAGAAUCAUUA
AE017012.1/276630-276387  .AGAGAAGAGUAGCUUACAAAAUCGCCAUAUAGGGAGAGAAUGUCGUA
AE017028.1/41743-41995    .GAAGAAGAGUACACAUGAUGAACAUGUC....AGAGAGCUGAUGGUU
AE017002.1/145236-145479  .AGGGAGGAGUAGUUGAUUGUGAAGCCUCA..CAGAGAGUCGGUGGUU
AE017007.1/181315-181066  GGAAAAGCACUAGUUGUUGUUUCCCUGUAA..CAGAGAGCUGGUGGUU
AE017001.1/297992-298250  GUAAGAAGAGUACGUAUAUUGGAGACGUUA..CAGAGAGCCGGGAAUA
AL596169.1/99976-99747    ACGGACGAAGUAGUUGCUUAUUCUUAUUCC..UAGAGAGCUAGUGGUU
AL596169.1/134070-133812  GAAGAGUAAGUAGCAUGAUGAAAGUUUUU....AGAGAGCUGACGGUU
#=GC SS_cons              ............<<<<<<<<..................<<<<<<....

AE017001.1/248233-248002  .GGUGUGAACAAGUAAUUGU...ACAGU.AUGGAA..UGGGCUUUUGA
AE017028.1/222027-221756  UGCUGAAAGCCAACGUUCAGU..GCGUA.GCCGAAA.AUCAUCUCCGA
AE017038.1/176480-176232  .GCUGGGAGAUUCUCUAGAUAG.UUAUG.UUAGAAGGUAGCCCUGGAG
AE017012.1/276630-276387  GACUGAAAGCAUUCUUAUGGUAGACGAA.AGUGAA..UUCACCUCUGG
AE017028.1/41743-41995    .GGUGCGAAUCAGUAUGGAA...UUGAU.GUGGAA..UGGGCUUCGGA
AE017002.1/145236-145479  .GCUGAAAACCGAUGGUUCA...C.GUC.GACGAAC.AUCGCCCUUGA
AE017007.1/181315-181066  .GGUGCGAACCAGUACAUAA...ACAAG.AGCGAAU.UACAGUCCUAG
AE017001.1/297992-298250  GGUGGGAGCCCGGUACGUGC...CAUAU.ACGGAA..UGGGCUUACGA
AL596169.1/99976-99747    .GGUGGAAACUAGUAGAGA....UAAGUAGACGAAU.UACAUCCCGGA
AL596169.1/134070-133812  .GGUGAAAGUCAGUAGCGGA...CAUGA.UGUGAA..UGGACUUCUGA
#=GC SS_cons              ........>>>>>>.........>>>>>.>>>................

AE017001.1/248233-248002  GCACCAAACCGAACCGAAAGU...........................
AE017028.1/222027-221756  GAAGUAGAACCGAAUGUUGC............................
AE017038.1/176480-176232  CAUCUUUUCUGAACGGAAUAGU..........................
AE017012.1/276630-276387  AGUUGACGCCAGGACCAUGUAUA.........................
AE017028.1/41743-41995    GCUUCCAAACCGAAACGAAAGAAGUAGGCUUUGGCGACAUGAUCUCAU
AE017002.1/145236-145479  GUGCUAAGCUAAAGCAUUU.............................
AE017007.1/181315-181066  AGCAUCUUUUUCGUAGUAAAGAUAGUAU....................
AE017001.1/297992-298250  GAGGUAUGCUGAACAAUUAUU...........................
AL596169.1/99976-99747    GUCACGCUGCACAGGAUA..............................
AL596169.1/134070-133812  GCUCUGGUUUGAAAAGGAAUUUCC........................
#=GC SS_cons              ................................................

AE017001.1/248233-248002  ...............AGUAGGCUUUGGCGUUAUAUCCAAACGUUAUUA
AE017028.1/222027-221756  ................AGUAAGUUCUUACCGGCUGUCCCCCGUUACAA
AE017038.1/176480-176232  ..............UCUCAUUAGGAAAAGACGGAUUUGUCCGUUAUCA
AE017012.1/276630-276387  .............UGUAAAGGCGUUCCGGUCAGAAUUGAUCGUUAUAA
AE017028.1/41743-41995    CGAUACAAGAGACACGUAUUGUUUUUGAUACGGUAAAGUGCGUUACGU
AE017002.1/145236-145479  ..................GUCUAGGCUUAGACGGUAGCUCCGUUAUUA
AE017007.1/181315-181066  ........UGUCUUUAUGAAGGGAAAGACGGUCAGAUGAUCGUUAACA
AE017001.1/297992-298250  ................UUCAGUAGGCAACCCGGGUUCCGCCGUUACAA
AL596169.1/99976-99747    ...................AUGGUGCGGCCGGUGUUGAGCCGUUAUUU
AL596169.1/134070-133812  ............UUAGUAGGAUGCAGCGAUUAGGCCUUAUCGUUACAC
#=GC SS_cons              ................................................

AE017001.1/248233-248002  UGGAUUAGAGAGAUUU................................
AE017028.1/222027-221756  GGAACACGUAUCAUGUUGUACGUUGCAGAGCCGUAUACAUAUAGACUC
AE017038.1/176480-176232  AGUUAAGAGUAUAAGCAAA..........................UUC
AE017012.1/276630-276387  CUAAUGAGUGGGCAG.................................
AE017028.1/41743-41995    UCGUA...........................................
AE017002.1/145236-145479  GCUAGAUCCAUUUAUGGAUCAC....................UGAGGC
AE017007.1/181315-181066  AUGAAGAGAGGUAGA.................................
AE017001.1/297992-298250  GGAUAAGGUAUAAAUUUUGUACCUGA............ACAAAGCGGG
AL596169.1/99976-99747    UUUGAAGUAGGA....................................
AL596169.1/134070-133812  AAGGCGCCCAUUCGGAAUUUGGAUGG.............AUUAAGUGA
#=GC SS_cons              ................................................

AE017001.1/248233-248002  .CACAGUAGUGAAAUAAUUAGGGUGGUACCACGGUCC.......AUUC
AE017028.1/222027-221756  AUUUCUACAUGUAUAAAUUAGGGUGGUAUCGCGGGUAAAU.AUAACUC
AE017038.1/176480-176232  CUGGAUUUGUUUGUAAAUAAAGGUGGUACCGCGAUGUC......CCUC
AE017012.1/276630-276387  ..ACAUGUUCUGUCAAUUUAGGGUGGUACCGCGAAUUU.....ACCUC
AE017028.1/41743-41995    ............ACGAAUUAAGGUGGCACCACGGGAGU......ACCC
AE017002.1/145236-145479  AAGAGUAUUCUUGCAAAGAAGGGUGGUACCGCGAAAUC......UUUC
AE017007.1/181315-181066  .CGAAAGAAGUCUACAACUAGGGUGGUACCGCGAUAAA......UAUC
AE017001.1/297992-298250  AUGCUUUUGCAUCCAACACGAGGUGGUACCGCGGUAUAU....UUAUC
AL596169.1/99976-99747    ....UUUUUUCCUAAAAGUAGGGUGGUACCACGUUAAUUAA....UAC
AL596169.1/134070-133812  ACUGUUUUUGCAGUUAAUCAAGGUGGUACCACGGGUC.......UCUC
#=GC SS_cons              ...................<<<<.......<<<<............>>

AE017001.1/248233-248002  GUCCCUAUAGUUUUUGG.....GAUGAAUGGGCUUUUUUGUUU
AE017028.1/222027-221756  GUCCCUUUCUUUAGGGA.....CGAGUUUUUUGUGUUCUUA..
AE017038.1/176480-176232  GUCCUUUUUUGGAUGAG.....GGACAUUUUUUAUUUUAAGGA
AE017012.1/276630-276387  GUCCCUUUUUGGGAGCG.....AGGUUUUUUUAUUUUUAAAAU
AE017028.1/41743-41995    GUCCUUUCUAUAGGAUG.....AGUACUCCCUUUUUGUGUAUA
AE017002.1/145236-145479  GUCCCUUCAGCACAUAGC....UGGAGUGUGGACGUAGGAUUU
AE017007.1/181315-181066  GUCCCUACUGAUUGGAU.....CAGUAGGGCUUUUUUGUACAA
AE017001.1/297992-298250  GUCCUCUACAUAUUUUC.....GAUAUGUAGAGGAUUUUUUUA
AL596169.1/99976-99747    GUCCCUUCGCUAAACUGUUUAGCGGAGGGGCGUUUUUUAUGUC
AL596169.1/134070-133812  GUCCUUGUCUAGUAUAU.....UUGCUAGGCUUGGAGAGAGGC
#=GC SS_cons              >>>>>>.....................................
//
# STOCKHOLM 1.0

#=GF AC  RF00230:2
#=GF ID  T-box:2

AE017038.1/176480-176232  AGGGGAAGAGUAUAACAAGAAACGUCUUCAG...AGAGGAGAAUCAUU
AE017002.1/188131-187860  .GAGAACGAGUACGUUAUAGAACUGUUCCC...CAGAGAGUUGGCGAU
AE017033.1/112246-111996  GGAAAAGCAGUAGUUGUUGUUUCCCUGUAA...CAGAGAGCUGGUGGU
AE017012.1/276630-276387  .AGAGAAGAGUAGCUUACAAAAUCGCCAUAU.AGGGAGAGAAUGUCGU
AE017028.1/41743-41995    .GAAGAAGAGUACACAUGAUGAACAUGUC.....AGAGAGCUGAUGGU
AE017028.1/179270-179514  GAGGGAGGAGUAGUUGAUUGUGAAGCCUCA...CAGAGAGUCGGUGGU
AE017028.1/42023-42282    GUAAGAAGAGUACGUAUAUUGGAGACGUUA...CAGAGAGCCGGGGAU
AL596169.1/7629-7387      .AGAGAAAAGUAAGAAAAUCCAUGCUAUA..CAGAGAAUUUAUCCCAU
AE016948.1/260670-260899  AGAAAAGCAGUAGAGAAAUAACCACUGUUA...CAGAAAGCUAGUGGC
AE016948.1/46912-47109    AUUAGCCCAGUAGGAAAUAGAUGUUUUGUU...CAGAAAGUCGAUGGU
#=GC SS_cons              ............<<<<<<<<...................<<<<<<...

AE017038.1/176480-176232  A..GCUGGGAGAUUCUCUAGAUAG.UUAUGUUA..GAAGGUAGCCCUG
AE017002.1/188131-187860  U.UGCUGAAAGCCAACGUUCAGU..GCGUAACC..GAAA.AUCAUCUC
AE017033.1/112246-111996  C..GGUGUGAACCAGUACAAAA...ACAAGAGC..GAAU.UACAGUCC
AE017012.1/276630-276387  A.GACUGAAAGCAUUCUUAUGGUAGACGAAAGU..GAA..UUCACCUC
AE017028.1/41743-41995    U..GGUGCGAAUCAGUAUGGAA...UUGAUGUG..GAA..UGGGCUUC
AE017028.1/179270-179514  U..GCUGGAAACCGAUGGUUCA...C.GUCGAC..GAAC.AUCGCCCU
AE017028.1/42023-42282    A.GGUGGGAGCCCGGUGCGGUG..CUAUAUACG..GAA..UGGGCUUA
AL596169.1/7629-7387      UUGGCUGAAAGGAUAAAGAUAGU..CAUAUUUUCCGAAAAGACACUCU
AE016948.1/260670-260899  ...GCUGGAAACUAGUACACGU...UAUUUAUC..GAAU.UACAUUCU
AE016948.1/46912-47109    U..GCUGCGAAUCGAUCAAGU....CUAUUUGU..GAAU.UACACUAA
#=GC SS_cons              ..........>>>>>>.........>>>>>>>>...............

AE017038.1/176480-176232  GAGCAUCUUUUCUGAACGGAAUAGU.......................
AE017002.1/188131-187860  CGAGAAGUAGAACCGAAUGUUAC.........................
AE017033.1/112246-111996  UAGAGCAUCUUUUUCGUAGUAAAGAUAGUAUU................
AE017012.1/276630-276387  UGGAGUUGACGCCAGGACCAUGUAUA......................
AE017028.1/41743-41995    GGAGCUUCCAAACCGAAACGAAAGAAGUAGGCUUUGGCGACAUGAUCU
AE017028.1/179270-179514  UGAGUGCUAAGCUGAAGCGUUU..........................
AE017028.1/42023-42282    CGAGAGGUAUGCUGAACAAUUAUU........................
AL596169.1/7629-7387      CGAGGUUUCUUGUUGAAAACA...........................
AE016948.1/260670-260899  UGAGCUUCUGCCUAC.................................
AE016948.1/46912-47109    UAAGU...........................................
#=GC SS_cons              ................................................

AE017038.1/176480-176232  .................UCUCAUUAGGAAAAGACGGAUUUGUCCGUUA
AE017002.1/188131-187860  ...................AGUAAGUUCUUACCGGCCGUCCCCCGUUA
AE017033.1/112246-111996  ...........UAUCUUUAUGAAGGGAAAGACGGUCAGAUGAUCGUUA
AE017012.1/276630-276387  ................UGUAAAGGCGUUCCGGUCAGAAUUGAUCGUUA
AE017028.1/41743-41995    CAUCGAUACAAGAGACACGUAUUGUUUUUGAUACGGUAAAGUGCGUUA
AE017028.1/179270-179514  .....................GUCUAGGCUUAGACGGUAGCUCCGUUA
AE017028.1/42023-42282    ...................UUCAGUAGGCAACCCGGGUUCCGCCGUUA
AL596169.1/7629-7387      ......................GUAAACAAGAACGUAUUCAGGCGUUA
AE016948.1/260670-260899  ...........................AGGGCACGGGUAACAGCGUUA
AE016948.1/46912-47109    .....................................AGUAACAAUUA
#=GC SS_cons              ................................................

AE017038.1/176480-176232  UCAAGUUAAGAGUAUAAGCAAA..........................
AE017002.1/188131-187860  CAAGGAACACGUAUCAUGUUGUACGUUGCAAACCCGUAUACAUAUAGA
AE017033.1/112246-111996  ACAAUGAAGAGAGGUAGA..............................
AE017012.1/276630-276387  UAACUAAUGAGUGGGCAG..............................
AE017028.1/41743-41995    CGUUCGUA........................................
AE017028.1/179270-179514  UUAGCUAGACUCAUUUAUGGGUCAC....................UGA
AE017028.1/42023-42282    CAAGGAUAAGGUAUAUAUUUUGUACCUGA............AUAAAGC
AL596169.1/7629-7387      ACUGACUUAAGUGAGGAC..............................
AE016948.1/260670-260899  UUUGUUAAGAGGUAUAUAGUAUUUU....................AAA
AE016948.1/46912-47109    CAUAAUACAUAAGCGAGAA.............................
#=GC SS_cons              ................................................

AE017038.1/176480-176232  UUCCUGGAUUUGUUUGUAAAUAAAGGUGGUACCGCGAUGUC.......
AE017002.1/188131-187860  UUUAUUUCUACAUGUGUAAAUUAGGGUGGUAUCGCGGGUAAAU...AU
AE017033.1/112246-111996  ....CGAAAGAAGUCUACAACUAGGGUGGUACCGCGAUAAA.......
AE017012.1/276630-276387  .....ACAUGUUCUGUCAAUUUAGGGUGGUACCGCGAAUUU.......
AE017028.1/41743-41995    ...............ACGAAUUAAGGUGGCACCACGGGAGU.......
AE017028.1/179270-179514  GGCAAGAGUAUUCUUGCAAAGAAGGGUGGUACCGCGAAAUC.......
AE017028.1/42023-42282    GGGAUGCUUUUGCGUCCAACAUGAGGUGGUACCACGGUAAAU......
AL596169.1/7629-7387      ....UUAUUAAUAGUUCUAAUUAGGGUGGUACCACGGGUGUAAAUAAA
AE016948.1/260670-260899  UAAACUAAACUAUGUAUAAAUUUGGGUGGUACCACGAGAA........
AE016948.1/46912-47109    ....GCAAGUAAGCUUCUAAUUAAGGUGGUACCGCGGAGAG.......
#=GC SS_cons              ......................<<<<.......<<<<...........

AE017038.1/176480-176232  .CCUCGUCCUUUUUUGGAUGAG.GGACAUUUUUUAUUUUAAGGA
AE017002.1/188131-187860  AACUCGUCCCUUUCUUUAGGGA.CGAGUUUUUUGUGUUCUUA..
AE017033.1/112246-111996  .UAUCGUCCCUACUGAUUGCAU.CAGUAGGGAUUUUUUGUACAA
AE017012.1/276630-276387  ACCUCGUCCCUUUUUGGGAGCG.AGGUUUUUUUAUUUUUAAAAU
AE017028.1/41743-41995    .ACCCGUCCUUUCUAUAGGAUG.AGUACUCCCUUUUUGUGUAUA
AE017028.1/179270-179514  .UUUCGUCCCUUCAGCACAUAGCUGGAGUGUGGACGUAGGAUUU
AE017028.1/42023-42282    UUAUCGUCCUCUACAUAUUUUC.GAUAUGUAGAGGACUUUUUUA
AL596169.1/7629-7387      CUCUCGUCCCUUGUUUUUAUAA.CAAGUGACGGGGGUUUUUCUU
AE016948.1/260670-260899  .AUUCGUCCCUAAGUCGUUUCG.ACGACUUAGGGAUUUUUUGUA
AE016948.1/46912-47109    .AUUCGUCCUUAUUCUUUAAGG.AUGAAUCUCUCUUUUUAUGUA
#=GC SS_cons              ...>>>>>>>>.................................
//
# STOCKHOLM 1.0

#=GF AC  RF00230:3
#=GF ID  T-box:3

AE017002.1/174913-175177  GCAAGAAGAGUACGUAUAUUUGAUGCGUU.....CAGAGAGCUGGGGU
AE017029.1/241355-241630  AAAGGACGAGUAGUAGUAGGACGUAGUCU.....AAGCGAGUCAGGGG
AE017012.1/106690-106445  .AGAGAAGAGUAAAUGAGACACACAUGGA...AAGAGAAGGAAUGUCU
AE017028.1/179270-179514  GAGGGAGGAGUAGUUGAUUGUGAAGCCUCA....CAGAGAGUCGGUGG
AE017007.1/181606-181356  GAGAUCACAGUAGUGGUUAGUCUUACUGUA...ACAGAGAGCUGGUGG
AL596169.1/7629-7387      .AGAGAAAAGUAAGAAAAUCCAUGCUAUA...CAGAGAAUUUAUCCCA
AL596169.1/134070-133812  GAAGAGUAAGUAGCAUGAUGAAAGUUUUU......AGAGAGCUGACGG
AL591980.1/61532-61313    GAAUUGG.AGUAGUAAUCUGCAUAUUUUGAUGUGAAGAGAGCUGACGG
AE016948.1/260670-260899  AGAAAAGCAGUAGAGAAAUAACCACUGUUA....CAGAAAGCUAGUGG
AE008470.1/7251-7489      .UCAGAAAAGUAAUCAUACAAACUUUUU.......AGAGAGUCUGUGG
#=GC SS_cons              ............<<<<<<<<....................<<<<<<..

AE017002.1/174913-175177  UA.GGUGGGAGCCCGGUACGAUA.AAAUA.U.ACA..GAA...UGGGC
AE017029.1/241355-241630  U..GGUGUGAGCCUGAUACGAAG..CCUA.U.UAU..GAA....GAAC
AE017012.1/106690-106445  UA.GGCUGAAAACAUUUCUGCAUG.AUGACUGAUU..GAAU..GACAC
AE017028.1/179270-179514  UU..GCUGGAAACCGAUGGUUCA..C.GU.C.GAC..GAAC..AUCGC
AE017007.1/181606-181356  UU..GGUGUGAACCAGUACAGGG..AUAA.U.CAU..GAAU..UACAG
AL596169.1/7629-7387      UUUGGCUGAAAGGAUAAAGAUAGU.CAUA.U.UUUCCGAAAA.GACAC
AL596169.1/134070-133812  UU..GGUGAAAGUCAGUAGCGGA..CAUG.A.UGU..GAA...UGGAC
AL591980.1/61532-61313    UU..GGUGCAAGUCAGUCACAAA..AUCU.G.GAU..GAACU.UACCA
AE016948.1/260670-260899  C...GCUGGAAACUAGUACACGU..UAUU.U.AUC..GAAU..UACAU
AE008470.1/7251-7489      UA..GCUGAAAACAGAUAAGUGG...CAA.U.GAU..GAAAAUUGGGC
#=GC SS_cons              ...........>>>>>>........>>>>.>.>>>.............

AE017002.1/174913-175177  UUGCGAGAGGUAUGUUGAACAUUG..................UAGUAG
AE017029.1/241355-241630  CUCCUGGAGUUGCUAACCGAAAUCCUUUACA.....GGAAAGUAGACU
AE017012.1/106690-106445  UCUAGAGGUUUCAACUUGAACGGCAUAUAU......GCUUAGUAGGGA
AE017028.1/179270-179514  CCUUGAGUGCUAAGCUGAAGCGUUU.................GUCUAG
AE017007.1/181606-181356  UCUUGGAGCAUCUUUUUCGUAAUAAAGAUAGUUUGUCUUUAUGAGGAA
AL596169.1/7629-7387      UCUCGAGGUUUCUUGUUGAAAACA...................GUAAA
AL596169.1/134070-133812  UUCUGAGCUCUGGUUUGAAAAGGAAUUUCC......UUAGUAGGAUGC
AL591980.1/61532-61313    UGGAGCUUGGGUGUA.................................
AE016948.1/260670-260899  UCUUGAGCUUCUGCCUAC..............................
AE008470.1/7251-7489      UGAAUGCUAUUUAGAAUUUGAAAUUAUAAAA....AUUCGGUAAGCAC
#=GC SS_cons              ................................................

AE017002.1/174913-175177  GCAAUCCGGGUUCCGCCGUUAAAAGGAUAGAGUAUCGGAAUUAUUCCU
AE017029.1/241355-241630  UAGCCGGGAACUUCGCCGUUACAAGAAGAACAGUAUCGAGAUAUUUCA
AE017012.1/106690-106445  UGAACGCAUAUUUAAGCGUUAUUAAAAAAGUGGAAGC...........
AE017028.1/179270-179514  GCUUAGACGGUAGCUCCGUUAUUAGCUAGACUCAUUUAUGGGUCAC..
AE017007.1/181606-181356  AAAGCGGUCAAUUGAUCGUUAACAGUGAAGAGAGGUAGAC........
AL596169.1/7629-7387      CAAGAACGUAUUCAGGCGUUAACUGACUUAAGUGAGGAC.........
AL596169.1/134070-133812  AGCGAUUAGGCCUUAUCGUUACACAAGGCGCCCAUUCGGAAUUUGGAU
AL591980.1/61532-61313    ...UCCCCGUUUUCCGCGUUAAGGAAUUGAUAAGUUGA..........
AE016948.1/260670-260899  AGGGCACGGGUAACAGCGUUAUUUGUUAAGAGGUAUAUAGUAUUUU..
AE008470.1/7251-7489      ACCUUACAGUGCAUCUCGUUAUUGCGAGACUGAGCGAUA.........
#=GC SS_cons              ................................................

AE017002.1/174913-175177  GUA......CUUGUACAAGUGGGAUUUAUCAAUCCAAUUGAGGUGGUA
AE017029.1/241355-241630  UCUCCGUAUUGUAUAAGUGAGCAACCUCUGUUGCUAAUUUGGGUGGUA
AE017012.1/106690-106445  ........................AUACGUGCUUCAAUUAGGGUGGCA
AE017028.1/179270-179514  ..............UGAGGCAAGAGUAUUCUUGCAAAGAAGGGUGGUA
AE017007.1/181606-181356  ....................GGAAAGUUAGUCUACAACUAGGGUGGUA
AL596169.1/7629-7387      .....................UUAUUAAUAGUUCUAAUUAGGGUGGUA
AL596169.1/134070-133812  GG.........AUUAAGUGAACUGUUUUUGCAGUUAAUCAAGGUGGUA
AL591980.1/61532-61313    ......................GUGGUCAAACACUAAUGUGGGUGGUA
AE016948.1/260670-260899  ..............AAAUAAACUAAACUAUGUAUAAAUUUGGGUGGUA
AE008470.1/7251-7489      .....................GGGAAAUUCCCUAUAAUUGAGGUGGUA
#=GC SS_cons              .......................................<<<<.....

AE017002.1/174913-175177  CCCCGGUAUUUACAUUACAUAUAUCGUCCUCUACAUGCAUAU.UUGCG
AE017029.1/241355-241630  CCGCGGAACCAAA.....GCCUUUCGUCCCAGUUUUUUGGGA.AAGAA
AE017012.1/106690-106445  CCACGGGUAUAA......UACUCUCGUCCCUACUGUUUAAAC.AGUAG
AE017028.1/179270-179514  CCGCGAAAUC...........UUUCGUCCCUUCAGCACAUAGCUGGAG
AE017007.1/181606-181356  CCGCGAUAAA...........UAUCGUCCCUACUGAUUUAUU.CAGUA
AL596169.1/7629-7387      CCACGGGUGUAAAU...AAACUCUCGUCCCUUGUUUUUAUAA.CAAGU
AL596169.1/134070-133812  CCACGGGUC............UCUCGUCCUUGUCUAGUAUAU.UUGCU
AL591980.1/61532-61313    CCGCGGGAGAAGC.....AUCUCUCGUCCCAUGGCGAUAAGC.CGUUG
AE016948.1/260670-260899  CCACGAGAA............AUUCGUCCCUAAGUCGUUUCG.ACGAC
AE008470.1/7251-7489      CCGCGCAUC.............GACGUCCUCACACAAGUUUU.UUGUG
#=GC SS_cons              ..<<<<.................>>>>>>>>.................

AE017002.1/174913-175177  UGUAGGGGACUUUUUU
AE017029.1/241355-241630  GGGCUUUUUUUGUUGG
AE017012.1/106690-106445  AGGCGGGAGUUUUUUU
AE017028.1/179270-179514  UGUGGACGUAGGAUUU
AE017007.1/181606-181356  GGGACUUUUUGUAUUU
AL596169.1/7629-7387      GACGGGGGUUUUUCUU
AL596169.1/134070-133812  AGGCUUGGAGAGAGGC
AL591980.1/61532-61313    GGAUGUAGGGAUUUUU
AE016948.1/260670-260899  UUAGGGAUUUUUUGUA
AE008470.1/7251-7489      UGAGGAUUUUUUUGAU
#=GC SS_cons              ................
//
# STOCKHOLM 1.0

#=GF AC  RF00230:4
#=GF ID  T-box:4

AE017038.1/176480-176232  AGGGGAAGAGUAUAACAAGAAACGUCUUCAG....AGAGGAGAAUCAU
AE017012.1/106690-106445  .AGAGAAGAGUAAAUGAGACACACAUGGA...AAGAGAAGGAAUGUCU
AE017028.1/41743-41995    .GAAGAAGAGUACACAUGAUGAACAUGUC......AGAGAGCUGAUGG
AE017007.1/181315-181066  GGAAAAGCACUAGUUGUUGUUUCCCUGUAA....CAGAGAGCUGGUGG
AL591980.1/26893-26637    GAAGAGUAAGUAGCAUGAUGAAAGUUUUU......AGAGAGCUGACGG
AL596169.1/50907-50661    AAAGGACAACCAAUUUAACGGAAAAUUAU......AGAGAGGAAGGGC
AL591980.1/61532-61313    GAAUUGG.AGUAGUAAUCUGCAUAUUUUGAUGUGAAGAGAGCUGACGG
AE016747.1/155449-155637  AUUGAUAGAGUAAUCAUUAUAUUUUGUAGCA.AGCAGAAAGCUAAUGG
AP004826.1/178432-178626  AAAGAAAUAGUAGCAGAUAUGAAACGUAGCA.AAUAGAAAGCUAAUGG
AE007811.1/6864-6593      AUAGAAGUAGUAGCUAUUAAGAAAUUGGUU...AAAGCGAGUCGGGUU
#=GC SS_cons              ............<<<<<<<<....................<<<<<<..

AE017038.1/176480-176232  UA.GCUGGGAGAUUCUCUAGAUAGUUAU.G.UUAGAAGGUAGCCCUGG
AE017012.1/106690-106445  UAGGCUGAAAACAUUUCUGCAUG.AUGACUGAUUGAAU.GACACUCUA
AE017028.1/41743-41995    UU.GGUGCGAAUCAGUAUGGAA..UUGA.U.GUGGAA..UGGGCUUCG
AE017007.1/181315-181066  UU.GGUGCGAACCAGUACAUAA..ACAA.G.AGCGAAU.UACAGUCCU
AL591980.1/26893-26637    UU.GGUGAAAGUCAGUAGCGGA..CAUG.A.UGUGAA..UGGACUUCU
AL596169.1/50907-50661    UAGCUGGGAACCUUCUAUUG....GAAC.U.UA.AAUU.UGGACCACC
AL591980.1/61532-61313    UU.GGUGCAAGUCAGUCACAAA..AUCU.G.GAUGAACUUACCAUGGA
AE016747.1/155449-155637  UA.GAUGUAAAUUAGCACAUG...AUAA.UAGAUGAAA.UGGGCUUUC
AP004826.1/178432-178626  GU.GAUGGGAAUUAGCACGCC...AUAUCU.UGUGAAU.UGGACUUUG
AE007811.1/6864-6593      ...AGUGUGAGCCGGUACCGUAG.CUUG.U.AGUGAA..UGGAUCUAU
#=GC SS_cons              ..........>>>>>>........>>>>.>.>>>..............

AE017038.1/176480-176232  AGCAUCUUUUCUGAACGGAAUAGU........................
AE017012.1/106690-106445  GAGGUUUCAACUUGAACGGCAUAUAU......................
AE017028.1/41743-41995    GAGCUUCCAAACCGAAACGAAAGAAGUAGGCUUUGGCGACAUGAUCUC
AE017007.1/181315-181066  AGAGCAUCUUUUUCGUAGUAAAGAUAGUAU..................
AL591980.1/26893-26637    GAGCUCUGAUCUGAAAGGAUUUUCU.......................
AL596169.1/50907-50661    UUGGAACUUCUAUUAGGAACGUUUU.......................
AL591980.1/61532-61313    GCUUGGGUGUA.....................................
AE016747.1/155449-155637  AAAUUUU.........................................
AP004826.1/178432-178626  GAAAACAAUUGAAUGAGUU.............................
AE007811.1/6864-6593      GAGACGAUGCUGUGAAAGAGGUAU........................
#=GC SS_cons              ................................................

AE017038.1/176480-176232  ................UCUCAUUAGGAAAAGACGGAUUUGUCCGUUAU
AE017012.1/106690-106445  ..............GCUUAGUAGGGAUGAACGCAUAUUUAAGCGUUAU
AE017028.1/41743-41995    AUCGAUACAAGAGACACGUAUUGUUUUUGAUACGGUAAAGUGCGUUAC
AE017007.1/181315-181066  ..........UGUCUUUAUGAAGGGAAAGACGGUCAGAUGAUCGUUAA
AL591980.1/26893-26637    ...............UAGUAGGAUACAGCGAUUAGGCCUUAUCGUUAC
AL596169.1/50907-50661    ...............UUACUAGUAAUAAUAGACGGAUCGCUCCGUUAC
AL591980.1/61532-61313    .............................UCCCCGUUUUCCGCGUUAA
AE016747.1/155449-155637  ..................................AACUUAAUCAUUAA
AP004826.1/178432-178626  ......................UUGAAAGUGAACAUGAAUUAUGUUAA
AE007811.1/6864-6593      ................UCAGUAGUAGCAUUCGGAAAGUCUACCGUUAA
#=GC SS_cons              ................................................

AE017038.1/176480-176232  CAAGUUAAGAGUAUAAGCAAA...........................
AE017012.1/106690-106445  UAAAAAAGUGGAAGC.................................
AE017028.1/41743-41995    GUUCGUA.........................................
AE017007.1/181315-181066  CAAUGAAGAGAGGUAGA...............................
AL591980.1/26893-26637    ACAAGGCGCCCAUUCGAAAUUUGGAUGG..............AUUAAG
AL596169.1/50907-50661    AGGCGACAAGAGUGAAGUAGUU..........................
AL591980.1/61532-61313    GGAAUUGAUAAGUUGA................................
AE016747.1/155449-155637  AGUGAACAUA......................................
AP004826.1/178432-178626  C...............................................
AE007811.1/6864-6593      AAGGACAGGAUAUCGAAAUUGUAAUUUCCGUAUCUGUAAAAGAUGAUC
#=GC SS_cons              ................................................

AE017038.1/176480-176232  UUCCUGGAUUUGUUUGUAAAUAAAGGUGGUACCGCGAUGUC......C
AE017012.1/106690-106445  .......AUACGUGCUUCAAUUAGGGUGGCACCACGGGUAUAA.UACU
AE017028.1/41743-41995    ...............ACGAAUUAAGGUGGCACCACGGGAGU......A
AE017007.1/181315-181066  ....CGAAAGAAGUCUACAACUAGGGUGGUACCGCGAUAAA......U
AL591980.1/26893-26637    UGAACUGUUUUUACAGUUAAUCAAGGUGGUACCACGGGUC.......U
AL596169.1/50907-50661    AAUUUUAGCUAUUUCUGAAUCUUGGGUGGAACCACGAGCAUA....AA
AL591980.1/61532-61313    .....GUGGUCAAACACUAAUGUGGGUGGUACCGCGGGAGAAGCAUCU
AE016747.1/155449-155637  ............UAUGUUAACUAAGGUGGCACCACGGUAA........
AP004826.1/178432-178626  .....................UAAGGUGGCACCACGGUAA........
AE007811.1/6864-6593      UAUUUAUUUACUUAGAUUAAAAUGGGUGGCACCACGGACCA......C
#=GC SS_cons              ......................<<<<.......<<<<...........

AE017038.1/176480-176232  CUCGUCCUUUUUUGGAUGAGGGACAUUUUUUAUUUUAAGGA
AE017012.1/106690-106445  CUCGUCCCUACUGUUUAAACAGUAGAGGCGGGAGUUUUUUU
AE017028.1/41743-41995    CCCGUCCUUUCUAUAGGAUGAGUACUCCCUUUUUGUGUAUA
AE017007.1/181315-181066  AUCGUCCCUACUGAUUGGAUCAGUAGGGCUUUUUUGUACAA
AL591980.1/26893-26637    CUCGUCCUUGUCUAGUAUAUUUGCUAGGCUUGGAGAGAGGC
AL596169.1/50907-50661    CUCGUCCCUUGACAACAGGAGGGAUGGGUUUUUUAUUUUGC
AL591980.1/61532-61313    CUCGUCCCAUGGCGAUAAGCCGUUGGGAUGUAGGGAUUUUU
AE016747.1/155449-155637  CGCGUCCUUAUAGAAUGAUAGCGUUAUUGUGGUUUUUUUGA
AP004826.1/178432-178626  CGCGUCCUUACAGGUAUAUGCGUUAUGUGGUGUCUUUUUAU
AE007811.1/6864-6593      UUCGUCCCAUACAAAGGAACGAAGUGGUCUUUUUGCGUUUU
#=GC SS_cons              .>>>>>>>>................................
//
# STOCKHOLM 1.0

#=GF AC  RF00059:0
#=GF ID  THI:0

AP005220.1/194416-194530  CCCAACCCCCACGGGCGCCCGGGGC.....ACCGGGCUGAGAUUGCGC
AD000014.1/41361-41472    GGGUACCCACGCGGGAGCGCAACGCCG...AGUGCGCUGAGAGGACGG
AE016928.1/199416-199321  GUAAAGACAAAGGGGUGCCCCCAAA.....GAGGGGCUGAGAUU....
D64004.1/130312-130407    UGCCAUAGCUAGGGGUGUCUAGAAA.....GCUAGGCUGAGAA.....
AP004594.1/205048-204933  AGCAACUACUAGGGGUGCCCAGUACUAUG.UGUGGGCUGAGAGGAAAG
AE007789.1/9122-9015      AUAUAGUUAACGGGGAGCCUGUAG.......ACAGGCUGAGAGUGGAA
AP002998.2/95169-95056    GCCCAUCCACAGGGGUGCUCCGUACGG...UCGGGGCUGAGACGGGGG
AL162753.2/24984-25083    ACAUCGAAACAGGGGUGCUGCCUGAUGUUCAGGCGGCUGAGAA.....
AL139075.2/104313-104417  AACAUAAAUGACGGGAGCUUGUGU......AACAGGCUGAGAGUAAGC
AE012556.1/212138-212040  ACUUUGAAGCGGGGGUACCGUAGCCAAG..CUGCGGUUGAGAC.....
#=GC SS_cons              .....<<<<<<<<<..<<<<<<.........>>>>>>.....<<<<<<

AP005220.1/194416-194530  UGCCUUGCC.GCGCAAGGACCGUAUGA.ACCUG..UCUGGUUAGCACC
AD000014.1/41361-41472    CUCGG....GGCCGUC.GACCGUACGA.ACCUGA..CCGGGUAAUGCC
AE016928.1/199416-199321  ................AUACCCUAGGA.ACCUGA.GGCAGUUAGCACU
D64004.1/130312-130407    ................AAACCCUUAGA.ACCUGAGACUGGGUAAUACC
AP004594.1/205048-204933  CACCU.....ACUUUCCGACUCUUAUGGACCUGA.UCUGGUUAAUACC
AE007789.1/9122-9015      UGU......GAUUCCA.GACCCUCAUA.ACCUGA.UUUGGAUAAUGCC
AP002998.2/95169-95056    CGGCAA....GCCCACAGACCCU.AGA.AGCUGA.UCUGGGUAAUACC
AL162753.2/24984-25083    ................AUACCCUUUAC.ACCCGA.UCGGGAUAAUACC
AL139075.2/104313-104417  UAA......AAGCUUA.GACCGA.....ACCGGA.UCUGGAUAAUACC
AE012556.1/212138-212040  ................ACACCCUUCGA.ACCUGA.UCCGGUUUACACC
#=GC SS_cons              ...........>>>>>>..>>>>......<<<<...<<<<<....>>>

AP005220.1/194416-194530  AGCGAAGGAAGAGAGGCCUACAAGGACA
AD000014.1/41361-41472    GGCGUAGGGA.GUUGCAAAUGACCAUCA
AE016928.1/199416-199321  GACGUAGGGA.UUGUGUUUCUUUCUUAU
D64004.1/130312-130407    AGCGGAGGGA.AGCUCACCAUUCGAGGA
AP004594.1/205048-204933  AGCGUAGGGA.AGUAGUCAAUAAUUUUG
AE007789.1/9122-9015      AACGUAGGGAGUUAAUGCAUCAUGUUUG
AP002998.2/95169-95056    AGCGGAGCGAGGCGGGCGAUGUUUUCAG
AL162753.2/24984-25083    UGCGUGGGGA.GUUUUCACGGAUUCUGC
AL139075.2/104313-104417  AGCGUCGGGAAGAUUUAUAAAUUUCAAU
AE012556.1/212138-212040  GGCGUAGGAAAGCUUCGUGGACCGCGCC
#=GC SS_cons              >>..>>>>...>>>>>............
//
# STOCKHOLM 1.0

#=GF AC  RF00059:1
#=GF ID  THI:1

AE014730.1/8718-8610      GGAGUUGACA.CGGGAGCUGCCGUU...............GGGCGGCU
AE007806.1/8808-8702      AAUAUUUUUCAGGGGAGCUUGUUU.................UCAGGCU
AE005876.1/3727-3622      GUCUGUUCACCGGGGGGCCGCUCG.................CGCGGCU
AE017257.1/202839-202737  UACACGCAUUAGGGGUGCUCUAG..................AAAAGCU
AE001547.1/1336-1446      GGAGCAUUUAAGGGGUGCUUUUUAAAACGCUCAAGUUUUUAAAAGGCU
AE015414.1/5697-5597      AAUUUCUUGUCGGAGUGCCUUA...................ACUGGCU
AE006165.1/9171-9068      GCACUUUAGUCGGGGUGCUUUGUAACCAAAUUGU......ACAAAGCU
AE011282.1/7576-7478      CUUGGACGUUGGGGGUGGGAUUCACUGCGU..........GAAUCUCU
AK119882.1/1-98           UUGAAUGACUCGGGGUGCCCCUUUUCAC............AAAGGGCU
AK120238.1/2075-2184      CUAUGUUAGGAGGUGGCCUCUUGGCCUGGAUUGUUGUGA.AUUGGGCU
#=GC SS_cons              .....<<<<<<<<<..<<<<<<...................>>>>>>.

AE014730.1/8718-8610      GAGAGGAGACUCA.UAGUCUC.GACCGAUGGAACGUGA.CCGGAUAAU
AE007806.1/8808-8702      GAGAGGAAGUAAUU.GAACUUCGAUCCAUAU.ACCUGAUUUGGAUAAU
AE005876.1/3727-3622      GAGAUUGGGCUC..ACGCCCUGA.CCCGUAGAACCUGAUCCGGGUCAU
AE017257.1/202839-202737  GAGAGUACAU.....AAAGUACAACCCUUUGAACCUGAUAUUGUUAAA
AE001547.1/1336-1446      GAGAUC...............AAACCCGUAGAACUUG.UCAAGGUAAU
AE015414.1/5697-5597      GAGACCGUUU......AUUCGGGAUCCGCGGAACCUGAUCAGGCUAAU
AE006165.1/9171-9068      GAGAU...............GAUACCCGUGA.ACCUGAUACAGCUAAC
AE011282.1/7576-7478      GAGAG................AGUCCCC.GGAACCUGAUCAGGAUAAG
AK119882.1/1-98           GAGAA................AUACCCGUACCACCUGAUCUGGAUAAU
AK120238.1/2075-2184      GAGAA................AGUCCCUUUGAACCUGAACAGGAUAAU
#=GC SS_cons              ....<<<<<<......>>>>>>..>>>>.....<<<<..<<<<<....

AE014730.1/8718-8610      GCCGGCGCACGGAAAUGUCGCUCUUACCUACC
AE007806.1/8808-8702      GCCAACGUAGGAA..AUAGGUUACUUGAUUUA
AE005876.1/3727-3622      GCCGGCGAAGGGA..GGGAACGCGGACGACAG
AE017257.1/202839-202737  GCAAGCGUAGGGA..AAUAUAUGUAUAUAAAU
AE001547.1/1336-1446      UCUUGCGUAAGGA.AUAACAUGUUAAUAACCA
AE015414.1/5697-5597      ACCUGCGAAGGGA..ACAAGAGUUAAUCUGCU
AE006165.1/9171-9068      ACUGACGUAGGAA..ACUAAUUAUGCCAAUAA
AE011282.1/7576-7478      ACCUGCGUAGGAA..AACGGACCUGUAAAAUU
AK119882.1/1-98           GCCAGCGUAGGGA..AGUCAGAUGCCUGCCCG
AK120238.1/2075-2184      GCCUGCGAAGGGA.GUGUGCAUUUCUACUUUU
#=GC SS_cons              >>>>>..>>>>....>>>>>............
//
# STOCKHOLM 1.0

#=GF AC  RF00059:2
#=GF ID  THI:2

AP005276.1/73231-73124    ACUAGUGACACGGGGUGCAAAAGCACUUUAAAAAAG....CUUUCGCU
AP005217.1/259663-259772  UCGAUAUUGCACGGGUGUCCGGUGAAAG............UCCGGGCU
AP005280.2/150221-150333  GACUUACCCCACGGGUGCCCAAUGC...............AUUGGGCU
AE017179.1/109208-109098  AGACCGCUACGGGGGUGCUUGCCGGCAAGAAUUGCGAUACGGCAGGCU
Z82044.1/19193-19300      AAUAGUUACUGGGGGUGCCCGCUU.................UCGGGCU
AP004825.1/152111-152011  CGCACACACUAGGGGUGUUU......................UAUACU
AL646057.1/132458-132357  UGGAUGAAACAGGGGUGCCGUGCGGAUGGGCC........GCGCGGCU
AE016763.1/55154-55058    CCAAACGACUCGGGGUGCCCUUCUUUG.............UGAAGGCU
AE016785.1/288775-288889  AGCGCCACCAAGGGGAGCCCGGCA.................AUGGGCU
AE011282.1/7576-7478      CUUGGACGUUGGGGGUGGGAUUCACUGCGU..........GAAUCUCU
#=GC SS_cons              .....<<<<<<<<<..<<<<<<...................>>>>>>.

AP005276.1/73231-73124    GAGAUU......................ACACCCGUCGAACCUGAUCC
AP005217.1/259663-259772  GAGAGGUGGCA..........CAGCCACAA.CCGUUGA.ACCUGAUCC
AP005280.2/150221-150333  GAGAUUGCGCGCUGUUGC....UGCGCGGGACCGUUCGAACCUG.UCU
AE017179.1/109208-109098  GAGAUA......................AUACCCAUAG.ACCUGAUCC
Z82044.1/19193-19300      GAGAGAGAAGGCAA........GCUUCUUAACCCUUUGGACCUGAUCU
AP004825.1/152111-152011  GAGAUGAGGCUU..........GCCCUCAAACCCUUUGAACCUGAUCU
AL646057.1/132458-132357  GAGAG.......................AGUCCCUUCGCACCCGAUCC
AE016763.1/55154-55058    GAGAA.......................AUACCCGUAUCACCUGAUCU
AE016785.1/288775-288889  GAGAAACCGCUGAACGCUACAGCGCGGU.GACCCUUCGAACCUGAUCC
AE011282.1/7576-7478      GAGAG.......................AGUCCCC.GGAACCUGAUCA
#=GC SS_cons              ....<<<<<<.............>>>>>>..>>>>.....<<<<..<<

AP005276.1/73231-73124    AGUUAGUACUGGCG.AAGGGACUGUCGCAUUGGACCCAU
AP005217.1/259663-259772  GGGUAAUGCCGGCGAUAGGGA.GGAAACAUGACUGAUAC
AP005280.2/150221-150333  GGUUAACACCAGCG.AAGGAA.GCGAGGAUUGAUUGUCC
AE017179.1/109208-109098  GGAUAAUACCGGCG.GAGGGAUGUAGAAUCGAAUACACA
Z82044.1/19193-19300      GGUUCGUACCAGCG.UGGGGA.AGUAGAGGAAUUGUUUU
AP004825.1/152111-152011  AGCUUGAACUAGCG.UAGGAA.AGUGUUACUAUACAUAU
AL646057.1/132458-132357  GGUUCGUACCGGCG.UGGGAA.GUUUCUUCAGAACACCG
AE016763.1/55154-55058    GGAUAAUGCCAGCG.UAGGGA.AGUCACGGACCACCAGG
AE016785.1/288775-288889  GGAUCAUGCCGGCG.AAGGGA.UGGGGCUUGUAACCUGC
AE011282.1/7576-7478      GGAUAAGACCUGCG.UAGGAA.AACGGACCUGUAAAAUU
#=GC SS_cons              <<<....>>>>>...>>>>...>>>>>............
//
# STOCKHOLM 1.0

#=GF AC  RF00059:3
#=GF ID  THI:3

Z82044.1/19193-19300      AAUAGUUACUGGGGGUGCCCGCUU.........UCGGGCUGAGAGAGA
AE017040.1/281858-281743  GUGAUAAACUAGGGGUGCCUAACGUAUG....CGUAGGCUGAGAGAGA
AE017026.1/171648-171751  UGAAACCACUAGGGGUGCUUG............UUGUGCUGAGAGAGG
AP004595.1/78821-78718    AAAAUCCACUAGGGGUGCCAU............UUUGGCUGAGAUAAG
AP004595.1/261047-260946  CGUACGCACUAGGGGAGCUAUAAC.........UAUGGCUGAGAAGGC
AL596164.1/123476-123581  AAGAAAAACUAGGGGGGCCGAU...........UCUGGCUGAGAUAGG
AE013167.1/14408-14306    UCAAAGUGCUAGGGGAGCCAGA...........AAUGGCUGAGAGGGG
AL646057.1/132458-132357  UGGAUGAAACAGGGGUGCCGUGCGGAUGGGCCGCGCGGCUGAGAG...
AE016836.1/195900-195996  CUUGACGACUCGGGGUGCCCUUCUUUG.....UGAAGGCUGAGAA...
AP005345.1/54245-54147    CCAACAUAGUCGGGGAGCCUU............AUCGGCUGAGAUCGC
#=GC SS_cons              .....<<<<<<<<<..<<<<<<...........>>>>>>.....<<<<

Z82044.1/19193-19300      AGGCAA....GCUUCUUAACCCUUUGG..ACCUGAUCUGGUUCGUACC
AE017040.1/281858-281743  AGCGCGUAA.ACUUCUUAACCCUUUGG..ACCUGAUCUGGCUCGUACC
AE017026.1/171648-171751  AAU.......AAUCCUUAACCCUUAUAACACCUGAUCUAGGUAAUACU
AP004595.1/78821-78718    AUGCA.....UUUCUUGAUCCCUUUGA..ACCUGAACUGGUUAAUACC
AP004595.1/261047-260946  AA..........UGCCUGACCCUUAUA..ACCCGAACUAGAUAAUACU
AL596164.1/123476-123581  AAGGUAAU.GCUUUCUGA.CCCUUUGA..ACCUG.U.UUGUUAGUGCA
AE013167.1/14408-14306    AUU.......CGUUCCCGACCCUUAGA..ACCUGACCAGGGUAAUGCC
AL646057.1/132458-132357  ................AGUCCCUUCGC..ACCCGAUCCGGUUCGUACC
AE016836.1/195900-195996  ................AUACCCGUACC..ACCUGAUCUGGAUAAUGCC
AP005345.1/54245-54147    CA..........CGCGAGACCCGUUGA..ACCUGAUUCAGUUAAUACU
#=GC SS_cons              <<.........>>>>>>..>>>>.......<<<<..<<<<<....>>>

Z82044.1/19193-19300      AGCGUGGGGAAGUAGAGGAAUUGUUUU
AE017040.1/281858-281743  AGCGUAGGGAAGUUAACGGCUUUACAU
AE017026.1/171648-171751  AGCGAAGGGAAGUGGAACAACGAAUAA
AP004595.1/78821-78718    AGCGUAGGAAAGUGGAGUUGGCGACUA
AP004595.1/261047-260946  AGCGUGGGGAAGUGUAGUUCGUUGUAU
AL596164.1/123476-123581  AGCGUAGGGAAGUGAAUGUGAAAGUGA
AE013167.1/14408-14306    UGCGAAGGGAAGCACGUUUUACGGAAU
AL646057.1/132458-132357  GGCGUGGGAAGUUUCUUCAGAACACCG
AE016836.1/195900-195996  AGCGUAGGGAAGUCUGACACUGCUCGU
AP005345.1/54245-54147    GACGUAGGGAACUAUUACGCGCAUAUA
#=GC SS_cons              >>..>>>>..>>>>>............
//
# STOCKHOLM 1.0

#=GF AC  RF00059:4
#=GF ID  THI:4

AY102616.1/4667-4777      GGCAGUCCCCACGGGCGCCCGAGC.......................A
BX248356.1/234808-234920  ACGAGAUGCCCGG.GUGCCAUGUGCUUGCUGU..............AC
AE017178.1/187260-187147  AAUUGGGAGAAGGGGUGCUUCCUGUAGCAAUCGGAAUGCGU.....GG
AE001862.1/178389-178274  CAUCGUCAACAGGGGUGCCUCCGCAUAUGGGC..............CG
U64312.1/2271-2374        UAGUUCCACUAGGGGUGUCAGUUU......................GU
AE016999.1/106602-106704  AAUUAAGGACCGGGGAGCCAA...........................
AE013127.1/3291-3189      CUCAAGUGCUAGGGGAGCCAGA.........................A
BX571860.1/177712-177587  ACUUUCUUGUCGGAGUGCCUAGCGUAAGCUGUUUUAUCGCAGCAUACA
AE013968.1/546-637        ACCACCUAACCGC..CGCAAUUUU.......................U
AF279106.2/41735-41832    UUAAUUGCAAAGGGGUGGCCAUU........................U
#=GC SS_cons              .....<<<<<<<<<..<<<<<<.........................>

AY102616.1/4667-4777      CGGGCUGAGAUCGCGCUGAUUSU.GCGCGAGCACCGUUUGAACCUG.U
BX248356.1/234808-234920  GUGGCUGAGACGGCUGU.......UUGGCCGAA.CCGUAGAACCUGAU
AE017178.1/187260-187147  AUGGCUGAGAAC..................AAACCCUCAUCACCUGAA
AE001862.1/178389-178274  GAGGCUGAGAGGGCAACU......CGGGCCUAACCCUAUGAACCUGAA
U64312.1/2271-2374        CUGACUGAGAGAGGGA.........AGCCUCAACUCUUAAAACCUGAU
AE016999.1/106602-106704  UUGGCUGAGAGGAUGUAAGU...AAACAUC.GACCCUCA..ACCUGAU
AE013127.1/3291-3189      AUGGCUGAGAGGGGAUU.......CGUUCCCGACCCUUAGAACCUGAC
BX571860.1/177712-177587  CAGGCUGAGACCGUUA.........AUUCGGGAUCCGCGGAACCUGAU
AE013968.1/546-637        UUCGCUGAGAGU..................AAACCCGUCGAACCUGAU
AF279106.2/41735-41832    CGGCCUGAGAUCCU.............UGGAAACUCUUUGAACCUGAU
#=GC SS_cons              >>>>>.....<<<<<<.........>>>>>>..>>>>.....<<<<..

AY102616.1/4667-4777      CCGGUUAGCACCGGCG.AAGGAA.GAGAGGAAUGGUGCAAUG
BX248356.1/234808-234920  CUGGGUAAUACCAGCGAUAGGAA..GACUUCAUACUGUGACU
AE017178.1/187260-187147  CCGGAUAAUACCGGCG.UAGGAAACUCUCCGUCUGACUAUCU
AE001862.1/178389-178274  CUGGUUAGCACCAGCG.GAGGGA.GUGUGACGGGCGCAGAGA
U64312.1/2271-2374        CUAGCUUGUACUAGCG.UAGGGA..AGUGGUGGCACAUUCUA
AE016999.1/106602-106704  CUGGAUAAUGCCAGCG.UAGGGA.GUUACUUAAAGUGAUGUA
AE013127.1/3291-3189      CAGGGUAAUGCCUGCG.AAGGGA..AGCACGUUUUAUUGAGU
BX571860.1/177712-177587  CGGGUUAAUACCCGCG.AAGGGA..ACAAGAGUAAUCAACCG
AE013968.1/546-637        CCGGUUAACCCCGGCG.GAGGGA..UUUGAGAAUGAUAACGA
AF279106.2/41735-41832    CCAUACAAUAAUGGCG.GAGGAA..UUGCAUGAAAAUCAUUA
#=GC SS_cons              <<<<<....>>>>>...>>>>....>>>>>............
//
# STOCKHOLM 1.0

#=GF AC  RF00003:0
#=GF ID  U1:0

X02585.1/923-1086       AUACUUACCUGGCAGGCGAGAUACCAUGAUCACGAAGGUGGUUCUCCCAG
AL137798.8/45314-45477  AUACUUACCUGGCAGGGGAGAUACCAUGAUCACGAAGGUGGUUUUCCCAG
X69332.1/1-142          AUACUUACCUGGACGGGGUCGACGAGCGAUCAAGAAGGCUCGUGGCCU.A
X69328.1/1-158          ..ACUUACCUGGACGGGGUCGACGGCCGAUCAAGAAGGGUCGUGGCCU.A
X69331.1/1-139          ..ACUUACCUGGACGGGGUCGACGGGCGAUCAAGAAGGCCCGUGGCU..G
X69334.1/1-160          AUACUUACCUGGACGGGGUCGACGAGCGAUCAAGAAGGCUCGUGGCCU.G
Z11883.1/361-516        AUACUUACCUGGACGGGGUCAAUGGACGAUCAAUAAGACCCAUGGCCU.A
X14417.1/177-340        AUACUUACCUGGACGGGGUCAAUGGGUAAUCAAGAAGUUCCAUGGCCU.A
X14414.1/152-312        AUACUUACCUGGACGGGGUCAAUAGGCGAUCAAUAAGACCCAUGGCCU.A
AB023028.1/448-285      UUACUUACCUGGACGGGGUCAACUUGUGAUCAAUAAGACGAGUGGCCU.A
#=GC SS_cons            ...........<<<<<<<<<<.<<<<<..........>>>>>>>>>>>.<

X02585.1/923-1086       GGCGAGGCUCAGCCAUUGCACUC..CGG.CU..GUGCUGA.CCCCUGCGA
AL137798.8/45314-45477  GGCGAGGCUUAUCCAUUGCACUC..CGG.AU..GUGCUGA.CCCCUGCGA
X69332.1/1-142          GGUUAGUGGCCCACAUUGCACUU..GGUGGG.UG.CGCUG.GCCUA.UCA
X69328.1/1-158          GAUCAAUGGUC.ACAUUGCACCU..GGUGAG.CG.CGUUG.GCCUA.CCA
X69331.1/1-139          GGUCGAUGGCCCACAUUGCACUU..GGUGGG.UG.CGUCG.GCCCA.UCA
X69334.1/1-160          GGUCAGUGGUCCACAUUGCACUU..GGU.GGAUGCCUG...GCCCA.CCA
Z11883.1/361-516        GGUUGGUGACCUCCAUUGCACUU..UGGAGG..GGUGCCU.GCCUA.AGG
X14417.1/177-340        GGUUGGUGACCUCCAUUGCACUA..AGGAGG..GGUGCUU.GCCUA.AGG
X14414.1/152-312        GGUUGGUGACCUCCAUUGCACUU..UGGAGG..GGUGCCA.AUCUA.AGG
AB023028.1/448-285      GGCUAGUGACCUCCAUUGCACAUAACGGAGG..GGUGCUUAGCUUA.AGG
#=GC SS_cons            <<......<<<.<<............>>..>..>.>......>>>..<<<

X02585.1/923-1086       UUUCCCCAAAUGCGG.GAAACUCGACUGCAUAAUUUCUGGUAG..UGGGG
AL137798.8/45314-45477  UUUCCCCAAAUGUGG.GAAACUCGACUGCAUAAUUUGUGGUAG..UGGGG
X69332.1/1-142          UCU.CCCCAA.GUGG.GAGAGUGAACGUCAUAAUUUGUGGUAG...AGGG
X69328.1/1-158          UCU.CCCCAA.GUGG.GAGAGUGGACGUCGUAAUUUGUGGUAG...AGGG
X69331.1/1-139          UCU.CCCCAA.GUGG.GAGAAUGAACGUCAUAAUUUGUGGUAG...AGGG
X69334.1/1-160          UCU.CCCCAA.GUGG.GAGAGUGGAUGUCAUAAUUUGUGGUAG...AGGG
Z11883.1/361-516        UCGGCCCAA..GUGGUCG.AGCCUACGUCAUAAUUUGUUGCAG...UGGG
X14417.1/177-340        UCGACCCAA..GUGGUUG.AGCCUACGUCAUAAUUUGUUGUUGCAGAGGG
X14414.1/152-312        UCGGCCCAA..GUGGUCG.AGCCUACGUCAUAAUUUGUUGCUG...UGAG
AB023028.1/448-285      UCU.CCCCAA.GUGG.GAGAGCCUGCGUCAUUAUUUGUGGCAG...AGGG
#=GC SS_cons            <.<.<<.......>>.>>...>>>.>>>>.................<<<<

X02585.1/923-1086       G.ACUGCGUUCGCGCUUUCCCCUG
AL137798.8/45314-45477  G.ACUGCGUUCGCGCUUUCCCCUG
X69332.1/1-142          GGUAC...................
X69328.1/1-158          GGUACGCGUUCGCGCGGCCCCUAC
X69331.1/1-139          GGUAC...................
X69334.1/1-160          GGUACGCGUUCGCGCGGCCCCUGC
Z11883.1/361-516        GGCCUGCGUUCGCGCGGCC.....
X14417.1/177-340        GGCCUGUGUUCGCGCAGCCCCUAC
X14414.1/152-312        GGCCUGUGUUCGCGCGGCCCCUGC
AB023028.1/448-285      GGCCUGCGUUCGCGCGGUCCCUAC
#=GC SS_cons            <..<<<<<....>>>>>.>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00003:1
#=GF ID  U1:1

X63783.1/2026-2185  ..ACUUACCUGGCUGGAGUU.UG.CUAUCGAUCAUGAAGGGUAGCGGCUU.AGG
X01725.1/69-232     AUACUUACCUGGCGUAGAGGUUA.ACCGUGAUCACGAAGGCGGUUCCUCCGGAG
M59827.1/771-934    AUACUUACCUGGCAGGGGAG..CAUCUGUGAUCAGCAAGGCAGAGCUCCCAGGG
X75936.1/1034-1194  AUACUUACCUGGCGCAGGGG..UAGCAUUGAUCAAGAAGGAUGCACCCCCAGGA
X04994.1/647-780    .............................GAUCAAGAAGGAUGCACCCCCAGGG
X13842.1/1-152      ......ACCUGGCCGGGGGA..AGUCGGUGAUCAAGACGGCCGAGUCCCU.AGU
X70869.1/1-161      AUACUUACCUGGCCCGCUUC..UCGAGGUGGUCACCAUGGCCUCGGUUGU.GUG
X69333.1/1-157      ....UUACCUGGACGGGGUC..GACGAGCGAUCAAGAAGGCUCGUGGCCU.AGG
X15928.1/1-160      AUACUUACCUGGAUGGGGUC..AAUGGGUGAUCAUGAAGGCCCAUGGCU..AGG
AB023028.1/448-285  UUACUUACCUGGACGGGGUC..AACUUGUGAUCAAUAAGACGAGUGGCCU.AGG
#=GC SS_cons        ...........<<<<<<<<<..<.<<<<<..........>>>>>>>>>>>.<<<

X63783.1/2026-2185  GUGGAGCAGGUCAUUGCACAA.AAGAUGUC.U.GUAAUACCUUA.UUGUUCCCC
X01725.1/69-232     UGAGGCUUGGCCAUUGCACCU..CGG.CU..GAGUUGA.CCUCUGCGAUUAUUC
M59827.1/771-934    UGAGGCUCAUCCAUUGCACAU..CGG.AUU..UGCUGA.CCCCUGCGAUGUCCC
X75936.1/1034-1194  CGAGGCUUG.CUAUUGCACAC..CGG.CU...CGCUGA.AGCUUGCGAUUCCCU
X04994.1/647-780    CGAGGCUUG.CCAUUGCACUC..CGG.CU...UGCUGA.ACCUUGCGAUUCCCC
X13842.1/1-152      UGGGGAACCUCUCCUGCACUU..GAGAGG..G.GCUC.CUUCUA.UGAUUGCCU
X70869.1/1-161      GUCGGUCUUCACCUUGCACUU..UGUGAG..G.GCCUU.CCGCA..GUCGGCCC
X69333.1/1-157      UUAGUGGCCCACAUUGCACUU..GGUGGG.UG.CGCUG.GCCUA.UCAUCU.CC
X15928.1/1-160      CAAGUGACUUCCAUUGCACUU..AGGAGG..GGUGCUU.GCCUA.AGGUCUACC
AB023028.1/448-285  CUAGUGACCUCCAUUGCACAUAACGGAGG..GGUGCUUAGCUUA.AGGUCU.CC
#=GC SS_cons        ......<<<.<<............>>..>..>.>......>>>..<<<<.<.<<

X63783.1/2026-2185  G..UGC.GG.GGAACCGAAACAGCACAAUUUCUGCUAGG..GGAGACGUGCACU
X01725.1/69-232     CUAAUGUGAAUAA.CUCG.UGCGUGUAAUUUUUGUUAG..CCGGGA.AUGGCGU
M59827.1/771-934    CAAAUGCGG.GAUUCUCG.ACUGUAUUAUUUCUGGUAG..UGGGGG.ACUGCGU
X75936.1/1034-1194  CAAACGUAG.GGAACUCG.GGCGUAUUAUUUAUGGUAG..CGGGGA.UCUGCGU
X04994.1/647-780    CAAACGUGG.GGAACUCG.GGCGUACAAUUUAUGAUAG..CGGAGA.UCUGCGU
X13842.1/1-152      UC.....GGGUAA.CUCA.ACGGCAUAAUUUGUGAUAG..CGUGGGG.UGCGCU
X70869.1/1-161      UUC....GGGUGUCCGGC.AGGGCUAAAUUUUUGUUAGGC.UGAGGACCCGCGC
X69333.1/1-157      CCAA.GUGG.GAGAGUGA.ACGUCAUAAUUUGUGGUAG...AGGGGGUACGCGU
X15928.1/1-160      CAA..GUGGUGG.AACCU.ACAUCAUAAUUUGUUGCUG..UGGGGGC.CUGCGU
AB023028.1/448-285  CCAA.GUGG.GAGAGCCU.GCGUCAUUAUUUGUGGCAG...AGGGGGCCUGCGU
#=GC SS_cons        .......>>.>>...>>>..>>>>.................<<<<<..<<<<<.

X63783.1/2026-2185  U.A.GUGCUGUCUCC.
X01725.1/69-232     U.CGCGCCG.UCCCGA
M59827.1/771-934    U.CGCGCUUUCCCCUG
X75936.1/1034-1194  U.CGCGCU.AUCCCCU
X04994.1/647-780    U.CGCGCU.AUCUCCU
X13842.1/1-152      UGUCGCGCCCUGCAUU
X70869.1/1-161      UAUGCGCGGCCUCGGC
X69333.1/1-157      U.CGCGCGGCCCCUGC
X15928.1/1-160      U.CGCGCGGCCCUCUU
AB023028.1/448-285  U.CGCGCGGUCCCUAC
#=GC SS_cons        ....>>>>>.>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00003:2
#=GF ID  U1:2

Y00131.1/944-1108     AUACUUACCUGGCAGG.GGAG.AUACCAUGAUCAUGAAGGUGGUUUUCCCAG
X01749.1/448-581      AUACUUACCUGGCGCA.GGGG.UCGCAUUGAUCAAGAAGGAUGCACCCCCAG
L22246.1/3195-3357    AGACUUAUUUGGUUGG.GAGGAU.UUCGUAAUCAG.AAGGCGGGACCUCCAU
AC006665.1/5230-5065  AAACUUACCUGGCUGGGGGUUAU.UUCGCGAUCACAAAGGCGGAAUCCCCAU
X13842.1/1-152        ......ACCUGGCCGG.GGGA.AGUCGGUGAUCAAGACGGCCGAGUCCCU.A
X70869.1/1-161        AUACUUACCUGGCCCG.CUUC.UCGAGGUGGUCACCAUGGCCUCGGUUGU.G
X06880.1/1-162        AUACUUACCUGUCCGG.CCUGCG.ACCUCGAGCAAGAAGGGGGUCUAGGUAG
X69328.1/1-158        ..ACUUACCUGGACGG.GGUC.GACGGCCGAUCAAGAAGGGUCGUGGCCU.A
Z11882.1/353-508      AUACUUACCUGGACGG.GGUC.AAUGGGCGAUCAAUAAGACCCAUGGCCU.A
X15927.1/1-160        AUACUUACCUGGAUGG.GGUC.AAUGGGUGAUCAAGAAGGCCCAUGGCU..A
#=GC SS_cons          ...........<<<<<.<<<<.<.<<<<<..........>>>>>>>>>>>.<

Y00131.1/944-1108     GGCGAGGCUCACCCAUUUGCACUGUUGGG.GU..GUGCUGA.CCCCUGCGAU
X01749.1/448-581      GGCGAGGCUUG.CCA.UUGCACUC..CGG.CU...UGCUGA.ACCUUGCGAU
L22246.1/3195-3357    GGCGAGGCUUGGUCA.UUGCACUU.UCGA..CC.AGGCUGA.CCAGUGUGGC
AC006665.1/5230-5065  GGUUAGGCCUACCCA.UUGCACUU.UUGG..UGCGGGCUGA.CCUGUGUGGC
X13842.1/1-152        GUUGGGGAACCUCUC.CUGCACUU..GAGAGG..G.GCUC.CUUCUA.UGAU
X70869.1/1-161        UGGUCGGUCUUCACC.UUGCACUU..UGUGAG..G.GCCUU.CCGCA..GUC
X06880.1/1-162        UGCUUGUACCUCGCC.UUGUACUA..UGCUUG..G.G.GUA.GCGCUGUGUG
X69328.1/1-158        GAUCAAUGGUC.ACA.UUGCACCU..GGUGAG.CG.CGUUG.GCCUA.CCAU
Z11882.1/353-508      GGCUUGUGACCUCCA.UUGCACUU..UGGAGG..GGUGCCU.GCCUA.AGGU
X15927.1/1-160        GGCAAGUGACCUCCA.UUGCACUU..AGGAGG..GGUGCUA.GCCUA.AGGU
#=GC SS_cons          <<......<<<.<<.............>>..>..>.>......>>>..<<<<

Y00131.1/944-1108     UUCCCCAAAUGCGG...GAAACUCGA.UGCAAA.UUUGUGGUAG..UGGGGG
X01749.1/448-581      UCCCCCAAACGUGG...GGAACUCGGGCGUACAAUUUAUGGUAG........
L22246.1/3195-3357    AGACCCGAGUUGGGAU.UGG..CCAACAGCAUAAUUUUUGCGUU....UGGG
AC006665.1/5230-5065  AGUCUCGAGUUGAGAUUCG...CCAACAGCUUAAUUUUUGCGU...AUCGGG
X13842.1/1-152        UGCCUUC.....GG..GUAA.CUCAACGGCAUAAUUUGUGAUAG..CGUGGG
X70869.1/1-161        GGCCCUUC....GG..GUGUCCGGCAGGGCUAAAUUUUUGUUAGGC.UGAGG
X06880.1/1-162        CGGGGCAA..GUCC...UCGUUACAACGGAAUAAUUUCUGGCAGG..CCGUU
X69328.1/1-158        CU.CCCCAA.GUGG...GAGAGUGGACGUCGUAAUUUGUGGUAG...AGGGG
Z11882.1/353-508      CGACCUAA..GUGG..UCG.GGCCUAUGUCAUAAUUUGUUGCUG...UGGGG
X15927.1/1-160        CUACCCAA..GUGG..UGG.AGCCUACAUCAUAAUUUGUUGCUG..UGGGGG
#=GC SS_cons          .<.<<.......>>...>>...>>>.>>>>.................<<<<<

Y00131.1/944-1108     .ACUGCGUU.C.GCGCUCUCCCCUG
X01749.1/448-581      .........................
L22246.1/3195-3357    GACAGCGUU.C.GCGCUUCCCCGCG
AC006665.1/5230-5065  G.CUGCGUG.C.GCGCGGCCCUGAA
X13842.1/1-152        G.UGCGCUUGU.CGCGCCCUGCAUU
X70869.1/1-161        ACCCGCGCUAU.GCGCGGCCUCGGC
X06880.1/1-162        GCACGCGCU.U.GCGCGUCCUCGGC
X69328.1/1-158        GUACGCGUU.C.GCGCGGCCCCUAC
Z11882.1/353-508      GCCUGCGUU.CUGCGCG..CC....
X15927.1/1-160        C.CUGUGUU.C.GCGCGGCCCCCUC
#=GC SS_cons          ..<<<<<......>>>>>.>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00003:3
#=GF ID  U1:3

X63783.1/598-755        ..AAUUACAAUGUUGU.AGUU.AG.CUAUAUAUCAAAAAAUAUAGCAACU
X63783.1/1396-1555      ..ACUUACCUGGCUGG.AGUU.AG.CUAUCGAUCAUGAAGGGUAGCGGCU
AC004546.1/16021-16184  AUACUUACCUGGCGUA.GAGGUUA.ACCGUGAUCACGAAGGCGGUUCCUC
X01749.1/448-581        AUACUUACCUGGCGCA.GGGG..UCGCAUUGAUCAAGAAGGAUGCACCCC
L22246.1/5536-5699      .AACUAACCUGGCUGGGAGGC.AU.CUCGCGAUCAUGAAGGCGGGACCUC
AC006665.1/5230-5065    AAACUUACCUGGCUGGGGGUU.AU.UUCGCGAUCACAAAGGCGGAAUCCC
M73768.1/361-517        AAACUUACCUGGCGCC.GGGU.UC.AGGGUGAUCAGCAAGGCUCCGACCC
X13841.1/397-552        .UACAUACCUGGCCGG.GGGA..AGUCGGUGAUCAAGACGGCCGAGUCCC
X69331.1/1-139          ..ACUUACCUGGACGG.GGUC..GACGGGCGAUCAAGAAGGCCCGUGGCU
X14414.1/152-312        AUACUUACCUGGACGG.GGUC..AAUAGGCGAUCAAUAAGACCCAUGGCC
#=GC SS_cons            ...........<<<<<.<<<<..<.<<<<<..........>>>>>>>>>>

X63783.1/598-755        A.AGG.UGGAGCAAGUCAUUGUACUAAAGAUGUU.U.GUAAUACCUUG..
X63783.1/1396-1555      U.AGGGUGGAGCAGGUCAUUGCACAAAAGAUGUC.U.GUAAUACCUUA.U
AC004546.1/16021-16184  CGGAGUGAGGCUUGGCCAUUGCACCU.CGG.CU..GAGUUGA.CCUCUGC
X01749.1/448-581        CAGGGCGAGGCUUG.CCAUUGCACUC.CGG.CU...UGCUGA.ACCUUGC
L22246.1/5536-5699      CAUGGCGAGGUUUGGCCAUUGCACUUUCGG..CC.AGGCUGA.CCCGUGU
AC006665.1/5230-5065    CAUGGUUAGGCCUACCCAUUGCACUUUUGG..UGCGGGCUGA.CCUGUGU
M73768.1/361-517        CAGGUGGAGGCUCA.GCAUUGCACUC.CGC..U..GUGUUGA.AGCCUGC
X13841.1/397-552        U.AGUUGGGGUACCUCUCCUGCACUU.GAGAGG..GGCCCC..UUCUA.U
X69331.1/1-139          ..GGGUCGAUGGCCCACAUUGCACUU.GGUGGG.UG.CGUCG.GCCCA.U
X14414.1/152-312        U.AGGUUGGUGACCUCCAUUGCACUU.UGGAGG..GGUGCCA.AUCUA.A
#=GC SS_cons            >.<<<......<<<.<<...........>>..>..>.>......>>>..<

X63783.1/598-755        .AUGUUCCC.G..CUGGG..AGCAAUA..ACAACAAAAUUUCUGAUUGG.
X63783.1/1396-1555      UGUUCCCCG..UGC.GG...GGAACCGAAACAGCACAAUUUCUGCUAGG.
AC004546.1/16021-16184  GAUUAUUCCUAAUGUGA..AUAA.CUCG.UGCGUGUAAUUUUUGGUAG.C
X01749.1/448-581        GAUUCCCCCAAACGUGG...GGAACUCG.GGCGUACAAUUUAUGGUAG..
L22246.1/5536-5699      GGCAGUCCCGAGUUGGGAU.UGG..CCA.ACAGCAUAAUUUUUGCGUU..
AC006665.1/5230-5065    GGCAGUCUCGAGUUGAGAUUCG...CCA.ACAGCUUAAUUUUUGCGU..A
M73768.1/361-517        GACGGACUCUAAUCGGGUU.CGC..UCG.GGUGCAUAGUUUUUGCCAG.U
X13841.1/397-552        GAUUGCCUUC.....GG..GUAA.CUCA.ACGGCAUAAUUUGUGAUAG.C
X69331.1/1-139          CAUCU.CCCCAA.GUGG...GAGAAUGA.ACGUCAUAAUUUGUGGUAG..
X14414.1/152-312        GGUCGGCCCAA..GUGG..UCG.AGCCU.ACGUCAUAAUUUGUUGCUG..
#=GC SS_cons            <<<.<.<<.......>>...>>...>>>..>>>>................

X63783.1/598-755        AAAUA.GUCAUUAAACUAACUGGCUAUUU.
X63783.1/1396-1555      GGAGACGUGCACUU.A..GUGCUGUCUCC.
AC004546.1/16021-16184  CGGGA.AUGGCGUU.C.GCGCCG.UCCCGA
X01749.1/448-581        ..............................
L22246.1/5536-5699      .UGGGGACAGCGUU.C.GCGCUUCCCCGCC
AC006665.1/5230-5065    UCGGGG.CUGCGUG.C.GCGCGGCCCUGAA
M73768.1/361-517        GGGGA....GCCUU.C.GGGC..GUCCCUU
X13841.1/397-552        GUGGGG.UGCGCUUGU.CGCGCCCUGCAU.
X69331.1/1-139          AGGGGGUAC.....................
X14414.1/152-312        UGAGGGCCUGUGUU.C.GCGCGGCCCCUGC
#=GC SS_cons            <<<<<..<<<<<......>>>>>.>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00003:4
#=GF ID  U1:4

X55773.1/387-534        ..ACUUACCUGGCAUG.AG.U..UUCUGCAGCACAAGAAUUGUGGAGACU
AE003745.3/26197-26359  .UACUUACCUGGCGUA.GAGGUUA.ACCGUGAUCACGAAGGCGGUUCCUC
X01091.1/442-605        AUACUUACCUGGCAGG.GGAG..ACACCAUGAUCAGGCAGGUGGUUUUCC
X75936.1/1034-1194      AUACUUACCUGGCGCA.GGGG..UAGCAUUGAUCAAGAAGGAUGCACCCC
L22246.1/5536-5699      .AACUAACCUGGCUGGGAGGC.AU.CUCGCGAUCAUGAAGGCGGGACCUC
X70869.1/1-161          AUACUUACCUGGCCCG.CUUC..UCGAGGUGGUCACCAUGGCCUCGGUUG
X06880.1/1-162          AUACUUACCUGUCCGG.CCUG.CG.ACCUCGAGCAAGAAGGGGGUCUAGG
X69331.1/1-139          ..ACUUACCUGGACGG.GGUC..GACGGGCGAUCAAGAAGGCCCGUGGCU
Z11882.1/353-508        AUACUUACCUGGACGG.GGUC..AAUGGGCGAUCAAUAAGACCCAUGGCC
X14419.1/178-338        AUACUUACCUGGACGG.GGUC..AAUGGGCGAUCAUGAACACCCAUGGCC
#=GC SS_cons            ...........<<<<<.<<<<..<.<<<<<..........>>>>>>>>>>

X55773.1/387-534        CAGUUAUUUGUCUUGGCAUUGCACUG.AGC.CCUGACGAA..UAACUGUG
AE003745.3/26197-26359  CGGAGUGAGGCUUGGCCAUUGCACCU.CGG.CU..GAGUUGACCUCUGCG
X01091.1/442-605        CAGGGCGAGGCUCAUCCCCUGCACUC.CGG.GU..GUGCUGACCCCUGCG
X75936.1/1034-1194      CAGGACGAGGCUUG.CUAUUGCACAC.CGG.CU...CGCUGAAGCUUGCG
L22246.1/5536-5699      CAUGGCGAGGUUUGGCCAUUGCACUUUCGG..CC.AGGCUGACCCGUGUG
X70869.1/1-161          U.GUGGUCGGUCUUCACCUUGCACUU.UGUGAG..G.GCCUUCCGCA..G
X06880.1/1-162          UAGUGCUUGUACCUCGCCUUGUACUA.UGCUUG..G.G.GUAGCGCUGUG
X69331.1/1-139          ..GGGUCGAUGGCCCACAUUGCACUU.GGUGGG.UG.CGUCGGCCCA.UC
Z11882.1/353-508        U.AGGCUUGUGACCUCCAUUGCACUU.UGGAGG..GGUGCCUGCCUA.AG
X14419.1/178-338        U.AGGUUGGUGACCAUCAUUGCACUU.UGAAGG..GGUGCCCGCCUA.AG
#=GC SS_cons            >.<<<......<<<.<<...........>>..>..>.>.....>>>..<<

X55773.1/387-534        GACUGGCUAA...GGU..CAGCU.CCGGAUGCAUCAUUUUUGAGUU..CG
AE003745.3/26197-26359  AUUAUUCCUAAUGUGA..AUAA.CUCGUGCGUGUAAUUUUUGGUAG..CC
X01091.1/442-605        AUUUCCCCAAAUGCGG...GAAACUCGACUGCAUAAUUUGUGGUAG..UG
X75936.1/1034-1194      AUUCCCUCAAACGUAG...GGAACUCGGGCGUAUUAUUUAUGGUAG..CG
L22246.1/5536-5699      GCAGUCCCGAGUUGGGAU.UGG..CCAACAGCAUAAUUUUUGCGUU....
X70869.1/1-161          UCGGCCCUUC....GG..GUGUCCGGCAGGGCUAAAUUUUUGUUAGGC.U
X06880.1/1-162          UGCGGGGCAA..GUCC...UCGUUACAACGGAAUAAUUUCUGGCAGG..C
X69331.1/1-139          AUCU.CCCCAA.GUGG...GAGAAUGAACGUCAUAAUUUGUGGUAG...A
Z11882.1/353-508        GUCGACCUAA..GUGG..UCG.GGCCUAUGUCAUAAUUUGUUGCUG...U
X14419.1/178-338        GUCGGCCCAA..GUGG..UCG.AGCCUACGUCAUAAUUUGUUGCUG...A
#=GC SS_cons            <<.<.<<.......>>...>>...>>>.>>>>.................<

X55773.1/387-534        U....CCCUCAUU....UGGGGCA.....
AE003745.3/26197-26359  GGGA.AUGGCGUU.C.GCGCCG.UCCCGA
X01091.1/442-605        GGGG.ACUGCGUU.C.GCGCUCUCCCCUG
X75936.1/1034-1194      GGGA.UCUGCGUU.C.GCGCU.AUCCCCU
L22246.1/5536-5699      UGGGGACAGCGUU.C.GCGCUUCCCCGCC
X70869.1/1-161          GAGGACCCGCGCUAU.GCGCGGCCUCGGC
X06880.1/1-162          CGUUGCACGCGCU.U.GCGCGUCCUCGGC
X69331.1/1-139          GGGGGUAC.....................
Z11882.1/353-508        GGGGGCCUGCGUU.CUGCGCG..CC....
X14419.1/178-338        GGGGGCCUGCGUU.C.GCGCGGCCCCUGC
#=GC SS_cons            <<<<..<<<<<......>>>>>.>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00004:0
#=GF ID  U2:0

X63784.1/412-602    AUACCU.UCU.CGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCA
X63786.1/549-738    AUACCU.UCU.CGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCA
M58665.1/571-712    AUAUCU.UCU.CGGCUAUUUAGCUAAGAUCAU.GUUUAUAAACUGUUCUUAUCA
X04244.1/85-276     AUCGCU.UCU.CGGCCUUAUGGCUAACAUCAAAGUGUAGUAUCUGUUCUUAUCA
K02457.1/1-187      AUCGCU.UCU.CGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCA
M12856.1/361-551    AUCGCU.UCU.CGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCA
X54113.1/230-415    AUCGCU.UCU.CGGCCUUUUGGCUAAGAUCAU.GUGUAGUAUCUGUUCUUUUCA
L22247.1/6321-6513  AUCGCU.UCU.CGGCCUAUUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCA
X51375.1/389-580    AUCGCU.UCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCG
X56322.1/513-709    AUACCUUUCU.CGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCA
#=GC SS_cons        .......<<<..<<<<....>>>>.>>>.....................<<<<<

X63784.1/412-602    GUGUGAAAACUGAUACUGUCCCUACUAGGGACAUGU.GGUUUCACAUUAAUUUU
X63786.1/549-738    GUGUGAAAACUGAUACUGUCCCUAC.UGGGACAUGU.GGUUUCACAUUAAUUUU
M58665.1/571-712    GAGUAACUCCUGAUAC.UGCCU..UC.GGGCA.AA..GGAAUAGAAAUUAUAUC
X04244.1/85-276     GCUUAACAUCUGAUAGUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUU
K02457.1/1-187      GUUUAAUAUCUGAUACGUCCCCUAUCUGGGGACCA..UAUAUUAAAUGGAUUUU
M12856.1/361-551    GUUUAAUAUCUGAUACGUCCUCGAUGAGAGGACUU..UAUAUUAAACGGAUUUU
X54113.1/230-415    GAAUAAUAUCUGAAAUGCUGCUCAUCGAGCAGCAAG.UAUAUUAAUCUGAUUUU
L22247.1/6321-6513  GCUUAAUCUCUGAUAUGUGAUCAAC.CGAUCACUUC.GAGAUUAAUCUAUUUUU
X51375.1/389-580    UAUUAACCUACGGUAUACACUCGAA.UGAGUGUAAUAAAGGUU.AUAUGAUUUU
X56322.1/513-709    GUUUAAUAUCUGAUAUGUGGGCCAUUGGUCCACAU..GAUAUUAACUCAAUUUU
#=GC SS_cons        <........>>>>>>.<<<<<<<...>>>>>>>.....................

X63784.1/412-602    UCACAGGG.GUCG.GA..UUCA.CUAGUGGCUUGCCCUAG..U.CCCGACGC.G
X63786.1/549-738    UCAAGGG..GUCG.GAUA.UAU.UAGU.GGCUUGCCACUG.GU.CCCGACGC.U
M58665.1/571-712    UCAAG.............................................GU.U
X04244.1/85-276     UGGAAUCA.GACG.GAGU.GCUA..GG.ACCUUGCUCC..ACC.UCUGUCGC.G
K02457.1/1-187      UGGAACAG.GGAGUUGGA..AGA..AG.AGCUUGCUCU..GUC.CACUCCAC.G
M12856.1/361-551    UGGGCGCG.GGAGUUGGA..CCC..GG.AGCUUGCUCC..CUC.CGCUCCGC.G
X54113.1/230-415    UGGAUGAUCGGCCAUGGA.AUAG...G.GGCUUGCCG....UC.CUGGCCACGG
L22247.1/6321-6513  GCAACCUU.GGAA.GG..UUCG.UAGG.GGCUUGCUCCUC...GCCUUCCGC.G
X51375.1/389-580    UGGAACCUAGGGA.AGACUC.....GG.GGCUUGCUCUC..GA.NUUCCCAA.G
X56322.1/513-709    UUAAGGGG.AAGA.GUCUGUUA.AGGUUAGCUUGCUACCU.GG.GUUCUUGU.G
#=GC SS_cons        .........<<<<.<<<<.......<<.<<<..>>>>>...>>.>>>>>>...<

X63784.1/412-602    GUUGC..CCUUGGCCUGCA.CGCU.ACUAAGG...AGCGGCUACCCCUG
X63786.1/549-738    GUUGC..CCUUAGCAUGCA.CGUA.ACUAAGG...AGUGGCUAACCCUA
M58665.1/571-712    GUUUC..CCUGGAGUUCCA.CGUU..UCCAGG.....GAGCAACUC...
X04244.1/85-276     GGUUGG.CCCGGUAUUGCA.GUAC.CGCCGGGAUUUUGGCCCAAC....
K02457.1/1-187      CAUCGA.CCUGGUAUUGCA.GUACCU.CCAGG..ACCGGUGCACU....
M12856.1/361-551    CAUCGU.CCCGGUAUGGCA.GUACCU.CCGGG..CACGGUGCACCUCCC
X54113.1/230-415    GUUGG..CCCGGU.UUGCA.CUAC.UGCCGGG...AUCGGCCACAC...
L22247.1/6321-6513  GGUCGA.CCCGGUAUUGCACCUACCU.CCGGG..AACGCCCACGCCCCC
X51375.1/389-580    GGUCGUCCUGGCG.UUGCA.CUGC..UGCCGGNN.UCGGCCCANNCCCC
X56322.1/513-709    CGUCGCCCAUGCG.UUGCA.CUAC..UGCACGGGCCUGGCGCACCCCAC
#=GC SS_cons        <<<<<..<<<<<<.............>>>>>>....>>>>>>.......
//
# STOCKHOLM 1.0

#=GF AC  RF00004:1
#=GF ID  U2:1

X63786.1/549-738  AUACCU.UCU.CGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGU
M23361.1/1-186    AUUCUC.UCU.UUGCCUUUUGGCUUAGAUCAA.GUGUAGUAUCUGUUCUUUUCAGU
X04241.1/85-276   AUCGCU.UCU.CGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCAGC
X00093.1/360-550  AUCGCU.UCU.CGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGU
M12856.1/361-551  AUCGCU.UCU.CGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGU
X51379.1/254-444  AUCGCU.UCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCGUA
X51372.1/210-400  AUCGCU.UCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCGUA
S72337.1/1-193    AUACCUUUCU.CGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGU
M72888.1/1-195    AUACCUUUCU.CGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCAGU
Z37973.1/1-173    AUACCUUUCU.CGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCAUAUUAGU
#=GC SS_cons      .......<<<..<<<<....>>>>.>>>.....................<<<<<<.

X63786.1/549-738  GUGAAAACUGAUA..CUGUCCCUAC.UGGGACAUGU.GGUUUCACAUUAAUUUUUC
M23361.1/1-186    UUAAUCGCUGAAA..U.CACCUCACUGAGGUG.UU..CCGAUUAAUCUUGUUUUUG
X04241.1/85-276   UUAACAUCUGAUA..GUUCCUCCAUUGGAGGACAACAAAUGUUAAACUGAUUUUUG
X00093.1/360-550  UUAAUAUCUGAUA..CGUCCCCUAUCUGGGGACCA..UAUAUUAAAUGGAUUUUUG
M12856.1/361-551  UUAAUAUCUGAUA..CGUCCUCGAUGAGAGGACUU..UAUAUUAAACGGAUUUUUG
X51379.1/254-444  UUAACCUACGGUA..UACACUCGAA.UGAGUGUAAUAAAGGUU.AUAUGAUUUUUG
X51372.1/210-400  UUAACCUACGGUA..UACACUCGAA.UGAGUGUAAUAAAGGUU.AUAUGAUUUUUG
S72337.1/1-193    UUAAUAUCUGAUA..UGUGGGCCAUGUGUCCACAAC.GAUAUUAAAUUUAUUUUUU
M72888.1/1-195    UUAAUAUCUGAUA..UGUGGGCCAUUGGUCCACAC..GAUAUUAACUCAAUUUUGU
Z37973.1/1-173    AUAUUACAUUAUACU............................AACUCUAUUUUUG
#=GC SS_cons      .......>>>>>>...<<<<<<<...>>>>>>>.......................

X63786.1/549-738  AAGGG..GUCG.GAUA.UAU.UAGUGGCUUGCCACUG.......GUCCCGACGC.U
M23361.1/1-186    GUUUGA.GUUG.GAAAGC...CUCUGGCUUGCUAUGC.......UUUCCGACACUG
X04241.1/85-276   GAAUCA.GACG.GAGU.GCUA..GGAGCUUGCUCC........ACCUCUGUCGC.G
X00093.1/360-550  GAACAG.GGAGAUGGA..AGA..AGAGCUUGCUCU........GUCCACUCCAC.G
M12856.1/361-551  GGCGCG.GGAGUUGGA..CCC..GGAGCUUGCUCC........CUCCGCUCCGC.G
X51379.1/254-444  GAUCCUAGGAA.AGACUC.....GGGGCUUGCUCC.........GACUUUCCGC.G
X51372.1/210-400  GAACCUAGGGA.AGACUC.....GGGGCUUGCUCC.........GACUUCCCAA.G
S72337.1/1-193    GUGGG..GUGG.GUCCACCA.CAGUAGCUUGCUAUUG.......GGGCCCACAU.G
M72888.1/1-195    AAGGGG.AAGA.GUCCAUUA.AGGUAGCUUGCUACCU.......GGGCUCUUGG.G
Z37973.1/1-173    AGG....GGAU.GUCC.AUA.CGGU.GCUUGCUAUUGUGAUUCAGGACCUUCAA.G
#=GC SS_cons      .......<<<<.<<<<.......<<<<<..>>>>>.........>>>>>>>>...<

X63786.1/549-738  GUUGC..CCUUAGCAUGCACGUA.ACUAAGG...AGUGGCUAACCCUA
M23361.1/1-186    GUGUU..CUUGCUAUUGCACUUACUGGCAAG...CGACGCCGAA....
X04241.1/85-276   GGUUGG.CCCGGUAUUGCAGUAC.CGCCGGGAUUUUGGCCCAAC....
X00093.1/360-550  CAUCGA.CCUGGUAUUGCAGUACCU.CCAGG..ACCGGUGCACUUCUC
M12856.1/361-551  CAUCGU.CCCGGUAUGGCAGUACCU.CCGGG..CACGGUGCACCUCCC
X51379.1/254-444  GGUCGUACUGGCG.UUGCACUGC..UGCCGGG.CUCGGCCCAGUCCCC
X51372.1/210-400  GGUCGUCCUGGCG.UUGCACUGC..UGCCGGG.CUCGGCCCAGUCCCC
S72337.1/1-193    CGUCGCCUGGGCG.UUGCACUGC..UGCCCUGGCCCGGCGCACCC...
M72888.1/1-195    CGUCGC.CAUGCG.UUGCACUAC..UGCAUGGUCCUGGCGCACCCCAC
Z37973.1/1-173    CGUCCU.CUGGCG.UUGCACUAC..UGUCUUGACUUGACGCACCCCCA
#=GC SS_cons      <<<<<..<<<<<<............>>>>>>....>>>>>>.......
//
# STOCKHOLM 1.0

#=GF AC  RF00004:2
#=GF ID  U2:2

AY007785.1/849-1041  AUACCU.UCU.CGGCCUUUU.GGCUAAGAUCAA.GNGUAGUAUCUGUUCUUAU
AY007788.1/537-679   AUAUCU.UCU.CGGCUAUUU.AGCUAAGAUCAU.GUUUAUAAACUGUUCUUAU
AY205287.1/148-4     AUAUCU.UCU.GGGCUAUUU.AGCUAAGAUCAA.GUUUUUAAACUGUUCUUAU
X55772.1/223-412     AUUCUC.UCU.UUGCCUUUU.GGCUUAGAUCAA.GUGUAGUAUCUGUUCUUUU
AF053589.1/90-279    CCACCUCUCA.AAGCUCAU..AGCUUUGAUCAA.GUGUAGUAUCUGUUCUUGU
X04241.1/85-276      AUCGCU.UCU.CGGCCUUAU.GGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAU
X51378.1/335-525     AUCGCU.UCUUCGGCUUAUU.AGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAU
L25918.1/1-181       AUCGCU.UCU.CGGCUCUCUGAGCUAAGAUCAU.GUGUAGUAUCUGUUCUUUG
X15930.1/1-195       AUACCUUUCU.CGGCCUUUU.GGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAU
X06473.1/389-584     AUACCUUUCU.CGGCCUUUU.GGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAU
#=GC SS_cons         .......<<<..<<<<.....>>>>.>>>.....................<<<

AY007785.1/849-1041  CAGCUUAAUAUCUGAUA..CAGCACAC.UU.GUGUGUCGA..UGAGUUGAUGU
AY007788.1/537-679   CAGAGUAACUCCUGAUA..C.UGCCU...UC.GGGCA.AA..GGAAUAGAAAU
AY205287.1/148-4     CAGAGUAAUUCCUGAUA....UGGGNC.UUUGUCCCA.....GGAAUA...GA
X55772.1/223-412     CAGUUUAAUCGCUGAAA...UCACCUC.ACUGAGGUGUUU..CCGAUUAAUCU
AF053589.1/90-279    CAGUGUGACAGCUGACAAACUAGCUCC.UU.GGAGCUA....GAA......UA
X04241.1/85-276      CAGCUUAACAUCUGAUA..GUUCCUCC.AUUGGAGGACAACAAAUGUUAAACU
X51378.1/335-525     CGUAUUAACCUACGGUA..UACACUCG.AA.UGAGUGUAAUAAAGGUU.AUAU
L25918.1/1-181       CAGUGUAAUUU.UGCAA.CGGGUCUCUAAACUGAGACCAA..UAAAUUACCUG
X15930.1/1-195       CAGUUUAAUAUCUGAUA..UGUGGGCC.AUUGGUCCACAC..GAUAUUAAAUU
X06473.1/389-584     CAGUUUAAUAUCUGAUA..UGUGGGCC.AUCGGCUCACAC..GAUAUUAACUC
#=GC SS_cons         <<<........>>>>>>...<<<<<<<....>>>>>>>...............

AY007785.1/849-1041  GAAUUUUUCACGGGG.GUGGCGGGUAGCU.CUGAGGCAAACUCAGA...GU.C
AY007788.1/537-679   .UAUAACUCAAG.........................................
AY205287.1/148-4     .AACCGUUGAUCUC.............UCA.......................
X55772.1/223-412     .UGUUUUUGGUUUGA.GUUG.GAAAGC...CUCUGGCUUGCUAUGC...UU.U
AF053589.1/90-279    .UGCUGGUG.UGUGU.GUGG.AUGC.UUU.GACAGGCUUGCUUGUAGGGGCCA
X04241.1/85-276      .GAUUUUUGGAAUCA.GACG.GAGU.GCUA..GGAGCUUGCUCC....ACC.U
X51378.1/335-525     .GAUUUUUGGAACCUAGGGA.AGACUC.....GGGGCUUGCUCC.....GA.C
L25918.1/1-181       .UAUUUUUCACCUC.CGGAC.GGGU.U......GAGCUUGCUC.....AAC.C
X15930.1/1-195       .UAUUUCUUGAGGGG.AAGA.GUCCACCA.CAAUAGCUUGCUAUUC...GG.U
X06473.1/389-584     .UAUCUUUUAAGGGA.GAAA.GCCCGCUA.UGAUAGCUUGCUAUCU...GG.G
#=GC SS_cons         ................<<<<.<<<<.......<<<<<..>>>>>.....>>.>

AY007785.1/849-1041  CGCCACAC.....GUGUUGC.CCUGGAGCUGCACUAC.A.UCAGGAG.UUGGC
AY007788.1/537-679   ......GU.....UGUUUC..CCUGGAGUUCCACGUU..UCCAGG....GGAG
AY205287.1/148-4     ......AG.....CGUUCU..UCCGGAGUUCCACGUG..UCCGGA...UGGAG
X55772.1/223-412     C.CGACACU....GGUGUU..CUUGCUAUUGCACUAC.UGGCAAG...CGACG
AF053589.1/90-279    U.GCACACACCAGGCAGACUCCCGGAAGUUG...UUCCG.UCCGG...AG.CU
X04241.1/85-276      C.UGUCGC.....GGGUUGG.CCCGGUAUUGCAGUAC.CGCCGGGAUUUUGGC
X51378.1/335-525     U.UCCCAA.....GGGUCGUCCUGGCG.UUGCACUGC..UGCCGGG.CUCGGC
L25918.1/1-181       C.GUCCAC.....GGGUCGG.CCUCGUAUUGCAUUGCCU.CGAGG...UUGGC
X15930.1/1-195       C.UCUUGU.....GUGUCGCUUUUGCG.UUGCACUAU..AGCAAUUG.CUGGC
X06473.1/389-584     C.UUCCAC.....GAGUCGCCCAUGCG.UUGCACUAC..UGCACGGGCCUGGC
#=GC SS_cons         >.>>>>.......<<<<<<..<<<<<<............>>>>>>....>>>>

AY007785.1/849-1041  ACACCC...
AY007788.1/537-679   CAACUC...
AY205287.1/148-4     CGUCA....
X55772.1/223-412     CCGAAUCUU
AF053589.1/90-279    GCACUUUUU
X04241.1/85-276      CCAAC....
X51378.1/335-525     CCAGUGCCC
L25918.1/1-181       UCA......
X15930.1/1-195       GCACCCCAC
X06473.1/389-584     UCAACCCGC
#=GC SS_cons         >>.......
//
# STOCKHOLM 1.0

#=GF AC  RF00004:3
#=GF ID  U2:3

AF326335.1/1-142      AUAUCU.UCU.CGGCUUUUUAGCUAAGAUCAU.GUUUAUAAACUGUUCUUAU
X56457.1/243-390      AUAUCU.UCU.CGGCCAUUUAGCUAAGAUCAA.GUUUUUAAACUGUUCUUAU
M14625.1/332-488      AUC....UCU.UUGCCUUUUGGCUUAGAUCAA.GUGUAGUAUCUGUUCUUUU
M23361.1/1-186        AUUCUC.UCU.UUGCCUUUUGGCUUAGAUCAA.GUGUAGUAUCUGUUCUUUU
X04244.1/85-276       AUCGCU.UCU.CGGCCUUAUGGCUAACAUCAAAGUGUAGUAUCUGUUCUUAU
AF287992.1/4918-5108  AUCGCU.UCU.CGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAU
X54113.1/230-415      AUCGCU.UCU.CGGCCUUUUGGCUAAGAUCAU.GUGUAGUAUCUGUUCUUUU
X51374.1/284-474      AUCGCU.UCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAU
X51375.1/389-580      AUCGCU.UCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAU
Z37972.1/1-174        AUACCUUUCU.CGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCAUAU
#=GC SS_cons          .......<<<..<<<<....>>>>.>>>.....................<<<

AF326335.1/1-142      CAGAGUAACUCCUGAUA...UUGCCU..UC.GGGCAAA...GGAAUA...CA
X56457.1/243-390      CAGAUUAAUUCCUGAUA...UGGGCU..UC.GUCCCA....GGAAUA...GA
M14625.1/332-488      CAGUGUAACAACUGAAA..UGA.CCUCAAUGAGGCUCA.............U
M23361.1/1-186        CAGUUUAAUCGCUGAAA..U.CACCUCACUGAGGUG.UU..CCGAUUAAUCU
X04244.1/85-276       CAGCUUAACAUCUGAUA..GUUCCUCCAUUGGAGGACAACAAAUGUUAAACU
AF287992.1/4918-5108  CAGUUUAAUAUCUGAUA..CGUCCUCUAUCCGAGGACAA..UAUAUUAAAUG
X54113.1/230-415      CAGAAUAAUAUCUGAAA..UGCUGCUCAUCGAGCAGCAAG.UAUAUUAAUCU
X51374.1/284-474      CGUAUUAACCUACGGUA..UACACUCGAA.UGAGUGUAAUAAAGGUU.AUAU
X51375.1/389-580      CGUAUUAACCUACGGUA..UACACUCGAA.UGAGUGUAAUAAAGGUU.AUAU
Z37972.1/1-174        CAGUAUAUUACAUUAUACUG............................ACUC
#=GC SS_cons          <<<........>>>>>>...<<<<<<<...>>>>>>>...............

AF326335.1/1-142      AA....UGAUCGCA...........CUAG.......................
X56457.1/243-390      AACCGCUGAUCUC.............UCA.......................
M14625.1/332-488      UACCUUUUAAUUU..GUUACAAUACACAU.......................
M23361.1/1-186        UGUUUUUGGUUUGA.GUUG.GAAAGC...CUCUGGCUUGCUAUGC.......
X04244.1/85-276       GAUUUUUGGAAUCA.GACG.GAGU.GCUA..GGACCUUGCUCC........A
AF287992.1/4918-5108  GAUUUUUGGAGCAG.GGAGAUGGA..AUA..GGAGCUUGCUCC........G
X54113.1/230-415      GAUUUUUGGAUGAUCGGCCAUGGA.AUAG...GGGCUUGCCG..........
X51374.1/284-474      GAUUUUUGGAACCUAGGGA.AGACUC.....GGGGCUUGAUCC.........
X51375.1/389-580      GAUUUUUGGAACCUAGGGA.AGACUC.....GGGGCUUGCUCUC........
Z37972.1/1-174        UAUUUUUUAGG....GGAU.GUCC.AUA.CGGUAGCUUGCUAUUGGGAUUCA
#=GC SS_cons          ...............<<<<.<<<<.......<<<<<..>>>>>.........

AF326335.1/1-142      ........GU.UGUUUC..CCUGGAGUUCCACCUU..UCCAGG....GGAGC
X56457.1/243-390      ........AG.UGUUCC..UCCGGAGUUUCGCGUG..UCCGGA...UGGAGC
M14625.1/332-488      UUUUUGGCACCCAAAAU..AAUAAA.AUGGACGGG..AAGAGA...CUUUUU
M23361.1/1-186        UUUCCGACACUGGUGUU..CUUGCUAUUGCACUUACUGGCAAG...CGACGC
X04244.1/85-276       CCUCUGUCGC.GGGUUGG.CCCGGUAUUGCAGUAC.CGCCGGGAUUUUGGCC
AF287992.1/4918-5108  UCCACUCCAC.GCAUCGA.CCUGGUAUUGCAGUACCU.CCAGG..AACGGUG
X54113.1/230-415      UCCUGGCCACGGGUUGG..CCCGGU.UUGCACUAC.UGCCGGG...AUCGGC
X51374.1/284-474      GACUUCCCAA.GGGUCGUCCUGGCG.UUGCACUGC..UGUCGGG.CUCGGCC
X51375.1/389-580      GANUUCCCAA.GGGUCGUCCUGGCG.UUGCACUGC..UGCCGGNN.UCGGCC
Z37972.1/1-174        GGACCUUCAA.GCGUCCU.CUGGCA.UUGCACUAC..UGUCUUGGCUUGACG
#=GC SS_cons          >>>>>>>>...<<<<<<..<<<<<<............>>>>>>....>>>>>

AF326335.1/1-142      AACU....
X56457.1/243-390      GCUUCCUU
M14625.1/332-488      AAGC....
M23361.1/1-186        CGAA....
X04244.1/85-276       CAAC....
AF287992.1/4918-5108  CACUUCCC
X54113.1/230-415      CACAC...
X51374.1/284-474      CAGUCCCC
X51375.1/389-580      CANNCCCC
Z37972.1/1-174        CACCCCCA
#=GC SS_cons          >.......
//
# STOCKHOLM 1.0

#=GF AC  RF00004:4
#=GF ID  U2:4

X63786.1/1152-1341  AUACCU.UCU.CGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCA
X56456.1/243-390    AUAUCU.UCU.CGGCCAUUUAGCUAAGAUCAA.GUUUUCAAGCUGUUCUUAUCA
AY205287.1/148-4    AUAUCU.UCU.GGGCUAUUUAGCUAAGAUCAA.GUUUUUAAACUGUUCUUAUCA
X55772.1/223-412    AUUCUC.UCU.UUGCCUUUUGGCUUAGAUCAA.GUGUAGUAUCUGUUCUUUUCA
X04256.1/85-275     AUCGCU.UCU.CGGCCUUAUGGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCA
X00093.1/360-550    AUCGCU.UCU.CGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCA
X51379.1/254-444    AUCGCU.UCUUCGGCUUAUUAGCUAAGAUCAAAGUGUAGUAUCUGUUCUUAUCG
X71483.1/1-191      AUACCUUUCU.CGGCCUUUUGGCUCAGAUCAU.GUGUAGUAUCUGUUCUUAUAA
Z37972.1/1-174      AUACCUUUCU.CGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCAUAUCA
X06475.1/589-783    AUACCUUUCU.CGGCCUUUUGGCUAAGAUCAA.GUGUAGUAUCUGUUCUUAUCA
#=GC SS_cons        .......<<<..<<<<....>>>>.>>>.....................<<<<<

X63786.1/1152-1341  GUGUGAAAACUGAUA..CUGUCCCUAC.UGGGACAUGU.GGUUUCACAUUAAUU
X56456.1/243-390    GAUUAAUUCCUGAUA...UGGGCU..UC.GUCCCA....GGAAUA...GAAACC
AY205287.1/148-4    GAGUAAUUCCUGAUA....UGGGNCUUUGUCCCA.....GGAAUA...GAAACC
X55772.1/223-412    GUUUAAUCGCUGAAA...UCACCUCACUGAGGUGUUU..CCGAUUAAUCUUGUU
X04256.1/85-275     GCUUAACAUCUGAUA..GUUCCUCCAUUGGAGGCAACA.AAUGUUAAACUGAUU
X00093.1/360-550    GUUUAAUAUCUGAUA..CGUCCCCUAUCUGGGGACCA..UAUAUUAAAUGGAUU
X51379.1/254-444    UAUUAACCUACGGUA..UACACUCGAA.UGAGUGUAAUAAAGGUU.AUAUGAUU
X71483.1/1-191      GCUUAAUCGCUUAUA..UGGUUCUCAUUGAGAACCU...GCGAUUAACUUUAAU
Z37972.1/1-174      GUAUAUUACAUUAUACUG............................ACUCUAUU
X06475.1/589-783    GUUUAAUAUCUGAUA..UGUGGGCCAUCGGCCCACAC..GAUAUUAACUCUAUU
#=GC SS_cons        <........>>>>>>...<<<<<<<...>>>>>>>...................

X63786.1/1152-1341  UUUCAAGGG..GUCG.GACAAACUA..GUGGCUUGCCAC.........UGGUCC
X56456.1/243-390    GCUGAUCUC.............UCA.............................
AY205287.1/148-4    GUUGAUCUC.............UCA.............................
X55772.1/223-412    UUUGGUUUGA.GUUG.GAAAGC...CUCUGGCUUGCUAUGC.......UU..UC
X04256.1/85-275     UUUGGAAUCA.GACG.GAGU.GCUA..GGAGCUUGCUCC........ACC..UC
X00093.1/360-550    UUUGGAACAG.GGAGAUGGA..AGA..AGAGCUUGCUCU........GUC..CA
X51379.1/254-444    UUUGGAUCCUAGGAA.AGACUC.....GGGGCUUGCUCC.........GA..CU
X71483.1/1-191      AUUUUAGGGG.GUCA.AGGCAAUG.GGGGCGCUUGCGUCCC.......GC..CG
Z37972.1/1-174      UUUUAGG....GGAU.GUCC.AUA.CGGUAGCUUGCUAUUGGGAUUCAGG..AC
X06475.1/589-783    UUUUAAGGGA.GAAA.GCCCACUA.AGAUAGCUUGCUAUCU.......GG..GC
#=GC SS_cons        ...........<<<<.<<<<.......<<<<<..>>>>>.........>>..>>

X63786.1/1152-1341  CGACGC.UGUUGC..CCUUAGCAUGCACGUA.ACUAAGG...AGUGGCUAACCC
X56456.1/243-390    ....AG.UGUUCC..UCCGGAGUUUCGCGUG..UCCGGA...UGGAGCGCUUCC
AY205287.1/148-4    ....AG.CGUUCU..UCCGGAGUUCCACGUG..UCCGGA...UGGAGCGUCA..
X55772.1/223-412    CGACACUGGUGUU..CUUGCUAUUGCACUAC.UGGCAAG...CGACGCCGAAUC
X04256.1/85-275     UGUCGC.GGGUUGG.CCCGGUAUUGCAGUAC.CGCCGGGAUUUUGGCCCAAC..
X00093.1/360-550    CUCCAC.GCAUCGA.CCUGGUAUUGCAGUACCU.CCAGG..ACCGGUGCACUUC
X51379.1/254-444    UUCCGC.GGGUCGUACUGGCG.UUGCACUGC..UGCCGGG.CUCGGCCCAGUCC
X71483.1/1-191      CGACAG.CUUGGCA.GGAGGC.UUACACUAC..CUCUCU...UGCCGAGCACCC
Z37972.1/1-174      CUUCAA.GCGUCCU.CUGGCA.UUGCACUAC..UGUCUUGGCUUGACGCACCCC
X06475.1/589-783    UUUCAA.GAGUCGCCCAUGCG.UUGCACUAC..UGCAAGGG.CUGGCUCAACCC
#=GC SS_cons        >>>>...<<<<<<..<<<<<<............>>>>>>....>>>>>>.....

X63786.1/1152-1341  UA
X56456.1/243-390    UU
AY205287.1/148-4    ..
X55772.1/223-412    UU
X04256.1/85-275     ..
X00093.1/360-550    UC
X51379.1/254-444    CC
X71483.1/1-191      CA
Z37972.1/1-174      CA
X06475.1/589-783    GC
#=GC SS_cons        ..
//
# STOCKHOLM 1.0

#=GF AC  RF00436:0
#=GF ID  UnaL2:0

AC145764.2/2295-2245       UGCAAUGUAAGUCGCUUUGGAUAAAAGCAUCAGCU..AAAUGACC..
AC144487.1/66140-66085     CUUAUUGUACGUCGCUUUGGAUAAAAGCGUCCGCU..AAAUGACAUG
AL732411.14/41691-41637    UUCUCUGUAAGUCGCUUUGGAUAAAAGCGUCUGCU..AAAUGACAA.
AL954371.6/110643-110589   UUGUUUGUUUGUUGCUUUAGAUAAAAGCAUCUGCU..AAAUGAUUA.
AL953899.7/42720-42666     UCAUUUGUAAGUCGCUUUGGAUAAAAGCGUCUGCU..AAAUGACUA.
AL928824.13/119883-119934  UCAUUUGUAAGUCGCUUUGGAUAAAAGCAUCUGCC..AAAUCAGU..
BX088699.4/105142-105196   UCAUUUGUAAGUCGCUUUGGAUAAAAGCGUCUGCU..AAAUCAGU..
AL928701.7/182087-182139   UCAUGUGUAAGUCGCUUUGAAUAAAAGCAUCUACU..CAAUGAGU..
BX569783.4/61302-61355     ACGG.UUUGAGUUACUUUGGAUAAAAGCAUCUGCU..A.CUGGCUU.
AL935128.13/109621-109676  GCAAUAGUA.GAUGCUUUGGUUAAAAUCCUCUGCUAAAAAUGACUA.
#=GC SS_cons               <<<<<<<<<...<<<<<<.....>>>>>>..>>>...>>>>>>....

AC145764.2/2295-2245       ...UGUA.AUGC
AC144487.1/66140-66085     UAAUGUA.AUGU
AL732411.14/41691-41637    .AAUGAAGGCAA
AL954371.6/110643-110589   .AAUGUAAAUGU
AL953899.7/42720-42666     .AAUGUAAAUGA
AL928824.13/119883-119934  ...GGUCCCCAA
BX088699.4/105142-105196   GGUUCUCAAAGU
AL928701.7/182087-182139   .AAAGCA.CUAU
BX569783.4/61302-61355     AAAUGUGAAUGU
AL935128.13/109621-109676  .AAUGUAAAUGU
#=GC SS_cons               ............
//
# STOCKHOLM 1.0

#=GF AC  RF00436:1
#=GF ID  UnaL2:1

AB029447.1/1210-1265    CUUAUUGUU.CGUCGCUUUGGAUAAAAGCGUC..UGCCAAAUAAAUG.UA
AC145764.2/53928-53984  CUUAUUGUA.CGUCGCUUUGGAUAAAAGCGUC..CGCUAAAUGACAUGUG
BX890619.6/6528-6474    UCAUUUGCA.GAUCGCUUUGGAUAAAAGCGUC..UGCUAAAUGUUU..CA
AL954371.6/99505-99453  AGCACAGCU.AGUCGCUUUGGACAAAAGCAUC..UGCUAAAUGACA....
BX248111.7/42817-42871  ACAGGUGUA.AGUCGCUUUGGAUAAAAGCGUC..UGUUAUAUGCAUA..C
BX005334.9/36002-35945  UCACACAUGCAGUCACUUUGGAUAAAAGAGUGUAUGAUAAAUGAGUA..A
BX569783.4/77351-77301  UGCAACGUA.GGUUGCUUUGGAUA..AGUGUC..UGCUAAAUGCAUA..A
BX004821.5/46607-46553  UCAUUUGUA.AGUCGCUUUGGAUAAAAGCGUC..UGCUAAAUGACUA..A
BX005301.9/81584-81530  UGAUUUGUA.AGUCGCUUUGGAUAAAAGCGUC..GGCUAAAUGACUA..A
AL928834.15/4130-4184   UCAAUUGUA.AGCCGCUUUGGACAAAAGCAUC..UGCUAAAUCAAG..GA
#=GC SS_cons            <<<<<<<<<....<<<<<<.....>>>>>>....>>>.>>>>>>......

AB029447.1/1210-1265    AUGUAAUAUA
AC145764.2/53928-53984  AUGUAAUUUG
BX890619.6/6528-6474    GUGUAAAUAA
AL954371.6/99505-99453  AUGUAAAUAU
BX248111.7/42817-42871  AUGUAAAUGC
BX005334.9/36002-35945  CUGUAAAUGU
BX569783.4/77351-77301  A..UAAAUGU
BX004821.5/46607-46553  AUGUAAAUGU
BX005301.9/81584-81530  AUGUAAAUUA
AL928834.15/4130-4184   UUCUGAAACU
#=GC SS_cons            ..........
//
# STOCKHOLM 1.0

#=GF AC  RF00436:2
#=GF ID  UnaL2:2

AC145510.2/144559-144615  UGCAAUGUAAGUCGCUUUGGAUAAAAGAGUGAGCUAAAUAACAUGUAA
AC145764.2/6538-6588      CGAAAUGAUUGUCGCUUUGGAUAAAAGCAUCAGCUAAAUGUAA.....
AL929391.10/13836-13883   UCAUCUCUUUGUUGCUCUGGAUAAAAGCAUCUGCUAAAU.........
AL928701.7/176380-176432  CGAUUUGUAAGUCACUUUGGAUAAAAGUAUCUGGUAAAUGUAA...AA
BX664748.7/7629-7575      CUGGAUGUAUGUCGCUUUGGAUAAAAGCGUCUGCAGAAUACAUA..AA
BX569783.4/77351-77301    UGCAACGUAGGUUGCUUUGGAUA..AGUGUCUGCUAAAUGCAUA..AA
AL928834.15/61498-61552   UCAUUUGUAAGUCGCUUUGGAUAAAAGCGUCUGCUAAAUGACUA..AA
BX004821.5/36020-35966    AUGACAGUACAUCGCUUUGGAUAAAAGCGUCUGCUAAAUGACUA..AA
BX649566.3/34014-33960    UCAAUUUUAAGUAGCUUUGGACAAAAGUGUGUGCCAAAUGACUA..AA
AL928834.15/4130-4184     UCAAUUGUAAGCCGCUUUGGACAAAAGCAUCUGCUAAAUCAAG..GAU
#=GC SS_cons              <<<<<<<<<...<<<<<<.....>>>>>>..>>>.>>>>>>.......

AC145510.2/144559-144615  UGUAAUAAA
AC145764.2/6538-6588      UGUA.AUGU
AL929391.10/13836-13883   UGUACAGCU
AL928701.7/176380-176432  UGUA.AUGU
BX664748.7/7629-7575      UGUAAAAUG
BX569783.4/77351-77301    ..UAAAUGU
AL928834.15/61498-61552   UGUAAAUGU
BX004821.5/36020-35966    UGUAAAUGA
BX649566.3/34014-33960    UGUAAAUGU
AL928834.15/4130-4184     UCUGAAACU
#=GC SS_cons              .........
//
# STOCKHOLM 1.0

#=GF AC  RF00436:3
#=GF ID  UnaL2:3

AC145764.2/2295-2245       UGCAAUGUAAGUCGCUUUGGAUAAAAGCAUCAGCU..AAAUGACC..
AC146543.2/7696-7640       CUUAUUGUAAGUCGCUUUGGAUAAAAGCGUCAGCU..AAGUUACA.C
AC145510.2/122254-122304   ..AUUUCAAACCGGCUUUGGAUAAAAGCAUCUGUA..AAA..ACUA.
AB001842.1/105-159         AGGACUGUAAGUCGCUUUGGAUAAAAGCGUCUGCU..AAAUGGCAU.
AL954371.6/55095-55041     UCAUUUGUAAGUCGCUUUGGAUAAAAGCAUCUGCU..AAAUGAAUA.
BX537162.5/125134-125080   UAAUUGAUGAAUAAUUUUGGACAAAAGCAUCUGCU..UAAUGACUA.
BX005334.9/52316-52370     UCAAUUGUCUGUCGCUUUGGACAAAAGUGUCUUCU..AAAUGACUA.
AL928701.7/19905-19959     AUAAAAGGAAUAGGCUUUGGAUAAAAGCGUCUGCU..AAAUGACUA.
AC139110.4/26593-26647     UCAAUUGUAAGUCGCUUUGGACAAAAGCGUCUGCU..AAAUGACUA.
AL935128.13/109621-109676  GCAAUAGUA.GAUGCUUUGGUUAAAAUCCUCUGCUAAAAAUGACUA.
#=GC SS_cons               <<<<<<<<<...<<<<<<.....>>>>>>..>>>...>>>>>>....

AC145764.2/2295-2245       ....UGUA.AUGC
AC146543.2/7696-7640       GUAAUGUAACAAU
AC145510.2/122254-122304   ..AAAAUAAUUAC
AB001842.1/105-159         ..AUUAUAUUAUU
AL954371.6/55095-55041     ..AAUGUAAAAGU
BX537162.5/125134-125080   ..AAUUUAAAUGA
BX005334.9/52316-52370     ..AAUGUAAAUAA
AL928701.7/19905-19959     ..AAUGUAAAUGU
AC139110.4/26593-26647     ..AAUGUAAAAUG
AL935128.13/109621-109676  ..AAUGUAAAUGU
#=GC SS_cons               .............
//
# STOCKHOLM 1.0

#=GF AC  RF00436:4
#=GF ID  UnaL2:4

AB001858.1/305-359         AUGACUGUAAGUCGCUUUGGAUAAAAGCGUCUGCUAAAUGGCAU...
AL591676.10/16205-16259    CCCUUUGUAAGCUGCUUUGAAUAAAAGCGUCUGCUAAAUAAAUA...
AL807818.14/154315-154373  AUUAUUGUAAGUCGCUUUGGAUAAAAGCGUCUGCUAAAUGGCUAAAU
AL928834.15/187161-187215  ACUACAGCAAGCUGCUCUGAAUGAAAGCAUCUGCUAAACGACUA...
AL935128.13/73646-73700    UCAUCUGUAAAUCGCUUUGGAUAAAAGCGUCCGCUAAAUAACUA...
BX664748.7/7629-7575       CUGGAUGUAUGUCGCUUUGGAUAAAAGCGUCUGCAGAAUACAUA...
AL592062.11/88031-88081    UCAAUUGUAAGUCGCUUUGGACAAAAUCGUCUGCUAAAUGAA.....
BX088699.4/24632-24686     UGCAAUGUAAAUCACUUUGGAUAAAGGCUUCUGCCAAAUGCAUA...
BX293564.5/115366-115419   UUAUUUGUACGUCACUUUGGAUAAAAGCAUCUUCUAAAUAAAU....
AF397467.1/9309-9363       UCAAUUGAAAGUUGCUUUGGAUAAAAGCGUCUGCUAAAUGAAUA...
#=GC SS_cons               <<<<<<<<<...<<<<<<.....>>>>>>..>>>.>>>>>>......

AB001858.1/305-359         .AUUAUUAUUAU
AL591676.10/16205-16259    .UGUGUAAAUAU
AL807818.14/154315-154373  AUAUGUAAAUGU
AL928834.15/187161-187215  .AAGGUAAAACA
AL935128.13/73646-73700    .AAUGUAUAUGU
BX664748.7/7629-7575       .AAUGUAAAAUG
AL592062.11/88031-88081    ...UGUAAAUGU
BX088699.4/24632-24686     .AAUGUAAAAUG
BX293564.5/115366-115419   .AAUUUACAGAC
AF397467.1/9309-9363       .AAUGUAAAUGU
#=GC SS_cons               ............
//
# STOCKHOLM 1.0

#=GF AC  RF00181:0
#=GF ID  sno_14q_I_II:0

AC121784.2/75479-75547    AGGACCGAUGAUGAGAUCUGAUGG.UGUCUGAGUGUUUCUCGAUGACA
AC121784.2/46958-47030    UGGAUCAAUGAUGACCAGCGGUAGCCGUAUGAUUCAUGGAUCAUGA.C
AC121784.2/51879-51950    UGGAUCUAUGAUGACCUCUGGUGC.CGUAUGAGUCGGGGAUCAUGA.U
AC121784.2/78528-78602    CAGAACAAUGAUGAGAUCUGGUGG.CAUCUGAAUUUUUCUUGAUGGCA
AB076245.1/105-176        AGGGUUAGUCUUGACCUCUGGUAG.CACACAAUUUGUGGAUGAUGG.G
AC121784.2/77918-77991    AGGACCGAUGAUGAGAUCUGGUGG.CGUUUGAGUGAUACUCCAUGA.A
AL132709.5/175950-175879  UGGAUCAAUGAUGAGUACCCUGGGGUGUCUGAAUCUUGGAUUUUGA.U
AL132709.5/134553-134482  UGGAUCGAUGAUGAGCACUGGUGG.AGUAUGAGUCACAUACGAUGA.A
AL132709.5/128363-128289  UGAGCAAGCGAUGACAGCCGGUGG.UGUGUGAGUCAUGGAGGAUGA.A
AL132709.5/169743-169666  GGGACCAAUGAUAAUGACUGUUGG.GGUAUGAGUCAGUGAGGUUGA.A
#=GC SS_cons              .<<<<<..........................................

AC121784.2/75479-75547    UGAA...........CAGAUAUCUGAGGUCAGG
AC121784.2/46958-47030    UACA.......GAUCUGGGAGUCUGAGUUCCAC
AC121784.2/51879-51950    CACA.......GGUCUGGGAGUCUGAGGUCCAC
AC121784.2/78528-78602    UCCA.....UGUCAAGAGAAAUCUGAAGUCAGG
AB076245.1/105-176        UACA.......GGUCUGGAAGUCUGAAGUCUAU
AC121784.2/77918-77991    CGCCAA....GUAUCCAGAAAUCUGAUG.CCUU
AL132709.5/175950-175879  UAAAC........CCUAUAACUCUGAGGUCCAU
AL132709.5/134553-134482  UAC.......GUGUCUGGAACUCUGAGGUCCAU
AL132709.5/128363-128289  UACUAA....GUGCCUGGAACUCUGAGGUUCAA
AL132709.5/169743-169666  UAACAGUUU.GUAUCUGGAAAUCUGAGGUCCAA
#=GC SS_cons              ..........................>>>>>..
//
# STOCKHOLM 1.0

#=GF AC  RF00181:1
#=GF ID  sno_14q_I_II:1

AC121784.2/46958-47030    UGGAUCAAUGAUGACCA...............GCGGUAGCCGUAUG.A
AC121784.2/48567-48638    AGGGUUAGUCUUGACCU...............CUGGUAG.CACACG.A
AC121784.2/77918-77991    AGGACCGAUGAUGAGAU...............CUGGUGG.CGUUUG.A
AB014878.1/886-973        UGGAUCAUUGAUGACCAAAAAAAAAAAAACAUCUGGGAGUCCUCUG.A
AB014883.1/1284-1367      UGGAUCAUUGAUGACCAAAAAAAAUCAU....CUGGGAGUCCUCUG.A
AL132709.5/182043-181969  UGGACCAGUGAUGAAUA...............UCAUGGGGUUUCUG.A
AL132709.5/145122-145048  UGGAUCAAUGAUAAAAC...............UUGCUGG.CAUAUG.A
AL132709.5/158545-158469  UGAACUAGUGGUGAUGG...............CUUGUGG.CAUAUUUA
AL132709.5/133438-133369  UGGUUCAGUGUUGACUA...............CUGGUGU.CGUGUG.A
AL132709.5/169743-169666  GGGACCAAUGAUAAUGA...............CUGUUGG.GGUAUG.A
#=GC SS_cons              .<<<<<..........................................

AC121784.2/46958-47030    UUCAUGGAUCAUGACUACA......GAUCUGGGAGUCUGAGUUCCAC
AC121784.2/48567-48638    UUUGUGGAUGAUGGGUACA......GGUCUGGAAGUCUGAAGUCUAU
AC121784.2/77918-77991    GUGAUACUCCAUGAACGCCAA...GUAUCCAGAAAUCUGAUG.CCUU
AB014878.1/886-973        GACAUCCAUGAUGACCACAAC......AUUGGGAGUCUGAGGUCCAC
AB014883.1/1284-1367      GACAUCCAUGAUGACCACAAC......AUUGGGAGUCUGAGGUCCAC
AL132709.5/182043-181969  AACAACAUUUUUGAUUAAAC....CCAUCUGCAACUCUGAGGUCCAU
AL132709.5/145122-145048  AUCUUGGAUAAUGGAUGAUAC...GUGUGUGGAACUCUGAGGUCCAA
AL132709.5/158545-158469  GUCACAGAUGAUGAAUAAAUAC..AUGCCUGAGACUCUGAGGUUAGU
AL132709.5/133438-133369  GUCAU..ACAAUGAAUACA......UGUCUGGAACUCUGAGGCCCAU
AL132709.5/169743-169666  GUCAGUGAGGUUGAAUAACAGUUUGUAUCUGGAAAUCUGAGGUCCAA
#=GC SS_cons              ........................................>>>>>..
//
# STOCKHOLM 1.0

#=GF AC  RF00181:2
#=GF ID  sno_14q_I_II:2

AC121784.2/82332-82403    UUGGUUG.AUGAUGACCA...........CCGGUGG..CAUUUG.ACU
AB014883.1/1284-1367      UGGAUCA.UUGAUGACCAAAAAAAAUCAUCUGGGAGU.CCUCUG.AGA
AL132709.5/175950-175879  UGGAUCA.AUGAUGAGUA...........CCCUGGGG.UGUCUG.AAU
AL132709.5/136822-136751  UGGAUCG.AUGGUGACUG...........UUGAUGG..CAUAUG.ACU
AL132709.5/135542-135471  UGGAUCG.AUGAUGACUA...........CUGGUGG..CGUAUG.AGU
AL132709.5/129680-129609  UGGAUCA.AUCAUGACUA...........CUGGUAU..UGGAUG.GGU
AL132709.5/180473-180397  UGGAUCA.AUGAUGAGUA...........UGCGUGGGGCAUCUG.AAU
AL132709.5/142597-142509  UGGACUG.UUGAUGACAA...........GUGGUGG..CUUAUGUGGU
AL132709.5/156819-156747  UUGAUGAUAUGAUGGCCA...........CUGGUGG..CUUAUG.AGU
AL132709.5/128363-128289  UGAGCAA.GCGAUGACAG...........CCGGUGG..UGUGUG.AGU
#=GC SS_cons              .<<<<<..........................................

AC121784.2/82332-82403    CAUACAUGAUGACUUU................GAGUCUGAAACACCAA
AB014883.1/1284-1367      CAUCCAUGAUGACCACAAC................AUUGGGAGUCUGA
AL132709.5/175950-175879  CUUGGAUUUUGAUUAAAC.................CCUAUAACUCUGA
AL132709.5/136822-136751  CACAUAUGAUGAGUAC................GUAUCUGGAACUCUGA
AL132709.5/135542-135471  CUUUUGCGAUGAAUAC................GUGUCUAGAACUCUGA
AL132709.5/129680-129609  CUUCGUCAGUGAAUGCC................UAUCUGGAACUCUGA
AL132709.5/180473-180397  CAAAUAUUCUGAUUAUACC.............CUGUCUGUAUCUCUGA
AL132709.5/142597-142509  UGUACAUGCUGGUUGUAUAUGAAGAAUAUUACAUAUCUGAAACUUUGA
AL132709.5/156819-156747  CUUAUACAGUGAAUACA................UGUUUGAAACUCUGA
AL132709.5/128363-128289  CAUGGAGGAUGAAUACUAA.............GUGCCUGGAACUCUGA
#=GC SS_cons              ................................................

AC121784.2/82332-82403    GAUCCAA
AB014883.1/1284-1367      GGUCCAC
AL132709.5/175950-175879  GGUCCAU
AL132709.5/136822-136751  GGUCUGU
AL132709.5/135542-135471  GGUCCGU
AL132709.5/129680-129609  GGUCCAU
AL132709.5/180473-180397  GGUCCAU
AL132709.5/142597-142509  GGUCCAA
AL132709.5/156819-156747  GGUCUGU
AL132709.5/128363-128289  GGUUCAA
#=GC SS_cons              >>>>>..
//
# STOCKHOLM 1.0

#=GF AC  RF00181:3
#=GF ID  sno_14q_I_II:3

AC121784.2/51879-51950    UGGAUCU.AUGAUGACCU...............CUGGUGC...CGUAU
AC121784.2/52659-52730    UGUAUUU.GUGAUGAUCA...............CUGGUGC...CAGAU
AC121784.2/69447-69528    UGCAGCACCUGAUGCCCCCGGAUU.........GCUGUGG...CAUGU
AB014878.1/886-973        UGGAUCA.UUGAUGACCAAAAAAAAAAAAACAUCUGGGAGU..CCUCU
AB014878.1/1781-1860      .GGAUCA.UUGAUGACCAUAAAAG.........AUGUGGGAGUCGUCU
AL132709.5/136822-136751  UGGAUCG.AUGGUGACUG...............UUGAUGG...CAUAU
AL132709.5/149496-149422  UGGACCA.AUGAUGACAA...............CUGCCGG...CGUAU
AL132709.5/129680-129609  UGGAUCA.AUCAUGACUA...............CUGGUAU...UGGAU
AL132709.5/182043-181969  UGGACCA.GUGAUGAAUA...............UCAUGGGG..UUUCU
AL132709.5/167225-167151  UGAGCCA.GUGAUGAAAA...............CUGGUGG...CAUAG
#=GC SS_cons              .<<<<<..........................................

AC121784.2/51879-51950    GAGUCGGGGAUCAUGAUCACA...GGUCUGGGAGUCUGAGGUCCAC
AC121784.2/52659-52730    GAGUUAUGCAUCAUGGUCACA...GGUCUGCGAGUCCGAGGUCCAC
AC121784.2/69447-69528    GAGGCAUGUAUGUUGAAUAUCAUAUGUCUAGAACUCUGAUCUAAAA
AB014878.1/886-973        GAGACAUCCAUGAUGACCACAAC...AUUGGGAGUCUGAGGUCCAC
AB014878.1/1781-1860      GAAACAUGCAUGAUGACCACAAC...AUUGCGAGUCUGAGGUCCAC
AL132709.5/136822-136751  GACUCACAUAUGAUGAGUAC...GUAUCUGGAACUCUGAGGUCUGU
AL132709.5/149496-149422  GAGUGUUGGGUGAUGAAUAAUACGUGUCUAGAACUCUGAGGUCCAA
AL132709.5/129680-129609  GGGUCUUCGUCAGUGAAUGCC...UAUCUGGAACUCUGAGGUCCAU
AL132709.5/182043-181969  GAAACAACAUUUUUGAUUAAAC.CCAUCUGCAACUCUGAGGUCCAU
AL132709.5/167225-167151  AAGUCAAGGAUGCUGAAUAAUGUGUGUCUAGAACUCUGAGGUUCAA
#=GC SS_cons              .......................................>>>>>..
//
# STOCKHOLM 1.0

#=GF AC  RF00181:4
#=GF ID  sno_14q_I_II:4

AC121784.2/82332-82403    UUGGUUGAUGAUGACCA..............CCGGUGG.CAUUUGACU
AC121784.2/48567-48638    AGGGUUAGUCUUGACCU..............CUGGUAG.CACACGAUU
AC121784.2/52659-52730    UGUAUUUGUGAUGAUCA..............CUGGUGC.CAGAUGAGU
AB014879.1/10-96          UGGAUCAUUGAUGACCAAAAAAAAAAAACAUCUGGGAGUCCUCUGAGA
AL132709.5/136822-136751  UGGAUCGAUGGUGACUG..............UUGAUGG.CAUAUGACU
AL132709.5/129680-129609  UGGAUCAAUCAUGACUA..............CUGGUAU.UGGAUGGGU
AL132709.5/145774-145703  UAGAUCAGUGAUGACUA..............CUGUUGG.UGUAUGAGU
AL132709.5/178148-178075  UGGACCAAUGAUGAG.A..............UUGGAGGGUGUCUGAAU
AL132709.5/145122-145048  UGGAUCAAUGAUAAAAC..............UUGCUGG.CAUAUGAAU
AL132709.5/148004-147935  UGGACCAAUUAUGACUA..............CUG......GUGUGAGU
#=GC SS_cons              .<<<<<..........................................

AC121784.2/82332-82403    CAUACAUGAUGACUUU...GAGUCUGAAACACCAAGAUCCAA
AC121784.2/48567-48638    UGUGGAUGAUGGGUACA...GGUCUGGAAGUCUGAAGUCUAU
AC121784.2/52659-52730    UAUGCAUCAUGGUCACA...GGUCUGCGAGUCCGAGGUCCAC
AB014879.1/10-96          CAUCCAUGAUGACCACAAC...AUUGGGAGUCUGAGGUCCAC
AL132709.5/136822-136751  CACAUAUGAUGAGUAC...GUAUCUGGAACUCUGAGGUCUGU
AL132709.5/129680-129609  CUUCGUCAGUGAAUGCC...UAUCUGGAACUCUGAGGUCCAU
AL132709.5/145774-145703  CAUAUACGAUGAAUACA...UGUCUGAAAUUCUGAGGUCCAA
AL132709.5/178148-178075  CAAAAAUUUUGAUUAAAG.CCAUCUGUAACUCUGAGGUCCAU
AL132709.5/145122-145048  CUUGGAUAAUGGAUGAUACGUGUGUGGAACUCUGAGGUCCAA
AL132709.5/148004-147935  CACGCAUAAUGAACACCACGUGUCUGGAACUCUGAGGUCCAA
#=GC SS_cons              ...................................>>>>>..
//
# STOCKHOLM 1.0

#=GF AC  RF00005:0
#=GF ID  tRNA:0

J01390.1/6861-6932      CAGGUUAGAGCCAGGU.GGU..UAGGCGUCUUGUUUGGGUCAAGAAA...
J05395.1/2325-2252      GGUUUCGUGGUCUAGUCGGUU.AUGGCAUCUGCUUAACACGCAGAAC...
K00228.1/1-82           GGUUGUUUGGCCGAGC.GGUCUAAGGCGCCUGAUUCAAGCUCAGGU.AUC
AC009395.7/99012-98941  GGCUCAAUGGUCUAGG.GGU..AUGAUUCUCGCUUUGGGUGCGAGAG...
J04815.1/3159-3231      AGAGCUUGCUCCCAAA.GCU..UGGGUGUCUAGCUGAUAAUUAGACU...
M20972.1/1-72           AGGGCUAUAGCUCAGC.GGU..AGAGCGCCUCGUUUACACCGAGAAU...
M68929.1/151018-150946  CGCGGGAUAGAGUAAUUGGU..AACUCGUCAGGCUCAUAAUCUGAAU...
X00360.1/1-73           CCGACCUUAGCUCAGUUGGU..AGAGCGGAGGACUGUAGAUCCUUAG...
X12857.1/421-494        GCGGAUGUAGCCAAGU.GGAUCAAGGCAGUGGAUUGUGAAUCCACCA...
M16863.1/21-94          GGGCUCGUAGCUCAGA.GGAUUAGAGCACGCGGCUACGAACCACGGU...
#=GC SS_cons            <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>.....

J01390.1/6861-6932      .......UUGUUAUGUUCGAAUCAUAA.UAACCUGA
J05395.1/2325-2252      .......GUCCCCAGUUCGAUCCUGGG.CGAAAUCG
K00228.1/1-82           GUAAGAUG.CAAGAGUUCGAAUCUCUU.AGCAACCA
AC009395.7/99012-98941  .......GUCCCGGGUUCAAAUCCCGG.UUGAGCCC
J04815.1/3159-3231      .......AUCAAGGGUUAAAUUCCCUUCAAGCUCUA
M20972.1/1-72           .......GUCUACGGUUCAAAUCCGUA.UAGCCCUA
M68929.1/151018-150946  .......GUUGUGGGUUCGAAUCCGAC.UCCCGCCA
X00360.1/1-73           .......GUCACUGGUUCGAAUCCGGU.AGGUCGGA
X12857.1/421-494        .......UGCGCGGGUUCAAUUCCCGU.CAUUCGCC
M16863.1/21-94          .......GUCGGGGGUUCGAAUCCCUC.CUCGCCCA
#=GC SS_cons            ..........<<<<<.......>>>>>.>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005:1
#=GF ID  tRNA:1

M16450.1/142-214      GGCUUUUUAGCUCAGCAGGU.AGAGCAACCGGCUGUUAACCGGUUU......
J01390.1/6449-6519    AAGAGUAUAGUUUAAU.GGU.AAAACUGUAAGCUUCAACCUUAUAU......
X02173.1/54-135       GCUAUUUUGGUGGAAUUGGUAGACACGAUACUCUUAAGAUGUAUU.ACUUUA
AF200843.1/3014-3079  UCUAAUAUGGCAGAUU.....AGUGCAAUAGAUUUAAGCUCUAUAU......
X14848.1/3824-3891    AGUAAGGUCAGCUAA..CU..AAGCUAUCGGGCCCAUACCCCGAAA......
J01435.1/6776-6846    ACUUUUAUAGGAUAGA.AGU.AAUCCAUUGGUCUUAGGAACCAAAA......
AC067849.6/4771-4840  CACUGUAAAGCUAAC......UUAGCAUUAACCUUUUAAGUUAAAG......
AF134583.1/1599-1666  AGAAAUUUAGGUUAAAUAC..AGACCAAGAGCCUUCAAAGCCCUCA......
U25144.1/1062-991     GGCUCCUUAGCAUAGU.GGU.AUUGCGCUUCCCUAGUAAGGAAGAG......
X07377.1/52-124       ACCUACUUAACUCAGU.GGUUAGAGUAUUGCUUUCAUACGGCGGGA......
#=GC SS_cons          <<<<<<<..<<<<.........>>>>.<<<<<.......>>>>>........

M16450.1/142-214      ....GUCACAGGUUCGAG..CCCUGUAAAAGCCG
J01390.1/6449-6519    ....U.UCUUAGUUCAAA..UCUAAGUACUCUUG
X02173.1/54-135       UAGUA.UGAAGGUUCAAA..UCCUUCAAAUAGCA
AF200843.1/3014-3079  ....A.UAAAGU.AUUUU...ACUUUUAUUAGAA
X14848.1/3824-3891    ....A.UGUUGGUUAAAC...CCUUCCCGUACUA
J01435.1/6776-6846    ....A.CCUUGGUGCAAC..UCCAAAUAAAAGUA
AC067849.6/4771-4840  ....AUUAAGAGAACCAACACCUCUUUACAGUGA
AF134583.1/1599-1666  ....G.UAAGU.UGCAAU....ACUUAAUUUCUG
U25144.1/1062-991     ....GUCAUGAGUUCGAU..CCUCAUAGGAGCCU
X07377.1/52-124       ....GUCAUUGGUUCAAA..UCCAAUAGUAGGUA
#=GC SS_cons          .......<<<<<.........>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005:2
#=GF ID  tRNA:2

U18089.1/221-293         GGGGCUGUAGCUCAGUUGGG..AGAGCACCUGCUUUGCAAGCAGGGG..
J01390.1/6449-6519       AAGAGUAUAGUUUAAU.GGU..AAAACUGUAAGCUUCAACCUUAUAU..
X66594.1/101-182         GGAAAAUU.GAUCAUC.GGCA.AGAUAAGUUAUUUACUAAAUAAUA.GA
M10217.1/9797-9871       CACUAAGAAGCUAAAUAGGGCAUUAGCGACAGCCUUUUAAGCUGUAG..
X52392.1/5025-5096       GGAAGCGUGCCUGAAC.AA...AAAGGAUCACUAUGAUAAAGUGAAC..
X52392.1/6573-6508       GACUCUGUAGUGAAGU.......UCAUAAUGAGUUGCAAACUCGUUG..
J01435.1/6776-6846       ACUUUUAUAGGAUAGA.AGU..AAUCCAUUGGUCUUAGGAACCAAAA..
AL590385.23/26129-26058  UCCCUGGUGGUCUAGU.GGUU.AGGAUUCGGCGCUCUCACCGCCGCG..
AJ400848.1/29803-29731   GCCCCCAUCGUCUAGC.GGUUCAGGACAUCUCUCUUUCAAGGAGACA..
X13558.1/186-115         UGGGGCGUAGCCAAGC.GGU..AAGGCAACGGGUUUUGGUCCCGCUA..
#=GC SS_cons             <<<<<<<..<<<<..........>>>>.<<<<<.......>>>>>....

U18089.1/221-293         ..........GUCAUCGGUUCGAG..ACCGGUCAGCUCCA
J01390.1/6449-6519       ..........U.UCUUAGUUCAAA..UCUAAGUACUCUUG
X66594.1/101-182         AUAUUAUUUCU.GAGGAGUUCGAA..UCUCCUAUUUUCCG
M10217.1/9797-9871       ..........AUUGGUGACUCCCA..ACCACCCUUAAUGA
X52392.1/5025-5096       ..........A.UAGAGGUAUAACAACCCUCUCACUUCCU
X52392.1/6573-6508       ..........A.UGUACACUAAAG...UGUGCCGGGGUCU
J01435.1/6776-6846       ..........A.CCUUGGUGCAAC..UCCAAAUAAAAGUA
AL590385.23/26129-26058  ..........G.CCCGGGUUCGAU..UCCCGGUCAGGGAA
AJ400848.1/29803-29731   ..........A.CGGGGAUUCGAC..UUCCCCUGGGGGUA
X13558.1/186-115         ..........UUCGGAGGUUCGAA..UCCUUCCGUCCCAG
#=GC SS_cons             .............<<<<<.........>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005:3
#=GF ID  tRNA:3

X16748.1/1-73           GGCCUGUUGGUGAAGC..GGUU.AACACACACGGUUUUCAUCCGUGGA..
AF041468.1/43811-43739  GGGCUCAUCGUCUAAU..GGAUCAGGACAGGGACCUUCUAAGUCUCUA..
J01390.1/12028-12098    AGCGGGUUGAUGUAAU..AGU..AACAUAUAUGGCUCAUGCCCAUAAU..
X05226.1/35-116         GGCGCGAUGGCAGAGU..GGUCUAAUGCGUGAGACUUCAAAUCUCAU.UU
J01373.1/73-144         GGCGCCGUGGCGCAGU..GGA..AGCGCGCAGGGCUCAUAACCCUGAU..
X55342.1/30-101         GUUCCGUUGGCGUAAU..GGU..AACGCGUCUCCCUCCUAAGGAGAAG..
M19493.1/263-336        GGGCUAUUAGCUCAGUU.GGUU.AGAGCGCACCCCUGAUAAGGGUGAG..
X03602.1/660-731        UCCCGUAUGGUCUAGU..GGUU.AGGAUACCUGGCUUUCACCCAGGAG..
X14848.1/2654-2728      AUUAGGGUGGCAGAGCCAAGUA.AUUGCGUAAGACUUAAAACCUUGUU..
AB017063.1/58819-58900  GUGGACGUGCCGGAGU..GGUU.AUCGGGCAUGACUAGAAAUCAUGU.GG
#=GC SS_cons            <<<<<<<..<<<<...........>>>>.<<<<<.......>>>>>....

X16748.1/1-73           ...........CACACGGGUUCGAACCCCGUACAGGCUA
AF041468.1/43811-43739  ...........A.UGUAGGUUCGAAUCCUACUGAGCCUA
J01390.1/12028-12098    ...........A.UUUAGGUGCAACUCCUAAAUCCGCUA
X05226.1/35-116         CUU...CGGAAG.CGUCGGUUCAAAUCCGGCUCGCGUCG
J01373.1/73-144         ...........GUCCUCGGAUCGAAACCGAGCGGCGCUA
X55342.1/30-101         ...........ACUGCGGGUUCGAGUCCCGUACGGAACG
M19493.1/263-336        ...........GCCCCUGGUUCGAAUCCAGGAUGGCCCA
X03602.1/660-731        ...........G.CUCGGGUUCGAUUCCCGGUACGGGAA
X14848.1/2654-2728      ...........CCCAGAGGUUCAAAUCCUCUCCCUAAUA
AB017063.1/58819-58900  GC.UUU.GCCCG.CGCAGGUUCGAAUCCUGCCGUUCACG
#=GC SS_cons            ..............<<<<<.......>>>>>>>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00005:4
#=GF ID  tRNA:4

M26977.1/379-453      GGGGCCAUAGGGUAGCCUGGUCUAUCCUUUGGGCUUUGGGAGCCUGAG....
AF105125.1/104-176    GGGGGUUUAGCUCAGUU.GGU..AGAGCGCCUGCUUUGCAAGCAGGAU....
Z11874.1/40212-40285  CGGGAUGUAGCGCAGUUUGGU..AGCGCAUUGCAUUUGGGAUGCAAGG....
Z11880.1/281-353      GCCCCCGUAGCCCAAU..GGAU.AAGGCGUUCGCUUCCUAAGCGAAAG....
X14822.1/1-73         UGAAUCGUAGACUAAUA.GGU..AAGUCACCAAAAUUUGAGUUUGGAA....
K02456.1/141-212      AGCAGAGUGGCGCAGC..GGA..AGCGUGCUGGGCCCAUAACCCAGAG....
V00654.1/12038-12108  ACUUUUAAAGGAUAGU..AGUU.UAUCCGUUGGUCUUAGGAACCAAAA....
X17318.1/109-39       GGCGGCAUGGCCAAGU..GGU..AAGGCAGGGGACUGCAAAUCCUUUA....
AJ243756.1/1-71       GGCUAGGUAACAUAAU..GGA..AAUGUAUCGGACUGCAAAUCCUGGA....
X67736.1/4837-4923    GGAGAGAUGGCCGAGU..GGUUUAAGGCGUAGCAUUGGAACUGCUAU.GUAG
#=GC SS_cons          <<<<<<<..<<<<...........>>>>.<<<<<.......>>>>>......

M26977.1/379-453      ............A.CCCCGGUUCAAAUCCGGGUGGCCCCA
AF105125.1/104-176    ............GUCAGCGGUUCGAGUCCGCUAACCUCCA
Z11874.1/40212-40285  ............GUCGCAGGUUCGAAUCCUGUCAUCCCGA
Z11880.1/281-353      ............AUUGCGGGUUCGAGUCCCGCCGGAGGUA
X14822.1/1-73         ............UUUGUUUGUUCGAAUCAAACCGGUUCAA
K02456.1/141-212      ............GUCGAUGGAUCGAAACCAUUCUCUGCUA
V00654.1/12038-12108  ..............AAUUGGUGCAACUCCAAAUAAAAGUA
X17318.1/109-39       ............C.CCCCAGUUCAAAUCUGGGUGCCGCCU
AJ243756.1/1-71       ............A.UGACGGUUCGACCCCGUCCUUGGCCU
X67736.1/4837-4923    GCUUUUGUUUAC..CGAGGGUUCGAAUCCCUCUCUUUCCG
#=GC SS_cons          ...............<<<<<.......>>>>>>>>>>>>.
//
