# STOCKHOLM 1.0

#=GF AC  RF00008:0
#=GF ID  Hammerhead_3:0

AJ536612.1/206-152  UCACCGUCGGAAAGUG.UGCGCUUUCCCUGAUGAGCCCGA..............
AJ241839.1/282-334  GAUGAGUC.GUGCUA......AGCACACUGAUGAGUCUCUGA............
AJ247116.1/133-53   .UCCAGUCGAGACCUGAAGUGGGUUUACUGAUGAGGCUGUGGAGAGAGCGAAAG
M17439.1/1-48       ........ACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGU..............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ536612.1/206-152  .............AAGGGCGAAACGGUAC
AJ241839.1/282-334  ...........AAUGAGACGAAACUCAUA
AJ247116.1/133-53   CUUUACUCCCACACAAGCCGAAACUGGA.
M17439.1/1-48       .............GAGGACGAAACAGGAC
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:1
#=GF ID  Hammerhead_3:1

AJ295018.1/58-1    ACAGGGUCUGACAAA......CCGUCACUGAAGACGUUCAACUU...........
AJ005318.1/56-3    CAUAAGUCUGGGCUA......AGCCCACUGAUGAGCCGUUGA.............
AJ247116.1/133-53  .UCCAGUCGAGACCUGAAGUGGGUUUACUGAUGAGGCUGUGGAGAGAGCGAAAGC
D00685.1/1-46      ........GCCAGACGU.GGACCCGGCCUGAUGAGUCCGAAA.............
#=GC SS_cons       .<<<<<<.<<<<<.........>>>>>.......<<<<.................

AJ295018.1/58-1    .........GCGUUGAACAGAAACUCUGC
AJ005318.1/56-3    ...........GAUACGGUGAAACUUAUG
AJ247116.1/133-53  UUUACUCCCA.CACAAGCCGAAACUGGA.
D00685.1/1-46      ...............GGACGAAACAGUA.
#=GC SS_cons       ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:2
#=GF ID  Hammerhead_3:2

AJ295015.1/58-1     ACAGAGUCUGACAAA......CCGUCACUGAAGACGUUCAACUU..........
AJ536619.1/206-152  CCACCGUCGGAAAGUG.UGUACUUUCCCUGAUGAGUCCGA..............
AJ241828.1/56-3     CAUAAGUCUGGGUUA......AGCCCACUGAUGAGCCGUUGA............
Y14700.1/133-53     .UCCAGUCGAGACCUGAAGUGGGUUUCCUGAUGAGGCUGUGGAGAGAGCGAAAG
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ295015.1/58-1     ..........GCGUUGAACAGAAACUCUGC
AJ536619.1/206-152  ..............AAGGACGAAACGGUAC
AJ241828.1/56-3     ............GAUACGGCGAAACUUAUG
Y14700.1/133-53     CUUUACUCCCA.CACAAGCCGAAACUGGA.
#=GC SS_cons        ................>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:3
#=GF ID  Hammerhead_3:3

AJ295015.1/58-1    ACAGAGUCUGACAAA......CCGUCACUGAAGACGUUCAACUU...........
AJ550899.1/56-3    CAUAAGUCUGGGCUA......AGCCCACUGAUGAGCCUUUGC.............
AJ247123.1/132-52  .UCCAGUCGAGACCUGAAGUGGGUUUCCUGAUGAGGCUGUGGAGAGAGCGAAAGC
D00685.1/1-46      ........GCCAGACGU.GGACCCGGCCUGAUGAGUCCGAAA.............
#=GC SS_cons       .<<<<<<.<<<<<.........>>>>>.......<<<<.................

AJ295015.1/58-1    .........GCGUUGAACAGAAACUCUGC
AJ550899.1/56-3    ...........GAUAAGGCGAAACUUAUG
AJ247123.1/132-52  UUUACUCCCG.CACAAGCCGAAACUGGA.
D00685.1/1-46      ...............GGACGAAACAGUA.
#=GC SS_cons       ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:4
#=GF ID  Hammerhead_3:4

AJ005312.1/56-3    CAAAAGUCUGGGCUA......AGCCCACUGAUGAGCCGCUGA.............
AJ247122.1/132-52  .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUAUUGC
M33000.1/55-110    ACGCUGUCUGUACUUGUAUC.AGUACACUGACGAGUCCCU...............
D00685.1/1-46      ........GCCAGACGU.GGACCCGGCCUGAUGAGUCCGAAA.............
#=GC SS_cons       .<<<<<<.<<<<<.........>>>>>.......<<<<.................

AJ005312.1/56-3    ..........AAUGCGGCUAAACUUUUG
AJ247122.1/132-52  UUUACUCCCGCACAAGCCGAAACUGGA.
M33000.1/55-110    ...........AAAGGACGAAACAGCGC
D00685.1/1-46      ..............GGACGAAACAGUA.
#=GC SS_cons       ..............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:5
#=GF ID  Hammerhead_3:5

AJ536614.1/206-152  UCACCGUCGGAAAGUG.UGCGCUUUCCCUGAUGAGCCCAA..............
Y14700.1/133-53     .UCCAGUCGAGACCUGAAGUGGGUUUCCUGAUGAGGCUGUGGAGAGAGCGAAAG
AF170516.1/283-335  GAAGAGUC.GUGCUU......AGCACACUGAUGAGUCUCUGA............
Y12833.1/339-285    CCGCUAUAUGGGGAUGUGUG.UCCCUACUGACGAGUUCAA..............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ536614.1/206-152  .............AAGGGCGAAACGGUAC
Y14700.1/133-53     CUUUACUCCCACACAAGCCGAAACUGGA.
AF170516.1/283-335  ...........AAUGAGACGAAACUCUUC
Y12833.1/339-285    .............AAGAACGAAAUAGUUA
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:6
#=GF ID  Hammerhead_3:6

AJ295018.1/58-1     ACAGGGUCUGACAAA......CCGUCACUGAAGACGUUCAACUU..........
AJ536612.1/206-152  UCACCGUCGGAAAGUG.UGCGCUUUCCCUGAUGAGCCCGA..............
Y14700.1/133-53     .UCCAGUCGAGACCUGAAGUGGGUUUCCUGAUGAGGCUGUGGAGAGAGCGAAAG
AJ005321.1/281-333  GAAGAGUC.GUGCUA......AGCACACUGAUGAGUCUCUGA............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ295018.1/58-1     ..........GCGUUGAACAGAAACUCUGC
AJ536612.1/206-152  ..............AAGGGCGAAACGGUAC
Y14700.1/133-53     CUUUACUCCCA.CACAAGCCGAAACUGGA.
AJ005321.1/281-333  ............AAUGAGACGAAACUCUUG
#=GC SS_cons        ................>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:7
#=GF ID  Hammerhead_3:7

AJ536615.1/1-44     ........GGGUGGUG.UGUACCAUCCCUGAUGAGUCCAA..............
AJ550901.1/282-334  GAAGAGUC.GCGCUA......AGCGCACUGAUGAGUCUUUGA............
AJ247121.1/133-53   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCG
Y12833.1/339-285    CCGCUAUAUGGGGAUGUGUG.UCCCUACUGACGAGUUCAA..............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ536615.1/1-44     .............AAGGACGAAAUGG...
AJ550901.1/282-334  ...........GAUAAGACGAAACUCUUC
AJ247121.1/133-53   CUUUACUCCCGCACAAGCCGAAACUGGA.
Y12833.1/339-285    .............AAGAACGAAAUAGUUA
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:8
#=GF ID  Hammerhead_3:8

AJ295015.1/58-1     ACAGAGUCUGACAAA......CCGUCACUGAAGACGUUCAACUU..........
AJ550903.1/281-333  GAAGAGUC.GUGCUU......AGCACACUGAUGAGUCUCUGA............
AJ247122.1/132-52   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUAUUG
M17439.1/1-48       ........ACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGU..............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ295015.1/58-1     ..........GCGUUGAACAGAAACUCUGC
AJ550903.1/281-333  ............AAUGAGACGAAACUCUUU
AJ247122.1/132-52   CUUUACUCCCG.CACAAGCCGAAACUGGA.
M17439.1/1-48       ..............GAGGACGAAACAGGAC
#=GC SS_cons        ................>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:9
#=GF ID  Hammerhead_3:9

AJ241819.1/56-3    CAUAAGUCUGGGCUA......AGCCCACUGAUGAGCCGUUGA.............
AJ247121.1/133-53  .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCGC
M63666.1/246-192   CCGGUGUCUCAAGGUGCGUA.CCUUGACUGAUGAGUCCGA...............
D00685.1/1-46      ........GCCAGACGU.GGACCCGGCCUGAUGAGUCCGAAA.............
#=GC SS_cons       .<<<<<<.<<<<<.........>>>>>.......<<<<.................

AJ241819.1/56-3    ..........AAUACGGCGAAACUUUUG
AJ247121.1/133-53  UUUACUCCCGCACAAGCCGAAACUGGA.
M63666.1/246-192   ............AAGGACGAAACACCAG
D00685.1/1-46      ..............GGACGAAACAGUA.
#=GC SS_cons       ..............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:10
#=GF ID  Hammerhead_3:10

AJ536617.1/1-40     ........GGGUGGUGUGUA.CCACCCCUGAUGAGUCCGA..............
AJ536619.1/206-152  CCACCGUCGGAAAGUG.UGUACUUUCCCUGAUGAGUCCGA..............
AJ247122.1/132-52   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUAUUG
AJ005294.1/282-334  UAAGAGUC.GUGCUA......AGCACACUGAUGAGUCUCUGA............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ536617.1/1-40     .............AAGGACGAA.......
AJ536619.1/206-152  .............AAGGACGAAACGGUAC
AJ247122.1/132-52   CUUUACUCCCGCACAAGCCGAAACUGGA.
AJ005294.1/282-334  ...........AAUGAGACGAAACUCUUG
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:11
#=GF ID  Hammerhead_3:11

AJ295018.1/58-1     ACAGGGUC.UGACAAA......CCGUCACUGAAGACGUUCAACUU.........
AJ536617.1/1-40     .........GGGUGGUGUGUA.CCACCCCUGAUGAGUCCGA.............
AJ247113.1/134-53   .UCCAGUC.GAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCAAAU
AJ550910.1/282-336  GAAGAGUCCUGCGCUU......AGCGCACUGACGAGUCUCUGA...........
#=GC SS_cons        .<<<<<<..<<<<<.........>>>>>.......<<<<...............

AJ295018.1/58-1     ...........GCGUUGAACAGAAACUCUGC
AJ536617.1/1-40     ...............AAGGACGAA.......
AJ247113.1/134-53   UGCUUUACUCCCGCACAAGCCGAAACUGGA.
AJ550910.1/282-336  .............GAUGAGACGAAACUCUUC
#=GC SS_cons        .................>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:12
#=GF ID  Hammerhead_3:12

AJ295018.1/58-1  ACAGGGUCUGACAAA......CCGUCACUGAAGACGUUCAACUUGCGUUGAACAGAA
AJ536615.1/1-44  ........GGGUGGUG.UGUACCAUCCCUGAUGAGUCCAA........AAGGACGAA
AJ550900.1/56-3  CAUAAGUCUGGGCUA......AGCCCACUGAUGAGCCUUUGC....GACAAGGCGAA
J02386.1/42-95   UGUCCGUA.GUGGAUGUGUA.UCCACUCUGAUGAGUCCAA........AAGGACGAA
#=GC SS_cons     .<<<<<<.<<<<<.........>>>>>.......<<<<............>>>>...

AJ295018.1/58-1  ACUCUGC
AJ536615.1/1-44  AUGG...
AJ550900.1/56-3  ACUUAUG
J02386.1/42-95   ACGGAUG
#=GC SS_cons     >>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:13
#=GF ID  Hammerhead_3:13

AJ536619.1/206-152  CCACCGUCGGAAAGUG.UGUACUUUCCCUGAUGAGUCCGA..............
AJ550912.1/56-3     CAAAAGUCUGGGCUA......AGCCCACUGAUGAGUUGCUGA............
AJ247113.1/134-53   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCAAAUU
J02386.1/42-95      UGUCCGUA.GUGGAUGUGUA.UCCACUCUGAUGAGUCCAA..............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ536619.1/206-152  ..............AAGGACGAAACGGUAC
AJ550912.1/56-3     ............GAUGCGACGAAACUUUUG
AJ247113.1/134-53   GCUUUACUCCCGCACAAGCCGAAACUGGA.
J02386.1/42-95      ..............AAGGACGAAACGGAUG
#=GC SS_cons        ................>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:14
#=GF ID  Hammerhead_3:14

AJ247113.1/134-53   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCAAAUU
AF170509.1/56-3     CAUAAGUCUAGGCUU......AGCCCACUGAUGAGCCGUUGA............
AJ550911.1/282-335  GAAGAGUCUGUGCUA......AGCACACUGACGAGUCUCUGA............
M17439.1/1-48       ........ACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGU..............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ247113.1/134-53   GCUUUACUCCCGCACAAGCCGAAACUGGA.
AF170509.1/56-3     ............GAUACGGCGAAACUUAUG
AJ550911.1/282-335  ............AAUGAGACGAAACUCUUC
M17439.1/1-48       ..............GAGGACGAAACAGGAC
#=GC SS_cons        ................>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:15
#=GF ID  Hammerhead_3:15

AJ295015.1/58-1     ACAGAGUCUGACAAA.....CCGUCACUGAAGACGUUCAACUUGCGUUGAACAG
AJ536617.1/1-40     ........GGGUGGUGUGUACCACCCCUGAUGAGUCCGA........AAGGACG
AJ005322.1/281-334  GAAGAGUCUGUGCUA.....AGCACACUGACGAGUCUCUGA....AAUGAGACG
J02439.1/42-95      UGUCCGUA.GUGGAUGUGUAUCCACUCUGAUGAGUCCGA........AAGGACG
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<............>>>>.

AJ295015.1/58-1     AAACUCUGC
AJ536617.1/1-40     AA.......
AJ005322.1/281-334  AAACUCUUU
J02439.1/42-95      AAACGGAUG
#=GC SS_cons        ..>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:16
#=GF ID  Hammerhead_3:16

AJ536617.1/1-40     ........GGGUGGUGUGUA.CCACCCCUGAUGAGUCCGA..............
AJ550903.1/281-333  GAAGAGUC.GUGCUU......AGCACACUGAUGAGUCUCUGA............
AJ005322.1/56-3     CAUAAGUCUGGGCUA......AGCCCACUGACGAGCCGUUGA............
AJ247116.1/133-53   .UCCAGUCGAGACCUGAAGUGGGUUUACUGAUGAGGCUGUGGAGAGAGCGAAAG
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ536617.1/1-40     .............AAGGACGAA.......
AJ550903.1/281-333  ...........AAUGAGACGAAACUCUUU
AJ005322.1/56-3     ...........GAUACGGCGAAACUUAUG
AJ247116.1/133-53   CUUUACUCCCACACAAGCCGAAACUGGA.
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:17
#=GF ID  Hammerhead_3:17

AJ247113.1/134-53   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCAAAUU
AJ241839.1/282-334  GAUGAGUC.GUGCUA......AGCACACUGAUGAGUCUCUGA............
AJ005305.1/56-3     CAAAAGUCUGGGCUA......AGCCCACUGACGAGCCGCUGG............
Y12833.1/339-285    CCGCUAUAUGGGGAUGUGUG.UCCCUACUGACGAGUUCAA..............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ247113.1/134-53   GCUUUACUCCCGCACAAGCCGAAACUGGA.
AJ241839.1/282-334  ............AAUGAGACGAAACUCAUA
AJ005305.1/56-3     ............GAUACGGCGAAACUUUUG
Y12833.1/339-285    ..............AAGAACGAAAUAGUUA
#=GC SS_cons        ................>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:18
#=GF ID  Hammerhead_3:18

AJ295015.1/58-1     ACAGAGUCUGACAAA.....CCGUCACUGAAGACGUUCAACUUGCGUUGAACAG
AJ536620.1/1-40     ........GGGUGGUGUGUGCCACCCCUGAUGAGUCCGA........AAGGACG
AF170503.1/280-333  GAAAGGUCUGUGCUU.....AGCACACUGACGAGUUCCUGA....AAUGGAACG
AF339739.1/56-3     CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGGCGUUGA....GAUACGGCG
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<............>>>>.

AJ295015.1/58-1     AAACUCUGC
AJ536620.1/1-40     AA.......
AF170503.1/280-333  AAACCUUUU
AF339739.1/56-3     AAACUUAUG
#=GC SS_cons        ..>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:19
#=GF ID  Hammerhead_3:19

AJ536617.1/1-40     ........GGGUGGUGUGUA.CCACCCCUGAUGAGUCCGA..............
AJ005321.1/281-333  GAAGAGUC.GUGCUA......AGCACACUGAUGAGUCUCUGA............
AF170509.1/56-3     CAUAAGUCUAGGCUU......AGCCCACUGAUGAGCCGUUGA............
AJ247121.1/133-53   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCG
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ536617.1/1-40     .............AAGGACGAA.......
AJ005321.1/281-333  ...........AAUGAGACGAAACUCUUG
AF170509.1/56-3     ...........GAUACGGCGAAACUUAUG
AJ247121.1/133-53   CUUUACUCCCGCACAAGCCGAAACUGGA.
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:20
#=GF ID  Hammerhead_3:20

AJ536620.1/1-40   ........GGGUGGUGUGUG.CCACCCCUGAUGAGUCCGA................
Y14700.1/133-53   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGAUGAGGCUGUGGAGAGAGCGAAAGCU
AJ550900.1/56-3   CAUAAGUCUGGGCUA......AGCCCACUGAUGAGCCUUUGC..............
M83545.1/282-335  GAAGAGUCUGUGCUA......AGCACACUGACGAGUCUCUGA..............
#=GC SS_cons      .<<<<<<.<<<<<.........>>>>>.......<<<<..................

AJ536620.1/1-40   ...........AAGGACGAA.......
Y14700.1/133-53   UUACUCCCACACAAGCCGAAACUGGA.
AJ550900.1/56-3   .........GACAAGGCGAAACUUAUG
M83545.1/282-335  .........GAUGAGACGAAACUCUUC
#=GC SS_cons      .............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:21
#=GF ID  Hammerhead_3:21

AJ536617.1/1-40     ........GGGUGGUGUGUA.CCACCCCUGAUGAGUCCGA..............
AJ005303.1/56-3     CAAAAGUCUGGGCUA......AGCCCACUGAUGAGCCGUUGA............
AJ550911.1/282-335  GAAGAGUCUGUGCUA......AGCACACUGACGAGUCUCUGA............
AJ247123.1/132-52   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGAUGAGGCUGUGGAGAGAGCGAAAG
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ536617.1/1-40     .............AAGGACGAA.......
AJ005303.1/56-3     ...........GAUACGGCGAAACUUUUG
AJ550911.1/282-335  ...........AAUGAGACGAAACUCUUC
AJ247123.1/132-52   CUUUACUCCCGCACAAGCCGAAACUGGA.
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:22
#=GF ID  Hammerhead_3:22

AJ536620.1/1-40     ........GGGUGGUGUGUG.CCACCCCUGAUGAGUCCGA..............
AJ247113.1/134-53   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCAAAUU
AJ005319.1/56-3     CAUAAGUCUGGGCUA......AGCCCACUGAUGAGCCGUUGA............
AJ005312.1/282-335  GAUGAGUCUGUGCUA......AGCACACUGAUGAGUCUAUGA............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ536620.1/1-40     ..............AAGGACGAA.......
AJ247113.1/134-53   GCUUUACUCCCGCACAAGCCGAAACUGGA.
AJ005319.1/56-3     ............GAUACGGCGAAACUUAUG
AJ005312.1/282-335  ............AAUGAGACGAAACUCAUA
#=GC SS_cons        ................>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:23
#=GF ID  Hammerhead_3:23

AJ536615.1/1-44     ........GGGUGGUG.UGUACCAUCCCUGAUGAGUCCAA..............
AJ241845.1/282-335  GAUGAGUCUGUGCUA......AGCACACUGAUGAGUCUCUGA............
AJ247122.1/132-52   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUAUUG
AF170499.1/56-3     CAAAAGUCUGGGCUA......AGCCCACUGAUGAGCCGCUGA............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ536615.1/1-44     .............AAGGACGAAAUGG...
AJ241845.1/282-335  ...........AAUGAGACGAAACUCAUG
AJ247122.1/132-52   CUUUACUCCCGCACAAGCCGAAACUGGA.
AF170499.1/56-3     ...........AAUGCGGCGAAACUUUUG
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:24
#=GF ID  Hammerhead_3:24

AJ536620.1/1-40     ........GGGUGGUGUGUG.CCACCCCUGAUGAGUCCGA..............
AJ005310.1/56-3     CAUAAGUCUGGGCUA......AGCCCACUGAUGAGCCGCUGA............
AJ247121.1/133-53   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCG
AJ241831.1/281-334  GAAGAGUCUGUGCUA......AGCACACUGAUGAGUCUCUGA............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ536620.1/1-40     .............AAGGACGAA.......
AJ005310.1/56-3     ...........AAUGCGGCGAAACUUUUG
AJ247121.1/133-53   CUUUACUCCCGCACAAGCCGAAACUGGA.
AJ241831.1/281-334  ...........AAUGAGACGAAACUCUUA
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:25
#=GF ID  Hammerhead_3:25

AJ550911.1/56-3    CAAAAGUCUGGGCUA......AGCCCACUGAUGAGUUGCUGA.............
AJ247113.1/134-53  .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCAAAUUG
AJ550906.1/56-3    CAUAAGUCUGGGCUU......AGCCCACUGAUGAGUCGCUGC.............
D00685.1/1-46      ........GCCAGACGU.GGACCCGGCCUGAUGAGUCCGAAA.............
#=GC SS_cons       .<<<<<<.<<<<<.........>>>>>.......<<<<.................

AJ550911.1/56-3    ...........AACGCAACGAAACUUUUG
AJ247113.1/134-53  CUUUACUCCCGCACAAGCCGAAACUGGA.
AJ550906.1/56-3    ...........GAUGCGACGAAACUUAUG
D00685.1/1-46      ...............GGACGAAACAGUA.
#=GC SS_cons       ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:26
#=GF ID  Hammerhead_3:26

AJ536620.1/1-40     ........GGGUGGUGUGUG.CCACCCCUGAUGAGUCCGA..............
AJ247122.1/132-52   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUAUUG
AJ550898.1/282-335  GAAGAGUCUGCGCUA......AGCGCACUGAUGAGUCUUUGA............
AJ005299.1/282-335  UAAGAGUCUGUGCUA......AGCACACUGAUGAAUCUCUGA............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ536620.1/1-40     .............AAGGACGAA.......
AJ247122.1/132-52   CUUUACUCCCGCACAAGCCGAAACUGGA.
AJ550898.1/282-335  ...........AAUAAGACGAAACUCUUC
AJ005299.1/282-335  ...........AAUGAGACGAAACUCUUG
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:27
#=GF ID  Hammerhead_3:27

AJ295018.1/58-1     ACAGGGUCUGACAAA......CCGUCACUGAAGACGUUCAACUUGCGUUGAACA
AJ536619.1/206-152  CCACCGUCGGAAAGUG.UGUACUUUCCCUGAUGAGUCCGA........AAGGAC
AJ550906.1/56-3     CAUAAGUCUGGGCUU......AGCCCACUGAUGAGUCGCUGC....GAUGCGAC
Y12833.1/339-285    CCGCUAUAUGGGGAUGUGUG.UCCCUACUGACGAGUUCAA........AAGAAC
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<............>>>>

AJ295018.1/58-1     GAAACUCUGC
AJ536619.1/206-152  GAAACGGUAC
AJ550906.1/56-3     GAAACUUAUG
Y12833.1/339-285    GAAAUAGUUA
#=GC SS_cons        ...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:28
#=GF ID  Hammerhead_3:28

AJ536612.1/206-152  UCACCGUCGGAAAGUG.UGCGCUUUCCCUGAUGAGCCCGA....AAGGGCGAAA
AF339740.1/56-3     CAUAAGUCUGGGCUU......AGCCCACUGAUGAGCCGUUGAGAUACGGCGGAA
Y12833.1/339-285    CCGCUAUAUGGGGAUGUGUG.UCCCUACUGACGAGUUCAA....AAGAACGAAA
M17439.1/1-48       ........ACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGU....GAGGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AJ536612.1/206-152  CGGUAC
AF339740.1/56-3     CUUAUG
Y12833.1/339-285    UAGUUA
M17439.1/1-48       CAGGAC
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:29
#=GF ID  Hammerhead_3:29

AJ536614.1/206-152  UCACCGUCGGAAAGUG.UGCGCUUUCCCUGAUGAGCCCAA....AAGGGCGAAA
AJ550898.1/282-335  GAAGAGUCUGCGCUA......AGCGCACUGAUGAGUCUUUGAAAUAAGACGAAA
M33001.1/56-111     ACGCUGUCUGUACUUAUAUC.AGUACACUGACGAGUCCCU...AAAGGACGAAA
D00685.1/1-46       ........GCCAGACGU.GGACCCGGCCUGAUGAGUCCGAAA....GGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AJ536614.1/206-152  CGGUAC
AJ550898.1/282-335  CUCUUC
M33001.1/56-111     CAGCGC
D00685.1/1-46       CAGUA.
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:30
#=GF ID  Hammerhead_3:30

AJ295018.1/58-1     ACAGGGUCUGACAAA......CCGUCACUGAAGACGUUCAACUUGCGUUGAACA
AJ536620.1/206-152  CCACCGUCGGAAAGUG.UGCGCUUUCCCUGAUGAGCCCAA........AAGGGC
AJ241843.1/56-3     CAUAAGUCUGGGCUU......AGCCCACUGAUGAGCCACUGA....AAUGCGGC
J02439.1/42-95      UGUCCGUA.GUGGAUGUGUA.UCCACUCUGAUGAGUCCGA........AAGGAC
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<............>>>>

AJ295018.1/58-1     GAAACUCUGC
AJ536620.1/206-152  GAAACGGUAC
AJ241843.1/56-3     GAAACUUUUG
J02439.1/42-95      GAAACGGAUG
#=GC SS_cons        ...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:31
#=GF ID  Hammerhead_3:31

AJ536615.1/1-44  ........GGGUGGUG.UGUACCAUCCCUGAUGAGUCCAA....AAGGACGAAAUGG
AF339740.1/56-3  CAUAAGUCUGGGCUU......AGCCCACUGAUGAGCCGUUGAGAUACGGCGGAACUU
J02386.1/42-95   UGUCCGUA.GUGGAUGUGUA.UCCACUCUGAUGAGUCCAA....AAGGACGAAACGG
M33001.1/56-111  ACGCUGUCUGUACUUAUAUC.AGUACACUGACGAGUCCCU...AAAGGACGAAACAG
#=GC SS_cons     .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>>>>

AJ536615.1/1-44  ...
AF339740.1/56-3  AUG
J02386.1/42-95   AUG
M33001.1/56-111  CGC
#=GC SS_cons     >>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:32
#=GF ID  Hammerhead_3:32

AF170504.1/284-337  GAUAAGUCUGUGCUA......AGCACACUGAUGAGUCUCUGAAAUGAGACGAAA
J02386.1/42-95      UGUCCGUA.GUGGAUGUGUA.UCCACUCUGAUGAGUCCAA....AAGGACGAAA
M33000.1/55-110     ACGCUGUCUGUACUUGUAUC.AGUACACUGACGAGUCCCU...AAAGGACGAAA
D00685.1/1-46       ........GCCAGACGU.GGACCCGGCCUGAUGAGUCCGAAA....GGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AF170504.1/284-337  CUUAUC
J02386.1/42-95      CGGAUG
M33000.1/55-110     CAGCGC
D00685.1/1-46       CAGUA.
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:33
#=GF ID  Hammerhead_3:33

AJ536620.1/1-40  ........GGGUGGUGUGUG.CCACCCCUGAUGAGUCCGA....AAGGACGAA....
AJ241840.1/56-3  CAGAAGUCUGGGCUA......AGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUU
M33000.1/55-110  ACGCUGUCUGUACUUGUAUC.AGUACACUGACGAGUCCCU...AAAGGACGAAACAG
M17439.1/1-48    ........ACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGU....GAGGACGAAACAG
#=GC SS_cons     .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>>>>

AJ536620.1/1-40  ...
AJ241840.1/56-3  UUG
M33000.1/55-110  CGC
M17439.1/1-48    GAC
#=GC SS_cons     >>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:34
#=GF ID  Hammerhead_3:34

AJ536619.1/206-152  CCACCGUCGGAAAGUG.UGUACUUUCCCUGAUGAGUCCGA..............
AF170499.1/56-3     CAAAAGUCUGGGCUA......AGCCCACUGAUGAGCCGCUGA............
AJ247123.1/132-52   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGAUGAGGCUGUGGAGAGAGCGAAAG
J02386.1/42-95      UGUCCGUA.GUGGAUGUGUA.UCCACUCUGAUGAGUCCAA..............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ536619.1/206-152  .............AAGGACGAAACGGUAC
AF170499.1/56-3     ...........AAUGCGGCGAAACUUUUG
AJ247123.1/132-52   CUUUACUCCCGCACAAGCCGAAACUGGA.
J02386.1/42-95      .............AAGGACGAAACGGAUG
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:35
#=GF ID  Hammerhead_3:35

AJ536612.1/206-152  UCACCGUCGGAAAGUG.UGCGCUUUCCCUGAUGAGCCCGA..............
AJ247121.1/133-53   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCG
AJ241831.1/281-334  GAAGAGUCUGUGCUA......AGCACACUGAUGAGUCUCUGA............
J02439.1/42-95      UGUCCGUA.GUGGAUGUGUA.UCCACUCUGAUGAGUCCGA..............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ536612.1/206-152  .............AAGGGCGAAACGGUAC
AJ247121.1/133-53   CUUUACUCCCGCACAAGCCGAAACUGGA.
AJ241831.1/281-334  ...........AAUGAGACGAAACUCUUA
J02439.1/42-95      .............AAGGACGAAACGGAUG
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:36
#=GF ID  Hammerhead_3:36

AJ536612.1/206-152  UCACCGUCGGAAAGUG.UGCGCUUUCCCUGAUGAGCCCGA..............
Y14700.1/133-53     .UCCAGUCGAGACCUGAAGUGGGUUUCCUGAUGAGGCUGUGGAGAGAGCGAAAG
AJ005314.1/281-334  AAAGAGUCUGUGCUA......AGCACACUGACGAGUCUCUGA............
M63666.1/246-192    CCGGUGUCUCAAGGUGCGUA.CCUUGACUGAUGAGUCCGA..............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ536612.1/206-152  .............AAGGGCGAAACGGUAC
Y14700.1/133-53     CUUUACUCCCACACAAGCCGAAACUGGA.
AJ005314.1/281-334  ...........AAUGAGACGAAACUCUUU
M63666.1/246-192    .............AAGGACGAAACACCAG
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:37
#=GF ID  Hammerhead_3:37

AF339740.1/56-3     CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGGAAC
AJ550911.1/282-335  GAAGAGUCUGUGCUA.....AGCACACUGACGAGUCUCUGAAAUGAGACGAAAC
M63666.1/246-192    CCGGUGUCUCAAGGUGCGUACCUUGACUGAUGAGUCCGA....AAGGACGAAAC
J02439.1/42-95      UGUCCGUA.GUGGAUGUGUAUCCACUCUGAUGAGUCCGA....AAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AF339740.1/56-3     UUAUG
AJ550911.1/282-335  UCUUC
M63666.1/246-192    ACCAG
J02439.1/42-95      GGAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:38
#=GF ID  Hammerhead_3:38

AJ536612.1/206-152  UCACCGUCGGAAAGUG.UGCGCUUUCCCUGAUGAGCCCGA....AAGGGCGAAA
AJ536617.1/1-40     ........GGGUGGUGUGUA.CCACCCCUGAUGAGUCCGA....AAGGACGAA.
M83545.1/282-335    GAAGAGUCUGUGCUA......AGCACACUGACGAGUCUCUGAGAUGAGACGAAA
M33001.1/56-111     ACGCUGUCUGUACUUAUAUC.AGUACACUGACGAGUCCCU...AAAGGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AJ536612.1/206-152  CGGUAC
AJ536617.1/1-40     ......
M83545.1/282-335    CUCUUC
M33001.1/56-111     CAGCGC
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:39
#=GF ID  Hammerhead_3:39

AJ536614.1/206-152  UCACCGUCGGAAAGUG.UGCGCUUUCCCUGAUGAGCCCAA....AAGGGCGAAA
AJ241831.1/56-3     CAUAAGUCUGGGCUA......AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAA
AJ550907.1/281-333  AAAGAGUC.GCGCUU......AGCGCACUGAUGAGUCUCUGAGAUGAGACGAAA
J02439.1/42-95      UGUCCGUA.GUGGAUGUGUA.UCCACUCUGAUGAGUCCGA....AAGGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AJ536614.1/206-152  CGGUAC
AJ241831.1/56-3     CUUCUG
AJ550907.1/281-333  CUCUUC
J02439.1/42-95      CGGAUG
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:40
#=GF ID  Hammerhead_3:40

AJ536614.1/206-152  UCACCGUCGGAAAGUG.UGCGCUUUCCCUGAUGAGCCCAA..............
AJ247123.1/132-52   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGAUGAGGCUGUGGAGAGAGCGAAAG
M83545.1/282-335    GAAGAGUCUGUGCUA......AGCACACUGACGAGUCUCUGA............
M33000.1/55-110     ACGCUGUCUGUACUUGUAUC.AGUACACUGACGAGUCCCU..............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ536614.1/206-152  .............AAGGGCGAAACGGUAC
AJ247123.1/132-52   CUUUACUCCCGCACAAGCCGAAACUGGA.
M83545.1/282-335    ...........GAUGAGACGAAACUCUUC
M33000.1/55-110     ............AAAGGACGAAACAGCGC
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:41
#=GF ID  Hammerhead_3:41

AJ295018.1/58-1     ACAGGGUCUGACAAA.....CCGUCACUGAAGACGUUCAACUUGCGUUGAACAG
AJ005322.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGACGAGCCGUUGA....GAUACGGCG
AJ005300.1/282-335  UAAGAGUCUGUGGUA.....AGCACACUGAUGAGUCUCUGA....AAUGAGACG
M33000.1/55-110     ACGCUGUCUGUACUUGUAUCAGUACACUGACGAGUCCCU.......AAAGGACG
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<............>>>>.

AJ295018.1/58-1     AAACUCUGC
AJ005322.1/56-3     AAACUUAUG
AJ005300.1/282-335  AAACUCUUG
M33000.1/55-110     AAACAGCGC
#=GC SS_cons        ..>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:42
#=GF ID  Hammerhead_3:42

AJ295015.1/58-1     ACAGAGUCUGACAAA.....CCGUCACUGAAGACGUUCAACUUGCGUUGAACAG
AJ536614.1/206-152  UCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAA........AAGGGCG
AJ241828.1/56-3     CAUAAGUCUGGGUUA.....AGCCCACUGAUGAGCCGUUGA....GAUACGGCG
AJ005321.1/281-333  GAAGAGUC.GUGCUA.....AGCACACUGAUGAGUCUCUGA....AAUGAGACG
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<............>>>>.

AJ295015.1/58-1     AAACUCUGC
AJ536614.1/206-152  AAACGGUAC
AJ241828.1/56-3     AAACUUAUG
AJ005321.1/281-333  AAACUCUUG
#=GC SS_cons        ..>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:43
#=GF ID  Hammerhead_3:43

AJ295015.1/58-1     ACAGAGUCUGACAAA......CCGUCACUGAAGACGUUCAACUU..........
AJ247122.1/132-52   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUAUUG
AJ550911.1/282-335  GAAGAGUCUGUGCUA......AGCACACUGACGAGUCUCUGA............
M33000.1/55-110     ACGCUGUCUGUACUUGUAUC.AGUACACUGACGAGUCCCU..............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ295015.1/58-1     ..........GCGUUGAACAGAAACUCUGC
AJ247122.1/132-52   CUUUACUCCCG.CACAAGCCGAAACUGGA.
AJ550911.1/282-335  ............AAUGAGACGAAACUCUUC
M33000.1/55-110     .............AAAGGACGAAACAGCGC
#=GC SS_cons        ................>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:44
#=GF ID  Hammerhead_3:44

AJ295015.1/58-1     ACAGAGUCUGACAAA.....CCGUCACUGAAGACGUUCAACUUGCGUUGAACAG
AJ536619.1/206-152  CCACCGUCGGAAAGUGUGUACUUUCCCUGAUGAGUCCGA........AAGGACG
AJ550907.1/56-3     CAUAAGUCUGGGCUU.....AGCCUACUGAUGAGUCGCUGC....GAUGCGACG
AJ550909.1/282-333  GAAGAGUC.GCGCUU.....AGCGCACUGAUGAGUCUCUGA.....AUGAGACG
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<............>>>>.

AJ295015.1/58-1     AAACUCUGC
AJ536619.1/206-152  AAACGGUAC
AJ550907.1/56-3     AAACUUAUG
AJ550909.1/282-333  AAACUCUUC
#=GC SS_cons        ..>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:45
#=GF ID  Hammerhead_3:45

AJ536619.1/206-152  CCACCGUCGGAAAGUG.UGUACUUUCCCUGAUGAGUCCGA..............
AJ247113.1/134-53   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCAAAUU
AF170503.1/55-3     CAUAAGUCUGGGCUU......AG.CCACUGACGAGUCGCUGG............
AJ005321.1/281-333  GAAGAGUC.GUGCUA......AGCACACUGAUGAGUCUCUGA............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ536619.1/206-152  ..............AAGGACGAAACGGUAC
AJ247113.1/134-53   GCUUUACUCCCGCACAAGCCGAAACUGGA.
AF170503.1/55-3     ............GAUACGGCGAAACUUAUG
AJ005321.1/281-333  ............AAUGAGACGAAACUCUUG
#=GC SS_cons        ................>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:46
#=GF ID  Hammerhead_3:46

AJ247121.1/133-53   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCG
AJ005322.1/281-334  GAAGAGUCUGUGCUA......AGCACACUGACGAGUCUCUGA............
Y12833.1/339-285    CCGCUAUAUGGGGAUGUGUG.UCCCUACUGACGAGUUCAA..............
M33001.1/56-111     ACGCUGUCUGUACUUAUAUC.AGUACACUGACGAGUCCCU..............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ247121.1/133-53   CUUUACUCCCGCACAAGCCGAAACUGGA.
AJ005322.1/281-334  ...........AAUGAGACGAAACUCUUU
Y12833.1/339-285    .............AAGAACGAAAUAGUUA
M33001.1/56-111     ............AAAGGACGAAACAGCGC
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:47
#=GF ID  Hammerhead_3:47

AJ536619.1/206-152  CCACCGUCGGAAAGUG.UGUACUUUCCCUGAUGAGUCCGA..............
Y14700.1/133-53     .UCCAGUCGAGACCUGAAGUGGGUUUCCUGAUGAGGCUGUGGAGAGAGCGAAAG
AF339739.1/56-3     CAUAAGUCUGGGCUU......AGCCCACUGAUGAGGCGUUGA............
AJ005294.1/282-334  UAAGAGUC.GUGCUA......AGCACACUGAUGAGUCUCUGA............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ536619.1/206-152  .............AAGGACGAAACGGUAC
Y14700.1/133-53     CUUUACUCCCACACAAGCCGAAACUGGA.
AF339739.1/56-3     ...........GAUACGGCGAAACUUAUG
AJ005294.1/282-334  ...........AAUGAGACGAAACUCUUG
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:48
#=GF ID  Hammerhead_3:48

AJ536620.1/1-40     ........GGGUGGUGUGUG.CCACCCCUGAUGAGUCCGA....AAGGACGAA.
AJ536619.1/206-152  CCACCGUCGGAAAGUG.UGUACUUUCCCUGAUGAGUCCGA....AAGGACGAAA
AJ241847.1/281-334  GAAGAGUCUGUGCUA......AGCACACUGAUGAGUUUCUGAAAUGAGACGAAA
M63666.1/246-192    CCGGUGUCUCAAGGUGCGUA.CCUUGACUGAUGAGUCCGA....AAGGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AJ536620.1/1-40     ......
AJ536619.1/206-152  CGGUAC
AJ241847.1/281-334  CUCUUG
M63666.1/246-192    CACCAG
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:49
#=GF ID  Hammerhead_3:49

AJ550908.1/281-334  GAAGAGUCUGCGCUU......AGCGCACUCAUGAGUCUCUGA............
AJ247116.1/133-53   .UCCAGUCGAGACCUGAAGUGGGUUUACUGAUGAGGCUGUGGAGAGAGCGAAAG
AJ550900.1/56-3     CAUAAGUCUGGGCUA......AGCCCACUGAUGAGCCUUUGC............
M63666.1/246-192    CCGGUGUCUCAAGGUGCGUA.CCUUGACUGAUGAGUCCGA..............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ550908.1/281-334  ...........GAUGAGACGAAACUCUUC
AJ247116.1/133-53   CUUUACUCCCACACAAGCCGAAACUGGA.
AJ550900.1/56-3     ...........GACAAGGCGAAACUUAUG
M63666.1/246-192    .............AAGGACGAAACACCAG
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:50
#=GF ID  Hammerhead_3:50

AJ005320.1/281-333  GAAGAGUC.GUGCUA......AGCACACUGAUGAGUCUCUGA............
AF339739.1/56-3     CAUAAGUCUGGGCUU......AGCCCACUGAUGAGGCGUUGA............
AJ247121.1/133-53   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCG
M33000.1/55-110     ACGCUGUCUGUACUUGUAUC.AGUACACUGACGAGUCCCU..............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ005320.1/281-333  ...........AAUGAGACGAAACUCUUU
AF339739.1/56-3     ...........GAUACGGCGAAACUUAUG
AJ247121.1/133-53   CUUUACUCCCGCACAAGCCGAAACUGGA.
M33000.1/55-110     ............AAAGGACGAAACAGCGC
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:51
#=GF ID  Hammerhead_3:51

AJ536615.1/1-44     ........GGGUGGUG.UGUACCAUCCCUGAUGAGUCCAA....AAGGACGAAA
AJ005298.1/56-3     CAUAAGUCUGGGCUA......AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAA
AF170516.1/283-335  GAAGAGUC.GUGCUU......AGCACACUGAUGAGUCUCUGAAAUGAGACGAAA
M63666.1/246-192    CCGGUGUCUCAAGGUGCGUA.CCUUGACUGAUGAGUCCGA....AAGGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AJ536615.1/1-44     UGG...
AJ005298.1/56-3     CUUUUG
AF170516.1/283-335  CUCUUC
M63666.1/246-192    CACCAG
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:52
#=GF ID  Hammerhead_3:52

AJ536615.1/1-44     ........GGGUGGUG.UGUACCAUCCCUGAUGAGUCCAA....AAGGACGAAA
AJ550908.1/281-334  GAAGAGUCUGCGCUU......AGCGCACUCAUGAGUCUCUGAGAUGAGACGAAA
AJ005318.1/56-3     CAUAAGUCUGGGCUA......AGCCCACUGAUGAGCCGUUGAGAUACGGUGAAA
J02439.1/42-95      UGUCCGUA.GUGGAUGUGUA.UCCACUCUGAUGAGUCCGA....AAGGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AJ536615.1/1-44     UGG...
AJ550908.1/281-334  CUCUUC
AJ005318.1/56-3     CUUAUG
J02439.1/42-95      CGGAUG
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:53
#=GF ID  Hammerhead_3:53

AJ241828.1/56-3     CAUAAGUCUGGGUUA......AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAA
AJ005294.1/282-334  UAAGAGUC.GUGCUA......AGCACACUGAUGAGUCUCUGAAAUGAGACGAAA
J02386.1/42-95      UGUCCGUA.GUGGAUGUGUA.UCCACUCUGAUGAGUCCAA....AAGGACGAAA
M17439.1/1-48       ........ACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGU....GAGGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AJ241828.1/56-3     CUUAUG
AJ005294.1/282-334  CUCUUG
J02386.1/42-95      CGGAUG
M17439.1/1-48       CAGGAC
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:54
#=GF ID  Hammerhead_3:54

AJ536620.1/206-152  CCACCGUCGGAAAGUG.UGCGCUUUCCCUGAUGAGCCCAA....AAGGGCGAAA
AF170523.1/55-3     CAAAAGUCUGGGCUU......AG.CCACUGAUGAGCCGUUGAGAUACGGCGAAA
AJ005314.1/281-334  AAAGAGUCUGUGCUA......AGCACACUGACGAGUCUCUGAAAUGAGACGAAA
D00685.1/1-46       ........GCCAGACGU.GGACCCGGCCUGAUGAGUCCGAAA....GGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AJ536620.1/206-152  CGGUAC
AF170523.1/55-3     CUUUUG
AJ005314.1/281-334  CUCUUU
D00685.1/1-46       CAGUA.
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:55
#=GF ID  Hammerhead_3:55

AJ536617.1/1-40     ........GGGUGGUGUGUA.CCACCCCUGAUGAGUCCGA....AAGGACGAA.
AF170509.1/56-3     CAUAAGUCUAGGCUU......AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAA
AJ241850.1/282-334  UAAGAGUC.GUGCUA......AGCACACUGAUGAGUCUCUGAAAAGAGACGAAA
D00685.1/1-46       ........GCCAGACGU.GGACCCGGCCUGAUGAGUCCGAAA....GGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AJ536617.1/1-40     ......
AF170509.1/56-3     CUUAUG
AJ241850.1/282-334  CUCUUU
D00685.1/1-46       CAGUA.
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:56
#=GF ID  Hammerhead_3:56

AJ247113.1/134-53   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCAAAUU
AJ550903.1/281-333  GAAGAGUC.GUGCUU......AGCACACUGAUGAGUCUCUGA............
AJ550899.1/56-3     CAUAAGUCUGGGCUA......AGCCCACUGAUGAGCCUUUGC............
M33000.1/55-110     ACGCUGUCUGUACUUGUAUC.AGUACACUGACGAGUCCCU..............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ247113.1/134-53   GCUUUACUCCCGCACAAGCCGAAACUGGA.
AJ550903.1/281-333  ............AAUGAGACGAAACUCUUU
AJ550899.1/56-3     ............GAUAAGGCGAAACUUAUG
M33000.1/55-110     .............AAAGGACGAAACAGCGC
#=GC SS_cons        ................>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:57
#=GF ID  Hammerhead_3:57

AJ536617.1/1-40     .........GGGUGGUGUGUACCACCCCUGAUGAGUCCGA....AAGGACGAA.
AJ005319.1/56-3     CAUAAGUC.UGGGCUA.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAA
AJ550910.1/282-336  GAAGAGUCCUGCGCUU.....AGCGCACUGACGAGUCUCUGAGAUGAGACGAAA
M33000.1/55-110     ACGCUGUC.UGUACUUGUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAA
#=GC SS_cons        .<<<<<<..<<<<<........>>>>>.......<<<<........>>>>...>

AJ536617.1/1-40     ......
AJ005319.1/56-3     CUUAUG
AJ550910.1/282-336  CUCUUC
M33000.1/55-110     CAGCGC
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:58
#=GF ID  Hammerhead_3:58

AJ536612.1/206-152  UCACCGUCGGAAAGUG.UGCGCUUUCCCUGAUGAGCCCGA....AAGGGCGAAA
AJ550909.1/56-3     CAUAAGUCUGGGCUU......AGCCCACUGAUGAGUUGCUGCGAUGCAACGAAA
AJ005312.1/282-335  GAUGAGUCUGUGCUA......AGCACACUGAUGAGUCUAUGAAAUGAGACGAAA
J02386.1/42-95      UGUCCGUA.GUGGAUGUGUA.UCCACUCUGAUGAGUCCAA....AAGGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AJ536612.1/206-152  CGGUAC
AJ550909.1/56-3     CUUAUG
AJ005312.1/282-335  CUCAUA
J02386.1/42-95      CGGAUG
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:59
#=GF ID  Hammerhead_3:59

AJ247113.1/134-53   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCAAAUU
AJ241833.1/282-334  AAAGAGUC.GUGCUA......AGCACACUGAUGAGUCUCUGA............
AJ005318.1/56-3     CAUAAGUCUGGGCUA......AGCCCACUGAUGAGCCGUUGA............
M33001.1/56-111     ACGCUGUCUGUACUUAUAUC.AGUACACUGACGAGUCCCU..............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ247113.1/134-53   GCUUUACUCCCGCACAAGCCGAAACUGGA.
AJ241833.1/282-334  ............AAUGAGACGAAACUCUUU
AJ005318.1/56-3     ............GAUACGGUGAAACUUAUG
M33001.1/56-111     .............AAAGGACGAAACAGCGC
#=GC SS_cons        ................>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:60
#=GF ID  Hammerhead_3:60

AJ550903.1/281-333  GAAGAGUC.GUGCUU......AGCACACUGAUGAGUCUCUGA............
AF170503.1/55-3     CAUAAGUCUGGGCUU......AG.CCACUGACGAGUCGCUGG............
AJ247123.1/132-52   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGAUGAGGCUGUGGAGAGAGCGAAAG
Y12833.1/339-285    CCGCUAUAUGGGGAUGUGUG.UCCCUACUGACGAGUUCAA..............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ550903.1/281-333  ...........AAUGAGACGAAACUCUUU
AF170503.1/55-3     ...........GAUACGGCGAAACUUAUG
AJ247123.1/132-52   CUUUACUCCCGCACAAGCCGAAACUGGA.
Y12833.1/339-285    .............AAGAACGAAAUAGUUA
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:61
#=GF ID  Hammerhead_3:61

AJ295018.1/58-1     ACAGGGUCUGACAAA.....CCGUCACUGAAGACGUUCAACUUGCGUUGAACAG
AJ536614.1/206-152  UCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAA........AAGGGCG
AJ005312.1/56-3     CAAAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGCUGA....AAUGCGGCU
AF170520.1/282-335  GAUAAGUCUGUGCUU.....AGCACACUGAUGAGUCUCUGA....AAUGAGACG
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<............>>>>.

AJ295018.1/58-1     AAACUCUGC
AJ536614.1/206-152  AAACGGUAC
AJ005312.1/56-3     AAACUUUUG
AF170520.1/282-335  AAACUUAUC
#=GC SS_cons        ..>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:62
#=GF ID  Hammerhead_3:62

AJ550901.1/282-334  GAAGAGUC.GCGCUA......AGCGCACUGAUGAGUCUUUGA............
AJ241840.1/56-3     CAGAAGUCUGGGCUA......AGCCCACUGAUGAGCCGCUGA............
Y14700.1/133-53     .UCCAGUCGAGACCUGAAGUGGGUUUCCUGAUGAGGCUGUGGAGAGAGCGAAAG
M33001.1/56-111     ACGCUGUCUGUACUUAUAUC.AGUACACUGACGAGUCCCU..............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ550901.1/282-334  ...........GAUAAGACGAAACUCUUC
AJ241840.1/56-3     ...........AAUGCGGCGAAACUUUUG
Y14700.1/133-53     CUUUACUCCCACACAAGCCGAAACUGGA.
M33001.1/56-111     ............AAAGGACGAAACAGCGC
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:63
#=GF ID  Hammerhead_3:63

AJ536615.1/1-44     ........GGGUGGUGUGUACCAUCCCUGAUGAGUCCAA....AAGGACGAAAU
AJ536612.1/206-152  UCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCGA....AAGGGCGAAAC
AF170503.1/55-3     CAUAAGUCUGGGCUU.....AG.CCACUGACGAGUCGCUGGGAUACGGCGAAAC
AJ005299.1/282-335  UAAGAGUCUGUGCUA.....AGCACACUGAUGAAUCUCUGAAAUGAGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ536615.1/1-44     GG...
AJ536612.1/206-152  GGUAC
AF170503.1/55-3     UUAUG
AJ005299.1/282-335  UCUUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:64
#=GF ID  Hammerhead_3:64

AJ536620.1/206-152  CCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAA....AAGGGCGAAAC
AJ536615.1/1-44     ........GGGUGGUGUGUACCAUCCCUGAUGAGUCCAA....AAGGACGAAAU
AJ005322.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGACGAGCCGUUGAGAUACGGCGAAAC
AJ550907.1/281-333  AAAGAGUC.GCGCUU.....AGCGCACUGAUGAGUCUCUGAGAUGAGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ536620.1/206-152  GGUAC
AJ536615.1/1-44     GG...
AJ005322.1/56-3     UUAUG
AJ550907.1/281-333  UCUUC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:65
#=GF ID  Hammerhead_3:65

AJ550906.1/56-3     CAUAAGUCUGGGCUU......AGCCCACUGAUGAGUCGCUGC............
Y14700.1/133-53     .UCCAGUCGAGACCUGAAGUGGGUUUCCUGAUGAGGCUGUGGAGAGAGCGAAAG
AJ550898.1/282-335  GAAGAGUCUGCGCUA......AGCGCACUGAUGAGUCUUUGA............
M17439.1/1-48       ........ACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGU..............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ550906.1/56-3     ...........GAUGCGACGAAACUUAUG
Y14700.1/133-53     CUUUACUCCCACACAAGCCGAAACUGGA.
AJ550898.1/282-335  ...........AAUAAGACGAAACUCUUC
M17439.1/1-48       .............GAGGACGAAACAGGAC
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:66
#=GF ID  Hammerhead_3:66

AJ536620.1/206-152  CCACCGUCGGAAAGUG.UGCGCUUUCCCUGAUGAGCCCAA....AAGGGCGAAA
AF170520.1/282-335  GAUAAGUCUGUGCUU......AGCACACUGAUGAGUCUCUGAAAUGAGACGAAA
AJ550900.1/56-3     CAUAAGUCUGGGCUA......AGCCCACUGAUGAGCCUUUGCGACAAGGCGAAA
Y12833.1/339-285    CCGCUAUAUGGGGAUGUGUG.UCCCUACUGACGAGUUCAA....AAGAACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AJ536620.1/206-152  CGGUAC
AF170520.1/282-335  CUUAUC
AJ550900.1/56-3     CUUAUG
Y12833.1/339-285    UAGUUA
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:67
#=GF ID  Hammerhead_3:67

AJ536612.1/206-152  UCACCGUCGGAAAGUG.UGCGCUUUCCCUGAUGAGCCCGA..............
AJ550901.1/282-334  GAAGAGUC.GCGCUA......AGCGCACUGAUGAGUCUUUGA............
AJ241819.1/56-3     CAUAAGUCUGGGCUA......AGCCCACUGAUGAGCCGUUGA............
AJ247123.1/132-52   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGAUGAGGCUGUGGAGAGAGCGAAAG
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ536612.1/206-152  .............AAGGGCGAAACGGUAC
AJ550901.1/282-334  ...........GAUAAGACGAAACUCUUC
AJ241819.1/56-3     ...........AAUACGGCGAAACUUUUG
AJ247123.1/132-52   CUUUACUCCCGCACAAGCCGAAACUGGA.
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:68
#=GF ID  Hammerhead_3:68

AJ536619.1/206-152  CCACCGUCGGAAAGUG.UGUACUUUCCCUGAUGAGUCCGA..............
AJ005312.1/56-3     CAAAAGUCUGGGCUA......AGCCCACUGAUGAGCCGCUGA............
AJ550906.1/282-334  GAAGAGUC.GUGCUU......AGCACACUGAUGAGUCUCUGA............
AJ247121.1/133-53   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCG
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ536619.1/206-152  .............AAGGACGAAACGGUAC
AJ005312.1/56-3     ...........AAUGCGGCUAAACUUUUG
AJ550906.1/282-334  ...........GAUGAGACGAAACUCUUC
AJ247121.1/133-53   CUUUACUCCCGCACAAGCCGAAACUGGA.
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:69
#=GF ID  Hammerhead_3:69

AJ536614.1/206-152  UCACCGUCGGAAAGUG.UGCGCUUUCCCUGAUGAGCCCAA..............
AJ241839.1/282-334  GAUGAGUC.GUGCUA......AGCACACUGAUGAGUCUCUGA............
AJ241819.1/56-3     CAUAAGUCUGGGCUA......AGCCCACUGAUGAGCCGUUGA............
AJ247121.1/133-53   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCG
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ536614.1/206-152  .............AAGGGCGAAACGGUAC
AJ241839.1/282-334  ...........AAUGAGACGAAACUCAUA
AJ241819.1/56-3     ...........AAUACGGCGAAACUUUUG
AJ247121.1/133-53   CUUUACUCCCGCACAAGCCGAAACUGGA.
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:70
#=GF ID  Hammerhead_3:70

AJ536612.1/206-152  UCACCGUCGGAAAGUG.UGCGCUUUCCCUGAUGAGCCCGA..............
AJ005298.1/56-3     CAUAAGUCUGGGCUA......AGCCCACUGAUGAGCCGUUGA............
AJ241845.1/282-335  GAUGAGUCUGUGCUA......AGCACACUGAUGAGUCUCUGA............
AJ247116.1/133-53   .UCCAGUCGAGACCUGAAGUGGGUUUACUGAUGAGGCUGUGGAGAGAGCGAAAG
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ536612.1/206-152  .............AAGGGCGAAACGGUAC
AJ005298.1/56-3     ...........GAUACGGCGAAACUUUUG
AJ241845.1/282-335  ...........AAUGAGACGAAACUCAUG
AJ247116.1/133-53   CUUUACUCCCACACAAGCCGAAACUGGA.
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:71
#=GF ID  Hammerhead_3:71

AJ005320.1/281-333  GAAGAGUC.GUGCUA......AGCACACUGAUGAGUCUCUGA............
AJ005303.1/56-3     CAAAAGUCUGGGCUA......AGCCCACUGAUGAGCCGUUGA............
AJ247123.1/132-52   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGAUGAGGCUGUGGAGAGAGCGAAAG
M33001.1/56-111     ACGCUGUCUGUACUUAUAUC.AGUACACUGACGAGUCCCU..............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ005320.1/281-333  ...........AAUGAGACGAAACUCUUU
AJ005303.1/56-3     ...........GAUACGGCGAAACUUUUG
AJ247123.1/132-52   CUUUACUCCCGCACAAGCCGAAACUGGA.
M33001.1/56-111     ............AAAGGACGAAACAGCGC
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:72
#=GF ID  Hammerhead_3:72

AJ536620.1/1-40     ........GGGUGGUGUGUG.CCACCCCUGAUGAGUCCGA....AAGGACGAA.
AJ241828.1/56-3     CAUAAGUCUGGGUUA......AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAA
AJ241823.1/282-335  AAAGAGUCUGUGCUA......AGCACACUGAUGAGUCUCUAAAAUGAGACGAAA
D00685.1/1-46       ........GCCAGACGU.GGACCCGGCCUGAUGAGUCCGAAA....GGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AJ536620.1/1-40     ......
AJ241828.1/56-3     CUUAUG
AJ241823.1/282-335  CUCUUU
D00685.1/1-46       CAGUA.
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:73
#=GF ID  Hammerhead_3:73

AJ241831.1/56-3     CAUAAGUCUGGGCUA......AGCCCACUGAUGAGCCGUUGA............
AJ247121.1/133-53   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCUUUCG
AJ005312.1/282-335  GAUGAGUCUGUGCUA......AGCACACUGAUGAGUCUAUGA............
M63666.1/246-192    CCGGUGUCUCAAGGUGCGUA.CCUUGACUGAUGAGUCCGA..............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ241831.1/56-3     ...........GAUACGGCGAAACUUCUG
AJ247121.1/133-53   CUUUACUCCCGCACAAGCCGAAACUGGA.
AJ005312.1/282-335  ...........AAUGAGACGAAACUCAUA
M63666.1/246-192    .............AAGGACGAAACACCAG
#=GC SS_cons        ...............>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:74
#=GF ID  Hammerhead_3:74

AF170503.1/55-3     CAUAAGUCUGGGCUU......AG.CCACUGACGAGUCGCUGGGAUACGGCGAAA
AJ241845.1/282-335  GAUGAGUCUGUGCUA......AGCACACUGAUGAGUCUCUGAAAUGAGACGAAA
J02439.1/42-95      UGUCCGUA.GUGGAUGUGUA.UCCACUCUGAUGAGUCCGA....AAGGACGAAA
D00685.1/1-46       ........GCCAGACGU.GGACCCGGCCUGAUGAGUCCGAAA....GGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AF170503.1/55-3     CUUAUG
AJ241845.1/282-335  CUCAUG
J02439.1/42-95      CGGAUG
D00685.1/1-46       CAGUA.
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:75
#=GF ID  Hammerhead_3:75

AJ536612.1/206-152  UCACCGUCGGAAAGUG.UGCGCUUUCCCUGAUGAGCCCGA..............
AJ247113.1/134-53   .UCCAGUCGAGACCUGAAGUGGGUUUCCUGACGAGGCUGUGGAGAGAGCAAAUU
AJ241840.1/56-3     CAGAAGUCUGGGCUA......AGCCCACUGAUGAGCCGCUGA............
AF170516.1/283-335  GAAGAGUC.GUGCUU......AGCACACUGAUGAGUCUCUGA............
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<................

AJ536612.1/206-152  ..............AAGGGCGAAACGGUAC
AJ247113.1/134-53   GCUUUACUCCCGCACAAGCCGAAACUGGA.
AJ241840.1/56-3     ............AAUGCGGCGAAACUUUUG
AF170516.1/283-335  ............AAUGAGACGAAACUCUUC
#=GC SS_cons        ................>>>>...>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:76
#=GF ID  Hammerhead_3:76

AJ536617.1/1-40     ........GGGUGGUGUGUA.CCACCCCUGAUGAGUCCGA....AAGGACGAA.
AJ536619.1/206-152  CCACCGUCGGAAAGUG.UGUACUUUCCCUGAUGAGUCCGA....AAGGACGAAA
AJ550911.1/56-3     CAAAAGUCUGGGCUA......AGCCCACUGAUGAGUUGCUGAAACGCAACGAAA
AJ550908.1/281-334  GAAGAGUCUGCGCUU......AGCGCACUCAUGAGUCUCUGAGAUGAGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AJ536617.1/1-40     ......
AJ536619.1/206-152  CGGUAC
AJ550911.1/56-3     CUUUUG
AJ550908.1/281-334  CUCUUC
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:77
#=GF ID  Hammerhead_3:77

AJ536614.1/206-152  UCACCGUCGGAAAGUG.UGCGCUUUCCCUGAUGAGCCCAA....AAGGGCGAAA
AJ005294.1/282-334  UAAGAGUC.GUGCUA......AGCACACUGAUGAGUCUCUGAAAUGAGACGAAA
M63666.1/246-192    CCGGUGUCUCAAGGUGCGUA.CCUUGACUGAUGAGUCCGA....AAGGACGAAA
J02386.1/42-95      UGUCCGUA.GUGGAUGUGUA.UCCACUCUGAUGAGUCCAA....AAGGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AJ536614.1/206-152  CGGUAC
AJ005294.1/282-334  CUCUUG
M63666.1/246-192    CACCAG
J02386.1/42-95      CGGAUG
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:78
#=GF ID  Hammerhead_3:78

AJ536620.1/206-152  CCACCGUCGGAAAGUG.UGCGCUUUCCCUGAUGAGCCCAA....AAGGGCGAAA
AJ241840.1/56-3     CAGAAGUCUGGGCUA......AGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAA
M63666.1/246-192    CCGGUGUCUCAAGGUGCGUA.CCUUGACUGAUGAGUCCGA....AAGGACGAAA
M33001.1/56-111     ACGCUGUCUGUACUUAUAUC.AGUACACUGACGAGUCCCU...AAAGGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AJ536620.1/206-152  CGGUAC
AJ241840.1/56-3     CUUUUG
M63666.1/246-192    CACCAG
M33001.1/56-111     CAGCGC
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:79
#=GF ID  Hammerhead_3:79

AJ550909.1/56-3     CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGUUGCUGCGAUGCAACGAAAC
AJ550898.1/282-335  GAAGAGUCUGCGCUA.....AGCGCACUGAUGAGUCUUUGAAAUAAGACGAAAC
Y12833.1/339-285    CCGCUAUAUGGGGAUGUGUGUCCCUACUGACGAGUUCAA....AAGAACGAAAU
M33001.1/56-111     ACGCUGUCUGUACUUAUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ550909.1/56-3     UUAUG
AJ550898.1/282-335  UCUUC
Y12833.1/339-285    AGUUA
M33001.1/56-111     AGCGC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:80
#=GF ID  Hammerhead_3:80

AF170503.1/280-333  GAAAGGUCUGUGCUU.....AGCACACUGACGAGUUCCUGAAAUGGAACGAAAC
AJ005302.1/281-334  AAAGAGUCUGUGCUA.....AGCACACUGAUGAGUCUCUGAAUUGAGACGAAAC
J02439.1/42-95      UGUCCGUA.GUGGAUGUGUAUCCACUCUGAUGAGUCCGA....AAGGACGAAAC
M33000.1/55-110     ACGCUGUCUGUACUUGUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AF170503.1/280-333  CUUUU
AJ005302.1/281-334  UCUUG
J02439.1/42-95      GGAUG
M33000.1/55-110     AGCGC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:81
#=GF ID  Hammerhead_3:81

AJ550906.1/56-3   CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGUCGCUGCGAUGCGACGAAACUU
M83545.1/282-335  GAAGAGUCUGUGCUA.....AGCACACUGACGAGUCUCUGAGAUGAGACGAAACUC
J02386.1/42-95    UGUCCGUA.GUGGAUGUGUAUCCACUCUGAUGAGUCCAA....AAGGACGAAACGG
M33001.1/56-111   ACGCUGUCUGUACUUAUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAACAG
#=GC SS_cons      .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>>>

AJ550906.1/56-3   AUG
M83545.1/282-335  UUC
J02386.1/42-95    AUG
M33001.1/56-111   CGC
#=GC SS_cons      >>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:82
#=GF ID  Hammerhead_3:82

AJ005305.1/56-3     CAAAAGUCUGGGCUA.....AGCCCACUGACGAGCCGCUGGGAUACGGCGAAAC
AJ550909.1/282-333  GAAGAGUC.GCGCUU.....AGCGCACUGAUGAGUCUCUGA.AUGAGACGAAAC
Y12833.1/339-285    CCGCUAUAUGGGGAUGUGUGUCCCUACUGACGAGUUCAA....AAGAACGAAAU
M33000.1/55-110     ACGCUGUCUGUACUUGUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ005305.1/56-3     UUUUG
AJ550909.1/282-333  UCUUC
Y12833.1/339-285    AGUUA
M33000.1/55-110     AGCGC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:83
#=GF ID  Hammerhead_3:83

AJ295015.1/58-1     ACAGAGUCUGACAAA.....CCGUCACUGAAGACGUUCAACUUGCGUUGAACAG
AF339739.1/56-3     CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGGCGUUGA....GAUACGGCG
AJ550909.1/282-333  GAAGAGUC.GCGCUU.....AGCGCACUGAUGAGUCUCUGA.....AUGAGACG
M33001.1/56-111     ACGCUGUCUGUACUUAUAUCAGUACACUGACGAGUCCCU.......AAAGGACG
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<............>>>>.

AJ295015.1/58-1     AAACUCUGC
AF339739.1/56-3     AAACUUAUG
AJ550909.1/282-333  AAACUCUUC
M33001.1/56-111     AAACAGCGC
#=GC SS_cons        ..>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:84
#=GF ID  Hammerhead_3:84

AJ536619.1/206-152  CCACCGUCGGAAAGUG.UGUACUUUCCCUGAUGAGUCCGA....AAGGACGAAA
AJ550901.1/282-334  GAAGAGUC.GCGCUA......AGCGCACUGAUGAGUCUUUGAGAUAAGACGAAA
AJ241828.1/56-3     CAUAAGUCUGGGUUA......AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAA
M33000.1/55-110     ACGCUGUCUGUACUUGUAUC.AGUACACUGACGAGUCCCU...AAAGGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AJ536619.1/206-152  CGGUAC
AJ550901.1/282-334  CUCUUC
AJ241828.1/56-3     CUUAUG
M33000.1/55-110     CAGCGC
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:85
#=GF ID  Hammerhead_3:85

AJ536612.1/206-152  UCACCGUCGGAAAGUG.UGCGCUUUCCCUGAUGAGCCCGA....AAGGGCGAAA
AJ005303.1/56-3     CAAAAGUCUGGGCUA......AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAA
M83545.1/282-335    GAAGAGUCUGUGCUA......AGCACACUGACGAGUCUCUGAGAUGAGACGAAA
M33000.1/55-110     ACGCUGUCUGUACUUGUAUC.AGUACACUGACGAGUCCCU...AAAGGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AJ536612.1/206-152  CGGUAC
AJ005303.1/56-3     CUUUUG
M83545.1/282-335    CUCUUC
M33000.1/55-110     CAGCGC
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:86
#=GF ID  Hammerhead_3:86

AF170504.1/284-337  GAUAAGUC.UGUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAA
AJ550910.1/282-336  GAAGAGUCCUGCGCUU.....AGCGCACUGACGAGUCUCUGAGAUGAGACGAAA
J02439.1/42-95      UGUCCGUA..GUGGAUGUGUAUCCACUCUGAUGAGUCCGA....AAGGACGAAA
M33001.1/56-111     ACGCUGUC.UGUACUUAUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAA
#=GC SS_cons        .<<<<<<..<<<<<........>>>>>.......<<<<........>>>>...>

AF170504.1/284-337  CUUAUC
AJ550910.1/282-336  CUCUUC
J02439.1/42-95      CGGAUG
M33001.1/56-111     CAGCGC
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:87
#=GF ID  Hammerhead_3:87

AJ536612.1/206-152  UCACCGUCGGAAAGUG.UGCGCUUUCCCUGAUGAGCCCGA....AAGGGCGAAA
AJ241843.1/56-3     CAUAAGUCUGGGCUU......AGCCCACUGAUGAGCCACUGAAAUGCGGCGAAA
AJ005322.1/281-334  GAAGAGUCUGUGCUA......AGCACACUGACGAGUCUCUGAAAUGAGACGAAA
M33001.1/56-111     ACGCUGUCUGUACUUAUAUC.AGUACACUGACGAGUCCCU...AAAGGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AJ536612.1/206-152  CGGUAC
AJ241843.1/56-3     CUUUUG
AJ005322.1/281-334  CUCUUU
M33001.1/56-111     CAGCGC
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:88
#=GF ID  Hammerhead_3:88

AF339740.1/56-3     CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGGAAC
AJ550907.1/281-333  AAAGAGUC.GCGCUU.....AGCGCACUGAUGAGUCUCUGAGAUGAGACGAAAC
Y12833.1/339-285    CCGCUAUAUGGGGAUGUGUGUCCCUACUGACGAGUUCAA....AAGAACGAAAU
J02439.1/42-95      UGUCCGUA.GUGGAUGUGUAUCCACUCUGAUGAGUCCGA....AAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AF339740.1/56-3     UUAUG
AJ550907.1/281-333  UCUUC
Y12833.1/339-285    AGUUA
J02439.1/42-95      GGAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:89
#=GF ID  Hammerhead_3:89

AJ536619.1/206-152  CCACCGUCGGAAAGUG.UGUACUUUCCCUGAUGAGUCCGA....AAGGACGAAA
AJ005310.1/56-3     CAUAAGUCUGGGCUA......AGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAA
AJ241830.1/282-334  AAAGAGUC.GUGCUA......AGCACACUGAUGAGUCUCUGAAAUGAGACGAAA
M33001.1/56-111     ACGCUGUCUGUACUUAUAUC.AGUACACUGACGAGUCCCU...AAAGGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AJ536619.1/206-152  CGGUAC
AJ005310.1/56-3     CUUUUG
AJ241830.1/282-334  CUCUUG
M33001.1/56-111     CAGCGC
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:90
#=GF ID  Hammerhead_3:90

AF170503.1/280-333  GAAAGGUCUGUGCUU.....AGCACACUGACGAGUUCCUGAAAUGGAACGAAAC
AF170523.1/55-3     CAAAAGUCUGGGCUU.....AG.CCACUGAUGAGCCGUUGAGAUACGGCGAAAC
AJ005299.1/282-335  UAAGAGUCUGUGCUA.....AGCACACUGAUGAAUCUCUGAAAUGAGACGAAAC
J02386.1/42-95      UGUCCGUA.GUGGAUGUGUAUCCACUCUGAUGAGUCCAA....AAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AF170503.1/280-333  CUUUU
AF170523.1/55-3     UUUUG
AJ005299.1/282-335  UCUUG
J02386.1/42-95      GGAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:91
#=GF ID  Hammerhead_3:91

AJ295018.1/58-1     ACAGGGUCUGACAAA.....CCGUCACUGAAGACGUUCAACUUGCGUUGAACAG
AJ536619.1/206-152  CCACCGUCGGAAAGUGUGUACUUUCCCUGAUGAGUCCGA........AAGGACG
AJ550912.1/56-3     CAAAAGUCUGGGCUA.....AGCCCACUGAUGAGUUGCUGA....GAUGCGACG
AJ005314.1/281-334  AAAGAGUCUGUGCUA.....AGCACACUGACGAGUCUCUGA....AAUGAGACG
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<............>>>>.

AJ295018.1/58-1     AAACUCUGC
AJ536619.1/206-152  AAACGGUAC
AJ550912.1/56-3     AAACUUUUG
AJ005314.1/281-334  AAACUCUUU
#=GC SS_cons        ..>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:92
#=GF ID  Hammerhead_3:92

AJ241841.1/57-3     CAAAAGUUUGGGCUAA.....AGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAA
AF170520.1/282-335  GAUAAGUCUGUGCUU......AGCACACUGAUGAGUCUCUGAAAUGAGACGAAA
M33000.1/55-110     ACGCUGUCUGUACUUGUAUC.AGUACACUGACGAGUCCCU...AAAGGACGAAA
M17439.1/1-48       ........ACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGU....GAGGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AJ241841.1/57-3     CUUUUG
AF170520.1/282-335  CUUAUC
M33000.1/55-110     CAGCGC
M17439.1/1-48       CAGGAC
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:93
#=GF ID  Hammerhead_3:93

AJ536620.1/206-152  CCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAA....AAGGGCGAAAC
AF170503.1/280-333  GAAAGGUCUGUGCUU.....AGCACACUGACGAGUUCCUGAAAUGGAACGAAAC
AJ005319.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAAC
AJ241850.1/282-334  UAAGAGUC.GUGCUA.....AGCACACUGAUGAGUCUCUGAAAAGAGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ536620.1/206-152  GGUAC
AF170503.1/280-333  CUUUU
AJ005319.1/56-3     UUAUG
AJ241850.1/282-334  UCUUU
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:94
#=GF ID  Hammerhead_3:94

AF170503.1/280-333  GAAAGGUC.UGUGCUU.....AGCACACUGACGAGUUCCUGAAAUGGAACGAAA
AF170503.1/55-3     CAUAAGUC.UGGGCUU.....AG.CCACUGACGAGUCGCUGGGAUACGGCGAAA
AJ550910.1/282-336  GAAGAGUCCUGCGCUU.....AGCGCACUGACGAGUCUCUGAGAUGAGACGAAA
Y12833.1/339-285    CCGCUAUA.UGGGGAUGUGUGUCCCUACUGACGAGUUCAA....AAGAACGAAA
#=GC SS_cons        .<<<<<<..<<<<<........>>>>>.......<<<<........>>>>...>

AF170503.1/280-333  CCUUUU
AF170503.1/55-3     CUUAUG
AJ550910.1/282-336  CUCUUC
Y12833.1/339-285    UAGUUA
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:95
#=GF ID  Hammerhead_3:95

AJ536617.1/1-40     ........GGGUGGUGUGUA.CCACCCCUGAUGAGUCCGAAAGGACGAA.....
AJ536614.1/206-152  UCACCGUCGGAAAGUG.UGCGCUUUCCCUGAUGAGCCCAAAAGGGCGAAACGGU
AJ536619.1/206-152  CCACCGUCGGAAAGUG.UGUACUUUCCCUGAUGAGUCCGAAAGGACGAAACGGU
M17439.1/1-48       ........ACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGUGAGGACGAAACAGG
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<....>>>>...>>>>>

AJ536617.1/1-40     ..
AJ536614.1/206-152  AC
AJ536619.1/206-152  AC
M17439.1/1-48       AC
#=GC SS_cons        >.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:96
#=GF ID  Hammerhead_3:96

AJ005303.1/56-3     CAAAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAAC
AJ550909.1/56-3     CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGUUGCUGCGAUGCAACGAAAC
AJ550909.1/282-333  GAAGAGUC.GCGCUU.....AGCGCACUGAUGAGUCUCUGA.AUGAGACGAAAC
J02386.1/42-95      UGUCCGUA.GUGGAUGUGUAUCCACUCUGAUGAGUCCAA....AAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ005303.1/56-3     UUUUG
AJ550909.1/56-3     UUAUG
AJ550909.1/282-333  UCUUC
J02386.1/42-95      GGAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:97
#=GF ID  Hammerhead_3:97

AJ550908.1/281-334  GAAGAGUCUGCGCUU......AGCGCACUCAUGAGUCUCUGAGAUGAGACGAAA
AJ005312.1/282-335  GAUGAGUCUGUGCUA......AGCACACUGAUGAGUCUAUGAAAUGAGACGAAA
J02386.1/42-95      UGUCCGUA.GUGGAUGUGUA.UCCACUCUGAUGAGUCCAA....AAGGACGAAA
M17439.1/1-48       ........ACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGU....GAGGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AJ550908.1/281-334  CUCUUC
AJ005312.1/282-335  CUCAUA
J02386.1/42-95      CGGAUG
M17439.1/1-48       CAGGAC
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:98
#=GF ID  Hammerhead_3:98

AJ295018.1/58-1     ACAGGGUCUGACAAACCGUCACUGAAGACGUUCAACUUGCGUUGAACAGAAACU
AJ241833.1/282-334  AAAGAGUC.GUGCUAAGCACACUGAUGAGUCUCUGA....AAUGAGACGAAACU
AF339740.1/56-3     CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGA....GAUACGGCGGAACU
AJ550898.1/282-335  GAAGAGUCUGCGCUAAGCGCACUGAUGAGUCUUUGA....AAUAAGACGAAACU
#=GC SS_cons        .<<<<<<.<<<<<...>>>>>.......<<<<............>>>>...>>>

AJ295018.1/58-1     CUGC
AJ241833.1/282-334  CUUU
AF339740.1/56-3     UAUG
AJ550898.1/282-335  CUUC
#=GC SS_cons        >>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:99
#=GF ID  Hammerhead_3:99

AJ295015.1/58-1     ACAGAGUCUGACAAACCGUCACUGAAGACGUUCAACUUGCGUUGAACAGAAACU
AF170503.1/280-333  GAAAGGUCUGUGCUUAGCACACUGACGAGUUCCUGA....AAUGGAACGAAACC
AJ005318.1/56-3     CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGA....GAUACGGUGAAACU
AJ550900.1/56-3     CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGC....GACAAGGCGAAACU
#=GC SS_cons        .<<<<<<.<<<<<...>>>>>.......<<<<............>>>>...>>>

AJ295015.1/58-1     CUGC
AF170503.1/280-333  UUUU
AJ005318.1/56-3     UAUG
AJ550900.1/56-3     UAUG
#=GC SS_cons        >>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:100
#=GF ID  Hammerhead_3:100

AJ536620.1/206-152  CCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAA....AAGGGCGAAAC
AJ550901.1/282-334  GAAGAGUC.GCGCUA.....AGCGCACUGAUGAGUCUUUGAGAUAAGACGAAAC
AJ241847.1/281-334  GAAGAGUCUGUGCUA.....AGCACACUGAUGAGUUUCUGAAAUGAGACGAAAC
AF170519.1/55-3     CAUAAGUCUGGGCUU.....AG.CCACUGAUGAGCCGUUGAGAUACGGCGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ536620.1/206-152  GGUAC
AJ550901.1/282-334  UCUUC
AJ241847.1/281-334  UCUUG
AF170519.1/55-3     UUAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:101
#=GF ID  Hammerhead_3:101

AJ536620.1/206-152  CCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAA....AAGGGCGAAAC
AF170503.1/55-3     CAUAAGUCUGGGCUU.....AG.CCACUGACGAGUCGCUGGGAUACGGCGAAAC
AJ550909.1/282-333  GAAGAGUC.GCGCUU.....AGCGCACUGAUGAGUCUCUGA.AUGAGACGAAAC
AJ005314.1/281-334  AAAGAGUCUGUGCUA.....AGCACACUGACGAGUCUCUGAAAUGAGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ536620.1/206-152  GGUAC
AF170503.1/55-3     UUAUG
AJ550909.1/282-333  UCUUC
AJ005314.1/281-334  UCUUU
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:102
#=GF ID  Hammerhead_3:102

AJ241833.1/282-334  AAAGAGUC.GUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AJ550908.1/281-334  GAAGAGUCUGCGCUU.....AGCGCACUCAUGAGUCUCUGAGAUGAGACGAAAC
AJ550909.1/56-3     CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGUUGCUGCGAUGCAACGAAAC
M63666.1/246-192    CCGGUGUCUCAAGGUGCGUACCUUGACUGAUGAGUCCGA....AAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ241833.1/282-334  UCUUU
AJ550908.1/281-334  UCUUC
AJ550909.1/56-3     UUAUG
M63666.1/246-192    ACCAG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:103
#=GF ID  Hammerhead_3:103

AF170503.1/55-3     CAUAAGUCUGGGCUU.....AG.CCACUGACGAGUCGCUGGGAUACGGCGAAAC
AJ241823.1/282-335  AAAGAGUCUGUGCUA.....AGCACACUGAUGAGUCUCUAAAAUGAGACGAAAC
AF170499.1/56-3     CAAAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAAC
M63666.1/246-192    CCGGUGUCUCAAGGUGCGUACCUUGACUGAUGAGUCCGA....AAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AF170503.1/55-3     UUAUG
AJ241823.1/282-335  UCUUU
AF170499.1/56-3     UUUUG
M63666.1/246-192    ACCAG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:104
#=GF ID  Hammerhead_3:104

AJ295018.1/58-1     ACAGGGUCUGACAAA.....CCGUCACUGAAGACGUUCAACUUGCGUUGAACAG
AJ550906.1/282-334  GAAGAGUC.GUGCUU.....AGCACACUGAUGAGUCUCUGA....GAUGAGACG
AJ550911.1/282-335  GAAGAGUCUGUGCUA.....AGCACACUGACGAGUCUCUGA....AAUGAGACG
M63666.1/246-192    CCGGUGUCUCAAGGUGCGUACCUUGACUGAUGAGUCCGA........AAGGACG
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<............>>>>.

AJ295018.1/58-1     AAACUCUGC
AJ550906.1/282-334  AAACUCUUC
AJ550911.1/282-335  AAACUCUUC
M63666.1/246-192    AAACACCAG
#=GC SS_cons        ..>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:105
#=GF ID  Hammerhead_3:105

AJ295018.1/58-1     ACAGGGUCUGACAAACCGUCACUGAAGACGUUCAACUUGCGUUGAACAGAAACU
AJ005305.1/56-3     CAAAAGUCUGGGCUAAGCCCACUGACGAGCCGCUGG....GAUACGGCGAAACU
AF170509.1/56-3     CAUAAGUCUAGGCUUAGCCCACUGAUGAGCCGUUGA....GAUACGGCGAAACU
AJ005322.1/281-334  GAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGA....AAUGAGACGAAACU
#=GC SS_cons        .<<<<<<.<<<<<...>>>>>.......<<<<............>>>>...>>>

AJ295018.1/58-1     CUGC
AJ005305.1/56-3     UUUG
AF170509.1/56-3     UAUG
AJ005322.1/281-334  CUUU
#=GC SS_cons        >>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:106
#=GF ID  Hammerhead_3:106

AJ536619.1/206-152  CCACCGUCGGAAAGUGUGUACUUUCCCUGAUGAGUCCGA....AAGGACGAAAC
AF170503.1/55-3     CAUAAGUCUGGGCUU.....AG.CCACUGACGAGUCGCUGGGAUACGGCGAAAC
AJ005318.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGUUGAGAUACGGUGAAAC
AJ550898.1/282-335  GAAGAGUCUGCGCUA.....AGCGCACUGAUGAGUCUUUGAAAUAAGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ536619.1/206-152  GGUAC
AF170503.1/55-3     UUAUG
AJ005318.1/56-3     UUAUG
AJ550898.1/282-335  UCUUC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:107
#=GF ID  Hammerhead_3:107

AJ536620.1/206-152  CCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAA....AAGGGCGAAAC
AJ241841.1/57-3     CAAAAGUUUGGGCUAA....AGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAAC
AJ005322.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGACGAGCCGUUGAGAUACGGCGAAAC
AJ241823.1/282-335  AAAGAGUCUGUGCUA.....AGCACACUGAUGAGUCUCUAAAAUGAGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ536620.1/206-152  GGUAC
AJ241841.1/57-3     UUUUG
AJ005322.1/56-3     UUAUG
AJ241823.1/282-335  UCUUU
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:108
#=GF ID  Hammerhead_3:108

AJ536614.1/206-152  UCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAA....AAGGGCGAAAC
AJ005298.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAAC
AJ241847.1/281-334  GAAGAGUCUGUGCUA.....AGCACACUGAUGAGUUUCUGAAAUGAGACGAAAC
AJ550909.1/282-333  GAAGAGUC.GCGCUU.....AGCGCACUGAUGAGUCUCUGA.AUGAGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ536614.1/206-152  GGUAC
AJ005298.1/56-3     UUUUG
AJ241847.1/281-334  UCUUG
AJ550909.1/282-333  UCUUC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:109
#=GF ID  Hammerhead_3:109

AJ536620.1/1-40  ........GGGUGGUGUGUGCCACCCCUGAUGAGUCCGA....AAGGACGAA.....
AF339740.1/56-3  CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGGAACUUA
AF170503.1/55-3  CAUAAGUCUGGGCUU.....AG.CCACUGACGAGUCGCUGGGAUACGGCGAAACUUA
J02386.1/42-95   UGUCCGUA.GUGGAUGUGUAUCCACUCUGAUGAGUCCAA....AAGGACGAAACGGA
#=GC SS_cons     .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>>>>

AJ536620.1/1-40  ..
AF339740.1/56-3  UG
AF170503.1/55-3  UG
J02386.1/42-95   UG
#=GC SS_cons     >.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:110
#=GF ID  Hammerhead_3:110

AJ536619.1/206-152  CCACCGUC.GGAAAGUGUGUACUUUCCCUGAUGAGUCCGA....AAGGACGAAA
AJ550911.1/282-335  GAAGAGUC.UGUGCUA.....AGCACACUGACGAGUCUCUGAAAUGAGACGAAA
AJ550900.1/56-3     CAUAAGUC.UGGGCUA.....AGCCCACUGAUGAGCCUUUGCGACAAGGCGAAA
AJ550910.1/282-336  GAAGAGUCCUGCGCUU.....AGCGCACUGACGAGUCUCUGAGAUGAGACGAAA
#=GC SS_cons        .<<<<<<..<<<<<........>>>>>.......<<<<........>>>>...>

AJ536619.1/206-152  CGGUAC
AJ550911.1/282-335  CUCUUC
AJ550900.1/56-3     CUUAUG
AJ550910.1/282-336  CUCUUC
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:111
#=GF ID  Hammerhead_3:111

AJ536619.1/206-152  CCACCGUCGGAAAGUG.UGUACUUUCCCUGAUGAGUCCGA....AAGGACGAAA
AJ241847.1/281-334  GAAGAGUCUGUGCUA......AGCACACUGAUGAGUUUCUGAAAUGAGACGAAA
AJ005322.1/281-334  GAAGAGUCUGUGCUA......AGCACACUGACGAGUCUCUGAAAUGAGACGAAA
J02439.1/42-95      UGUCCGUA.GUGGAUGUGUA.UCCACUCUGAUGAGUCCGA....AAGGACGAAA
#=GC SS_cons        .<<<<<<.<<<<<.........>>>>>.......<<<<........>>>>...>

AJ536619.1/206-152  CGGUAC
AJ241847.1/281-334  CUCUUG
AJ005322.1/281-334  CUCUUU
J02439.1/42-95      CGGAUG
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:112
#=GF ID  Hammerhead_3:112

AJ005321.1/281-333  GAAGAGUC.GUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AF170509.1/56-3     CAUAAGUCUAGGCUU.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAAC
AJ550899.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCUUUGCGAUAAGGCGAAAC
M63666.1/246-192    CCGGUGUCUCAAGGUGCGUACCUUGACUGAUGAGUCCGA....AAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ005321.1/281-333  UCUUG
AF170509.1/56-3     UUAUG
AJ550899.1/56-3     UUAUG
M63666.1/246-192    ACCAG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:113
#=GF ID  Hammerhead_3:113

AJ536614.1/206-152  UCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAA....AAGGGCGAAAC
AF170509.1/56-3     CAUAAGUCUAGGCUU.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAAC
AF170516.1/283-335  GAAGAGUC.GUGCUU.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AJ550907.1/281-333  AAAGAGUC.GCGCUU.....AGCGCACUGAUGAGUCUCUGAGAUGAGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ536614.1/206-152  GGUAC
AF170509.1/56-3     UUAUG
AF170516.1/283-335  UCUUC
AJ550907.1/281-333  UCUUC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:114
#=GF ID  Hammerhead_3:114

AJ550906.1/56-3     CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGUCGCUGCGAUGCGACGAAAC
AF170509.1/56-3     CAUAAGUCUAGGCUU.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAAC
AJ005314.1/281-334  AAAGAGUCUGUGCUA.....AGCACACUGACGAGUCUCUGAAAUGAGACGAAAC
Y12833.1/339-285    CCGCUAUAUGGGGAUGUGUGUCCCUACUGACGAGUUCAA....AAGAACGAAAU
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ550906.1/56-3     UUAUG
AF170509.1/56-3     UUAUG
AJ005314.1/281-334  UCUUU
Y12833.1/339-285    AGUUA
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:115
#=GF ID  Hammerhead_3:115

AJ536612.1/206-152  UCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCGA....AAGGGCGAAAC
AF170504.1/284-337  GAUAAGUCUGUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AJ241823.1/282-335  AAAGAGUCUGUGCUA.....AGCACACUGAUGAGUCUCUAAAAUGAGACGAAAC
AF170519.1/55-3     CAUAAGUCUGGGCUU.....AG.CCACUGAUGAGCCGUUGAGAUACGGCGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ536612.1/206-152  GGUAC
AF170504.1/284-337  UUAUC
AJ241823.1/282-335  UCUUU
AF170519.1/55-3     UUAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:116
#=GF ID  Hammerhead_3:116

AJ536612.1/206-152  UCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCGA....AAGGGCGAAAC
AJ241833.1/282-334  AAAGAGUC.GUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AF339739.1/56-3     CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGGCGUUGAGAUACGGCGAAAC
AJ550907.1/281-333  AAAGAGUC.GCGCUU.....AGCGCACUGAUGAGUCUCUGAGAUGAGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ536612.1/206-152  GGUAC
AJ241833.1/282-334  UCUUU
AF339739.1/56-3     UUAUG
AJ550907.1/281-333  UCUUC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:117
#=GF ID  Hammerhead_3:117

AJ536612.1/206-152  UCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCGA....AAGGGCGAAAC
AF339740.1/56-3     CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGGAAC
AJ550909.1/56-3     CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGUUGCUGCGAUGCAACGAAAC
AJ005299.1/282-335  UAAGAGUCUGUGCUA.....AGCACACUGAUGAAUCUCUGAAAUGAGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ536612.1/206-152  GGUAC
AF339740.1/56-3     UUAUG
AJ550909.1/56-3     UUAUG
AJ005299.1/282-335  UCUUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:118
#=GF ID  Hammerhead_3:118

AJ536620.1/206-152  CCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAA....AAGGGCGAAAC
AJ241831.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAAC
AF170516.1/283-335  GAAGAGUC.GUGCUU.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AJ005299.1/282-335  UAAGAGUCUGUGCUA.....AGCACACUGAUGAAUCUCUGAAAUGAGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ536620.1/206-152  GGUAC
AJ241831.1/56-3     UUCUG
AF170516.1/283-335  UCUUC
AJ005299.1/282-335  UCUUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:119
#=GF ID  Hammerhead_3:119

AJ295015.1/58-1     ACAGAGUCUGACAAA.....CCGUCACUGAAGACGUUCAACUUGCGUUGAACAG
AJ536614.1/206-152  UCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAA........AAGGGCG
AJ005302.1/281-334  AAAGAGUCUGUGCUA.....AGCACACUGAUGAGUCUCUGA....AUUGAGACG
AJ005314.1/281-334  AAAGAGUCUGUGCUA.....AGCACACUGACGAGUCUCUGA....AAUGAGACG
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<............>>>>.

AJ295015.1/58-1     AAACUCUGC
AJ536614.1/206-152  AAACGGUAC
AJ005302.1/281-334  AAACUCUUG
AJ005314.1/281-334  AAACUCUUU
#=GC SS_cons        ..>>>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:120
#=GF ID  Hammerhead_3:120

AJ536620.1/206-152  CCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAA....AAGGGCGAAAC
AJ241828.1/56-3     CAUAAGUCUGGGUUA.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAAC
AF170509.1/56-3     CAUAAGUCUAGGCUU.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAAC
AJ550911.1/282-335  GAAGAGUCUGUGCUA.....AGCACACUGACGAGUCUCUGAAAUGAGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ536620.1/206-152  GGUAC
AJ241828.1/56-3     UUAUG
AF170509.1/56-3     UUAUG
AJ550911.1/282-335  UCUUC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:121
#=GF ID  Hammerhead_3:121

AJ536612.1/206-152  UCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCGA....AAGGGCGAAAC
AJ005322.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGACGAGCCGUUGAGAUACGGCGAAAC
AJ005294.1/282-334  UAAGAGUC.GUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AJ550900.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCUUUGCGACAAGGCGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ536612.1/206-152  GGUAC
AJ005322.1/56-3     UUAUG
AJ005294.1/282-334  UCUUG
AJ550900.1/56-3     UUAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:122
#=GF ID  Hammerhead_3:122

AJ536614.1/206-152  UCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAA....AAGGGCGAAAC
AJ005303.1/56-3     CAAAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAAC
AJ550906.1/282-334  GAAGAGUC.GUGCUU.....AGCACACUGAUGAGUCUCUGAGAUGAGACGAAAC
AJ241845.1/282-335  GAUGAGUCUGUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ536614.1/206-152  GGUAC
AJ005303.1/56-3     UUUUG
AJ550906.1/282-334  UCUUC
AJ241845.1/282-335  UCAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:123
#=GF ID  Hammerhead_3:123

AJ241841.1/57-3     CAAAAGUUUGGGCUAA....AGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAAC
AF170516.1/283-335  GAAGAGUC.GUGCUU.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AJ005319.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAAC
Y12833.1/339-285    CCGCUAUAUGGGGAUGUGUGUCCCUACUGACGAGUUCAA....AAGAACGAAAU
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ241841.1/57-3     UUUUG
AF170516.1/283-335  UCUUC
AJ005319.1/56-3     UUAUG
Y12833.1/339-285    AGUUA
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:124
#=GF ID  Hammerhead_3:124

AJ536617.1/1-40     ........GGGUGGUGUGUACCACCCCUGAUGAGUCCGA....AAGGACGAA..
AJ241839.1/282-334  GAUGAGUC.GUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AJ550906.1/282-334  GAAGAGUC.GUGCUU.....AGCACACUGAUGAGUCUCUGAGAUGAGACGAAAC
J02439.1/42-95      UGUCCGUA.GUGGAUGUGUAUCCACUCUGAUGAGUCCGA....AAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ536617.1/1-40     .....
AJ241839.1/282-334  UCAUA
AJ550906.1/282-334  UCUUC
J02439.1/42-95      GGAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:125
#=GF ID  Hammerhead_3:125

AJ536614.1/206-152  UCACCGUC.GGAAAGUGUGCGCUUUCCCUGAUGAGCCCAA....AAGGGCGAAA
AJ005320.1/281-333  GAAGAGUC..GUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAA
AJ550907.1/56-3     CAUAAGUC.UGGGCUU.....AGCCUACUGAUGAGUCGCUGCGAUGCGACGAAA
AJ550910.1/282-336  GAAGAGUCCUGCGCUU.....AGCGCACUGACGAGUCUCUGAGAUGAGACGAAA
#=GC SS_cons        .<<<<<<..<<<<<........>>>>>.......<<<<........>>>>...>

AJ536614.1/206-152  CGGUAC
AJ005320.1/281-333  CUCUUU
AJ550907.1/56-3     CUUAUG
AJ550910.1/282-336  CUCUUC
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:126
#=GF ID  Hammerhead_3:126

AJ536614.1/206-152  UCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAA....AAGGGCGAAAC
AF170520.1/282-335  GAUAAGUCUGUGCUU.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AJ550900.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCUUUGCGACAAGGCGAAAC
M83545.1/282-335    GAAGAGUCUGUGCUA.....AGCACACUGACGAGUCUCUGAGAUGAGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ536614.1/206-152  GGUAC
AF170520.1/282-335  UUAUC
AJ550900.1/56-3     UUAUG
M83545.1/282-335    UCUUC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:127
#=GF ID  Hammerhead_3:127

AF170503.1/280-333  GAAAGGUCUGUGCUU.....AGCACACUGACGAGUUCCUGAAAUGGAACGAAAC
AJ005312.1/56-3     CAAAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGCUGAAAUGCGGCUAAAC
AJ005294.1/282-334  UAAGAGUC.GUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
M33000.1/55-110     ACGCUGUCUGUACUUGUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AF170503.1/280-333  CUUUU
AJ005312.1/56-3     UUUUG
AJ005294.1/282-334  UCUUG
M33000.1/55-110     AGCGC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:128
#=GF ID  Hammerhead_3:128

AF170503.1/55-3     CAUAAGUCUGGGCUU.....AG.CCACUGACGAGUCGCUGGGAUACGGCGAAAC
AJ005294.1/282-334  UAAGAGUC.GUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AJ550900.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCUUUGCGACAAGGCGAAAC
M33001.1/56-111     ACGCUGUCUGUACUUAUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AF170503.1/55-3     UUAUG
AJ005294.1/282-334  UCUUG
AJ550900.1/56-3     UUAUG
M33001.1/56-111     AGCGC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:129
#=GF ID  Hammerhead_3:129

AJ550909.1/56-3     CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGUUGCUGCGAUGCAACGAAAC
AJ005299.1/282-335  UAAGAGUCUGUGCUA.....AGCACACUGAUGAAUCUCUGAAAUGAGACGAAAC
AJ550909.1/282-333  GAAGAGUC.GCGCUU.....AGCGCACUGAUGAGUCUCUGA.AUGAGACGAAAC
M33000.1/55-110     ACGCUGUCUGUACUUGUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ550909.1/56-3     UUAUG
AJ005299.1/282-335  UCUUG
AJ550909.1/282-333  UCUUC
M33000.1/55-110     AGCGC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:130
#=GF ID  Hammerhead_3:130

AJ550906.1/56-3     CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGUCGCUGCGAUGCGACGAAAC
AJ550899.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCUUUGCGAUAAGGCGAAAC
AJ005314.1/281-334  AAAGAGUCUGUGCUA.....AGCACACUGACGAGUCUCUGAAAUGAGACGAAAC
M33000.1/55-110     ACGCUGUCUGUACUUGUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ550906.1/56-3     UUAUG
AJ550899.1/56-3     UUAUG
AJ005314.1/281-334  UCUUU
M33000.1/55-110     AGCGC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:131
#=GF ID  Hammerhead_3:131

AJ241841.1/57-3     CAAAAGUUUGGGCUAA....AGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAAC
AJ005320.1/281-333  GAAGAGUC.GUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AJ550907.1/56-3     CAUAAGUCUGGGCUU.....AGCCUACUGAUGAGUCGCUGCGAUGCGACGAAAC
M33000.1/55-110     ACGCUGUCUGUACUUGUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ241841.1/57-3     UUUUG
AJ005320.1/281-333  UCUUU
AJ550907.1/56-3     UUAUG
M33000.1/55-110     AGCGC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:132
#=GF ID  Hammerhead_3:132

AJ550911.1/56-3     CAAAAGUC.UGGGCUA.....AGCCCACUGAUGAGUUGCUGAAACGCAACGAAA
AJ005300.1/282-335  UAAGAGUC.UGUGGUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAA
AJ550910.1/282-336  GAAGAGUCCUGCGCUU.....AGCGCACUGACGAGUCUCUGAGAUGAGACGAAA
M33001.1/56-111     ACGCUGUC.UGUACUUAUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAA
#=GC SS_cons        .<<<<<<..<<<<<........>>>>>.......<<<<........>>>>...>

AJ550911.1/56-3     CUUUUG
AJ005300.1/282-335  CUCUUG
AJ550910.1/282-336  CUCUUC
M33001.1/56-111     CAGCGC
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:133
#=GF ID  Hammerhead_3:133

AF170503.1/280-333  GAAAGGUCUGUGCUU.....AGCACACUGACGAGUUCCUGAAAUGGAACGAAAC
AJ550906.1/56-3     CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGUCGCUGCGAUGCGACGAAAC
AJ550907.1/281-333  AAAGAGUC.GCGCUU.....AGCGCACUGAUGAGUCUCUGAGAUGAGACGAAAC
J02386.1/42-95      UGUCCGUA.GUGGAUGUGUAUCCACUCUGAUGAGUCCAA....AAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AF170503.1/280-333  CUUUU
AJ550906.1/56-3     UUAUG
AJ550907.1/281-333  UCUUC
J02386.1/42-95      GGAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:134
#=GF ID  Hammerhead_3:134

AJ005305.1/56-3     CAAAAGUCUGGGCUA.....AGCCCACUGACGAGCCGCUGGGAUACGGCGAAAC
AJ550908.1/281-334  GAAGAGUCUGCGCUU.....AGCGCACUCAUGAGUCUCUGAGAUGAGACGAAAC
AJ550898.1/282-335  GAAGAGUCUGCGCUA.....AGCGCACUGAUGAGUCUUUGAAAUAAGACGAAAC
M33001.1/56-111     ACGCUGUCUGUACUUAUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ005305.1/56-3     UUUUG
AJ550908.1/281-334  UCUUC
AJ550898.1/282-335  UCUUC
M33001.1/56-111     AGCGC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:135
#=GF ID  Hammerhead_3:135

AJ295015.1/58-1     ACAGAGUCUGACAAACCGUCACUGAAGACGUUCAACUUGCGUUGAACAGAAACU
AJ550901.1/282-334  GAAGAGUC.GCGCUAAGCGCACUGAUGAGUCUUUGA....GAUAAGACGAAACU
AJ550907.1/56-3     CAUAAGUCUGGGCUUAGCCUACUGAUGAGUCGCUGC....GAUGCGACGAAACU
AJ241823.1/282-335  AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUAA....AAUGAGACGAAACU
#=GC SS_cons        .<<<<<<.<<<<<...>>>>>.......<<<<............>>>>...>>>

AJ295015.1/58-1     CUGC
AJ550901.1/282-334  CUUC
AJ550907.1/56-3     UAUG
AJ241823.1/282-335  CUUU
#=GC SS_cons        >>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:136
#=GF ID  Hammerhead_3:136

AJ241840.1/56-3     CAGAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAAC
AF170523.1/55-3     CAAAAGUCUGGGCUU.....AG.CCACUGAUGAGCCGUUGAGAUACGGCGAAAC
AJ241847.1/281-334  GAAGAGUCUGUGCUA.....AGCACACUGAUGAGUUUCUGAAAUGAGACGAAAC
M33001.1/56-111     ACGCUGUCUGUACUUAUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ241840.1/56-3     UUUUG
AF170523.1/55-3     UUUUG
AJ241847.1/281-334  UCUUG
M33001.1/56-111     AGCGC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:137
#=GF ID  Hammerhead_3:137

AJ295015.1/58-1     ACAGAGUCUGACAAACCGUCACUGAAGACGUUCAACUUGCGUUGAACAGAAACU
AF170503.1/280-333  GAAAGGUCUGUGCUUAGCACACUGACGAGUUCCUGA....AAUGGAACGAAACC
AJ005302.1/281-334  AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGA....AUUGAGACGAAACU
AJ550909.1/282-333  GAAGAGUC.GCGCUUAGCGCACUGAUGAGUCUCUGA.....AUGAGACGAAACU
#=GC SS_cons        .<<<<<<.<<<<<...>>>>>.......<<<<............>>>>...>>>

AJ295015.1/58-1     CUGC
AF170503.1/280-333  UUUU
AJ005302.1/281-334  CUUG
AJ550909.1/282-333  CUUC
#=GC SS_cons        >>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:138
#=GF ID  Hammerhead_3:138

AJ241819.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGUUGAAAUACGGCGAAAC
AJ241843.1/56-3     CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGCCACUGAAAUGCGGCGAAAC
AJ550911.1/282-335  GAAGAGUCUGUGCUA.....AGCACACUGACGAGUCUCUGAAAUGAGACGAAAC
M33001.1/56-111     ACGCUGUCUGUACUUAUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ241819.1/56-3     UUUUG
AJ241843.1/56-3     UUUUG
AJ550911.1/282-335  UCUUC
M33001.1/56-111     AGCGC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:139
#=GF ID  Hammerhead_3:139

AF170504.1/284-337  GAUAAGUCUGUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AJ005318.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGUUGAGAUACGGUGAAAC
AJ005312.1/282-335  GAUGAGUCUGUGCUA.....AGCACACUGAUGAGUCUAUGAAAUGAGACGAAAC
M33001.1/56-111     ACGCUGUCUGUACUUAUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AF170504.1/284-337  UUAUC
AJ005318.1/56-3     UUAUG
AJ005312.1/282-335  UCAUA
M33001.1/56-111     AGCGC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:140
#=GF ID  Hammerhead_3:140

M83545.1/56-3       CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGUCGCUGAAAUGCGACGAAAC
AJ005300.1/282-335  UAAGAGUCUGUGGUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AJ005319.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAAC
M33000.1/55-110     ACGCUGUCUGUACUUGUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

M83545.1/56-3       UUAUG
AJ005300.1/282-335  UCUUG
AJ005319.1/56-3     UUAUG
M33000.1/55-110     AGCGC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:141
#=GF ID  Hammerhead_3:141

AJ005303.1/56-3     CAAAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAAC
AJ241838.1/56-3     CAAAAGUCUGGGCUA.....AGCCCACUGAUGAGCUGCUGAAAUGCGGCAAAAC
AJ550907.1/281-333  AAAGAGUC.GCGCUU.....AGCGCACUGAUGAGUCUCUGAGAUGAGACGAAAC
M33001.1/56-111     ACGCUGUCUGUACUUAUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ005303.1/56-3     UUUUG
AJ241838.1/56-3     UUUUG
AJ550907.1/281-333  UCUUC
M33001.1/56-111     AGCGC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:142
#=GF ID  Hammerhead_3:142

AJ295015.1/58-1     ACAGAGUCUGACAAACCGUCACUGAAGACGUUCAACUUGCGUUGAACAGAAACU
AJ005321.1/281-333  GAAGAGUC.GUGCUAAGCACACUGAUGAGUCUCUGA....AAUGAGACGAAACU
AJ241838.1/56-3     CAAAAGUCUGGGCUAAGCCCACUGAUGAGCUGCUGA....AAUGCGGCAAAACU
AJ550899.1/56-3     CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGC....GAUAAGGCGAAACU
#=GC SS_cons        .<<<<<<.<<<<<...>>>>>.......<<<<............>>>>...>>>

AJ295015.1/58-1     CUGC
AJ005321.1/281-333  CUUG
AJ241838.1/56-3     UUUG
AJ550899.1/56-3     UAUG
#=GC SS_cons        >>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:143
#=GF ID  Hammerhead_3:143

AF170504.1/284-337  GAUAAGUCUGUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AJ241833.1/282-334  AAAGAGUC.GUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AF170519.1/55-3     CAUAAGUCUGGGCUU.....AG.CCACUGAUGAGCCGUUGAGAUACGGCGAAAC
J02386.1/42-95      UGUCCGUA.GUGGAUGUGUAUCCACUCUGAUGAGUCCAA....AAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AF170504.1/284-337  UUAUC
AJ241833.1/282-334  UCUUU
AF170519.1/55-3     UUAUG
J02386.1/42-95      GGAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:144
#=GF ID  Hammerhead_3:144

AJ241833.1/282-334  AAAGAGUC.GUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AF339740.1/56-3     CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGGAAC
AJ241828.1/56-3     CAUAAGUCUGGGUUA.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAAC
M33000.1/55-110     ACGCUGUCUGUACUUGUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ241833.1/282-334  UCUUU
AF339740.1/56-3     UUAUG
AJ241828.1/56-3     UUAUG
M33000.1/55-110     AGCGC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:145
#=GF ID  Hammerhead_3:145

AJ241843.1/56-3     CAUAAGUC.UGGGCUU.....AGCCCACUGAUGAGCCACUGAAAUGCGGCGAAA
AJ241850.1/282-334  UAAGAGUC..GUGCUA.....AGCACACUGAUGAGUCUCUGAAAAGAGACGAAA
AJ550910.1/282-336  GAAGAGUCCUGCGCUU.....AGCGCACUGACGAGUCUCUGAGAUGAGACGAAA
J02386.1/42-95      UGUCCGUA..GUGGAUGUGUAUCCACUCUGAUGAGUCCAA....AAGGACGAAA
#=GC SS_cons        .<<<<<<..<<<<<........>>>>>.......<<<<........>>>>...>

AJ241843.1/56-3     CUUUUG
AJ241850.1/282-334  CUCUUU
AJ550910.1/282-336  CUCUUC
J02386.1/42-95      CGGAUG
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:146
#=GF ID  Hammerhead_3:146

AJ241819.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGUUGAAAUACGGCGAAAC
AJ241845.1/282-335  GAUGAGUCUGUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AJ550909.1/282-333  GAAGAGUC.GCGCUU.....AGCGCACUGAUGAGUCUCUGA.AUGAGACGAAAC
J02439.1/42-95      UGUCCGUA.GUGGAUGUGUAUCCACUCUGAUGAGUCCGA....AAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ241819.1/56-3     UUUUG
AJ241845.1/282-335  UCAUG
AJ550909.1/282-333  UCUUC
J02439.1/42-95      GGAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:147
#=GF ID  Hammerhead_3:147

AJ005321.1/281-333  GAAGAGUC.GUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AJ550908.1/281-334  GAAGAGUCUGCGCUU.....AGCGCACUCAUGAGUCUCUGAGAUGAGACGAAAC
AF339739.1/56-3     CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGGCGUUGAGAUACGGCGAAAC
J02386.1/42-95      UGUCCGUA.GUGGAUGUGUAUCCACUCUGAUGAGUCCAA....AAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ005321.1/281-333  UCUUG
AJ550908.1/281-334  UCUUC
AF339739.1/56-3     UUAUG
J02386.1/42-95      GGAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:148
#=GF ID  Hammerhead_3:148

AJ550901.1/282-334  GAAGAGUC.GCGCUA.....AGCGCACUGAUGAGUCUUUGAGAUAAGACGAAAC
AF170519.1/55-3     CAUAAGUCUGGGCUU.....AG.CCACUGAUGAGCCGUUGAGAUACGGCGAAAC
AJ241831.1/281-334  GAAGAGUCUGUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
J02439.1/42-95      UGUCCGUA.GUGGAUGUGUAUCCACUCUGAUGAGUCCGA....AAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ550901.1/282-334  UCUUC
AF170519.1/55-3     UUAUG
AJ241831.1/281-334  UCUUA
J02439.1/42-95      GGAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:149
#=GF ID  Hammerhead_3:149

AJ550901.1/282-334  GAAGAGUC.GCGCUA.....AGCGCACUGAUGAGUCUUUGAGAUAAGACGAAAC
AJ005310.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAAC
AF170520.1/282-335  GAUAAGUCUGUGCUU.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
J02386.1/42-95      UGUCCGUA.GUGGAUGUGUAUCCACUCUGAUGAGUCCAA....AAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ550901.1/282-334  UCUUC
AJ005310.1/56-3     UUUUG
AF170520.1/282-335  UUAUC
J02386.1/42-95      GGAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:150
#=GF ID  Hammerhead_3:150

AJ295015.1/58-1     ACAGAGUCUGACAAACCGUCACUGAAGACGUUCAACUUGCGUUGAACAGAAACU
AF170519.1/55-3     CAUAAGUCUGGGCUUAG.CCACUGAUGAGCCGUUGA....GAUACGGCGAAACU
AJ550907.1/281-333  AAAGAGUC.GCGCUUAGCGCACUGAUGAGUCUCUGA....GAUGAGACGAAACU
AJ005294.1/282-334  UAAGAGUC.GUGCUAAGCACACUGAUGAGUCUCUGA....AAUGAGACGAAACU
#=GC SS_cons        .<<<<<<.<<<<<...>>>>>.......<<<<............>>>>...>>>

AJ295015.1/58-1     CUGC
AF170519.1/55-3     UAUG
AJ550907.1/281-333  CUUC
AJ005294.1/282-334  CUUG
#=GC SS_cons        >>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:151
#=GF ID  Hammerhead_3:151

AJ241839.1/282-334  GAUGAGUC.GUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AF170523.1/55-3     CAAAAGUCUGGGCUU.....AG.CCACUGAUGAGCCGUUGAGAUACGGCGAAAC
AJ550899.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCUUUGCGAUAAGGCGAAAC
J02386.1/42-95      UGUCCGUA.GUGGAUGUGUAUCCACUCUGAUGAGUCCAA....AAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ241839.1/282-334  UCAUA
AF170523.1/55-3     UUUUG
AJ550899.1/56-3     UUAUG
J02386.1/42-95      GGAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:152
#=GF ID  Hammerhead_3:152

AJ550903.1/281-333  GAAGAGUC.GUGCUU.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AF339739.1/56-3     CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGGCGUUGAGAUACGGCGAAAC
AJ241838.1/56-3     CAAAAGUCUGGGCUA.....AGCCCACUGAUGAGCUGCUGAAAUGCGGCAAAAC
J02439.1/42-95      UGUCCGUA.GUGGAUGUGUAUCCACUCUGAUGAGUCCGA....AAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ550903.1/281-333  UCUUU
AF339739.1/56-3     UUAUG
AJ241838.1/56-3     UUUUG
J02439.1/42-95      GGAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:153
#=GF ID  Hammerhead_3:153

AJ295015.1/58-1     ACAGAGUCUGACAAACCGUCACUGAAGACGUUCAACUUGCGUUGAACAGAAACU
AF339740.1/56-3     CAUAAGUCUGGGCUUAGCCCACUGAUGAGCCGUUGA....GAUACGGCGGAACU
AJ550909.1/56-3     CAUAAGUCUGGGCUUAGCCCACUGAUGAGUUGCUGC....GAUGCAACGAAACU
AJ241831.1/281-334  GAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGA....AAUGAGACGAAACU
#=GC SS_cons        .<<<<<<.<<<<<...>>>>>.......<<<<............>>>>...>>>

AJ295015.1/58-1     CUGC
AF339740.1/56-3     UAUG
AJ550909.1/56-3     UAUG
AJ241831.1/281-334  CUUA
#=GC SS_cons        >>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:154
#=GF ID  Hammerhead_3:154

AJ550901.1/282-334  GAAGAGUC.GCGCUA.....AGCGCACUGAUGAGUCUUUGAGAUAAGACGAAAC
AJ005303.1/56-3     CAAAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAAC
AF170509.1/56-3     CAUAAGUCUAGGCUU.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAAC
M33000.1/55-110     ACGCUGUCUGUACUUGUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ550901.1/282-334  UCUUC
AJ005303.1/56-3     UUUUG
AF170509.1/56-3     UUAUG
M33000.1/55-110     AGCGC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:155
#=GF ID  Hammerhead_3:155

AJ295018.1/58-1     ACAGGGUCUGACAAACCGUCACUGAAGACGUUCAACUUGCGUUGAACAGAAACU
AJ241839.1/282-334  GAUGAGUC.GUGCUAAGCACACUGAUGAGUCUCUGA....AAUGAGACGAAACU
AJ550901.1/282-334  GAAGAGUC.GCGCUAAGCGCACUGAUGAGUCUUUGA....GAUAAGACGAAACU
AF170499.1/56-3     CAAAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGA....AAUGCGGCGAAACU
#=GC SS_cons        .<<<<<<.<<<<<...>>>>>.......<<<<............>>>>...>>>

AJ295018.1/58-1     CUGC
AJ241839.1/282-334  CAUA
AJ550901.1/282-334  CUUC
AF170499.1/56-3     UUUG
#=GC SS_cons        >>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:156
#=GF ID  Hammerhead_3:156

AJ295018.1/58-1   ACAGGGUCUGACAAACCGUCACUGAAGACGUUCAACUUGCGUUGAACAGAAACUCU
AJ241840.1/56-3   CAGAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGA....AAUGCGGCGAAACUUU
AJ550899.1/56-3   CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCUUUGC....GAUAAGGCGAAACUUA
M83545.1/282-335  GAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGA....GAUGAGACGAAACUCU
#=GC SS_cons      .<<<<<<.<<<<<...>>>>>.......<<<<............>>>>...>>>>>

AJ295018.1/58-1   GC
AJ241840.1/56-3   UG
AJ550899.1/56-3   UG
M83545.1/282-335  UC
#=GC SS_cons      >.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:157
#=GF ID  Hammerhead_3:157

AJ295015.1/58-1     ACAGAGUCUGACAAACCGUCACUGAAGACGUUCAACUUGCGUUGAACAGAAACU
AJ005305.1/56-3     CAAAAGUCUGGGCUAAGCCCACUGACGAGCCGCUGG....GAUACGGCGAAACU
AJ241847.1/281-334  GAAGAGUCUGUGCUAAGCACACUGAUGAGUUUCUGA....AAUGAGACGAAACU
AJ005299.1/282-335  UAAGAGUCUGUGCUAAGCACACUGAUGAAUCUCUGA....AAUGAGACGAAACU
#=GC SS_cons        .<<<<<<.<<<<<...>>>>>.......<<<<............>>>>...>>>

AJ295015.1/58-1     CUGC
AJ005305.1/56-3     UUUG
AJ241847.1/281-334  CUUG
AJ005299.1/282-335  CUUG
#=GC SS_cons        >>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:158
#=GF ID  Hammerhead_3:158

AF170504.1/284-337  GAUAAGUCUGUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AJ005303.1/56-3     CAAAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAAC
AJ005302.1/281-334  AAAGAGUCUGUGCUA.....AGCACACUGAUGAGUCUCUGAAUUGAGACGAAAC
J02439.1/42-95      UGUCCGUA.GUGGAUGUGUAUCCACUCUGAUGAGUCCGA....AAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AF170504.1/284-337  UUAUC
AJ005303.1/56-3     UUUUG
AJ005302.1/281-334  UCUUG
J02439.1/42-95      GGAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:159
#=GF ID  Hammerhead_3:159

AJ550909.1/56-3     CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGUUGCUGCGAUGCAACGAAAC
AJ241850.1/282-334  UAAGAGUC.GUGCUA.....AGCACACUGAUGAGUCUCUGAAAAGAGACGAAAC
AJ005314.1/281-334  AAAGAGUCUGUGCUA.....AGCACACUGACGAGUCUCUGAAAUGAGACGAAAC
J02439.1/42-95      UGUCCGUA.GUGGAUGUGUAUCCACUCUGAUGAGUCCGA....AAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ550909.1/56-3     UUAUG
AJ241850.1/282-334  UCUUU
AJ005314.1/281-334  UCUUU
J02439.1/42-95      GGAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:160
#=GF ID  Hammerhead_3:160

AJ295015.1/58-1     ACAGAGUCUGACAAA.CCGUCACUGAAGACGUUCAACUUGCGUUGAACAGAAAC
AJ241833.1/282-334  AAAGAGUC.GUGCUA.AGCACACUGAUGAGUCUCUGA....AAUGAGACGAAAC
AJ241841.1/57-3     CAAAAGUUUGGGCUAAAGCCCACUGAUGAGCCGCUGA....AAUGCGGCGAAAC
AJ005322.1/56-3     CAUAAGUCUGGGCUA.AGCCCACUGACGAGCCGUUGA....GAUACGGCGAAAC
#=GC SS_cons        .<<<<<<.<<<<<....>>>>>.......<<<<............>>>>...>>

AJ295015.1/58-1     UCUGC
AJ241833.1/282-334  UCUUU
AJ241841.1/57-3     UUUUG
AJ005322.1/56-3     UUAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:161
#=GF ID  Hammerhead_3:161

AJ241828.1/56-3     CAUAAGUCUGGGUUA.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAAC
AJ005305.1/56-3     CAAAAGUCUGGGCUA.....AGCCCACUGACGAGCCGCUGGGAUACGGCGAAAC
AJ005312.1/282-335  GAUGAGUCUGUGCUA.....AGCACACUGAUGAGUCUAUGAAAUGAGACGAAAC
J02439.1/42-95      UGUCCGUA.GUGGAUGUGUAUCCACUCUGAUGAGUCCGA....AAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ241828.1/56-3     UUAUG
AJ005305.1/56-3     UUUUG
AJ005312.1/282-335  UCAUA
J02439.1/42-95      GGAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:162
#=GF ID  Hammerhead_3:162

AF170503.1/55-3     CAUAAGUCUGGGCUU.....AG.CCACUGACGAGUCGCUGGGAUACGGCGAAAC
AJ005299.1/282-335  UAAGAGUCUGUGCUA.....AGCACACUGAUGAAUCUCUGAAAUGAGACGAAAC
AJ005322.1/281-334  GAAGAGUCUGUGCUA.....AGCACACUGACGAGUCUCUGAAAUGAGACGAAAC
J02439.1/42-95      UGUCCGUA.GUGGAUGUGUAUCCACUCUGAUGAGUCCGA....AAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AF170503.1/55-3     UUAUG
AJ005299.1/282-335  UCUUG
AJ005322.1/281-334  UCUUU
J02439.1/42-95      GGAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:163
#=GF ID  Hammerhead_3:163

AJ005302.1/281-334  AAAGAGUCUGUGCUA.....AGCACACUGAUGAGUCUCUGAAUUGAGACGAAAC
AJ005319.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAAC
AJ005294.1/282-334  UAAGAGUC.GUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
J02386.1/42-95      UGUCCGUA.GUGGAUGUGUAUCCACUCUGAUGAGUCCAA....AAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ005302.1/281-334  UCUUG
AJ005319.1/56-3     UUAUG
AJ005294.1/282-334  UCUUG
J02386.1/42-95      GGAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:164
#=GF ID  Hammerhead_3:164

AJ295015.1/58-1     ACAGAGUCUGACAAACCGUCACUGAAGACGUUCAACUUGCGUUGAACAGAAACU
AJ005298.1/56-3     CAUAAGUCUGGGCUAAGCCCACUGAUGAGCCGUUGA....GAUACGGCGAAACU
AJ005320.1/281-333  GAAGAGUC.GUGCUAAGCACACUGAUGAGUCUCUGA....AAUGAGACGAAACU
AJ550911.1/282-335  GAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGA....AAUGAGACGAAACU
#=GC SS_cons        .<<<<<<.<<<<<...>>>>>.......<<<<............>>>>...>>>

AJ295015.1/58-1     CUGC
AJ005298.1/56-3     UUUG
AJ005320.1/281-333  CUUU
AJ550911.1/282-335  CUUC
#=GC SS_cons        >>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:165
#=GF ID  Hammerhead_3:165

AJ295018.1/58-1     ACAGGGUCUGACAAACCGUCACUGAAGACGUUCAACUUGCGUUGAACAGAAACU
AJ005321.1/281-333  GAAGAGUC.GUGCUAAGCACACUGAUGAGUCUCUGA....AAUGAGACGAAACU
AJ005305.1/56-3     CAAAAGUCUGGGCUAAGCCCACUGACGAGCCGCUGG....GAUACGGCGAAACU
AJ005314.1/281-334  AAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGA....AAUGAGACGAAACU
#=GC SS_cons        .<<<<<<.<<<<<...>>>>>.......<<<<............>>>>...>>>

AJ295018.1/58-1     CUGC
AJ005321.1/281-333  CUUG
AJ005305.1/56-3     UUUG
AJ005314.1/281-334  CUUU
#=GC SS_cons        >>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:166
#=GF ID  Hammerhead_3:166

AJ295018.1/58-1     ACAGGGUCUGACAAACCGUCACUGAAGACGUUCAACUUGCGUUGAACAGAAACU
AJ550912.1/56-3     CAAAAGUCUGGGCUAAGCCCACUGAUGAGUUGCUGA....GAUGCGACGAAACU
AJ005302.1/281-334  AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGA....AUUGAGACGAAACU
AJ005322.1/281-334  GAAGAGUCUGUGCUAAGCACACUGACGAGUCUCUGA....AAUGAGACGAAACU
#=GC SS_cons        .<<<<<<.<<<<<...>>>>>.......<<<<............>>>>...>>>

AJ295018.1/58-1     CUGC
AJ550912.1/56-3     UUUG
AJ005302.1/281-334  CUUG
AJ005322.1/281-334  CUUU
#=GC SS_cons        >>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:167
#=GF ID  Hammerhead_3:167

AJ295015.1/58-1     ACAGAGUCUGACAAACCGUCACUGAAGACGUUCAACUUGCGUUGAACAGAAACU
AF170504.1/284-337  GAUAAGUCUGUGCUAAGCACACUGAUGAGUCUCUGA....AAUGAGACGAAACU
AJ241840.1/56-3     CAGAAGUCUGGGCUAAGCCCACUGAUGAGCCGCUGA....AAUGCGGCGAAACU
AJ005300.1/282-335  UAAGAGUCUGUGGUAAGCACACUGAUGAGUCUCUGA....AAUGAGACGAAACU
#=GC SS_cons        .<<<<<<.<<<<<...>>>>>.......<<<<............>>>>...>>>

AJ295015.1/58-1     CUGC
AF170504.1/284-337  UAUC
AJ241840.1/56-3     UUUG
AJ005300.1/282-335  CUUG
#=GC SS_cons        >>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:168
#=GF ID  Hammerhead_3:168

AJ241839.1/282-334  GAUGAGUC.GUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AJ241843.1/56-3     CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGCCACUGAAAUGCGGCGAAAC
AF170520.1/282-335  GAUAAGUCUGUGCUU.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
J02439.1/42-95      UGUCCGUA.GUGGAUGUGUAUCCACUCUGAUGAGUCCGA....AAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ241839.1/282-334  UCAUA
AJ241843.1/56-3     UUUUG
AF170520.1/282-335  UUAUC
J02439.1/42-95      GGAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:169
#=GF ID  Hammerhead_3:169

AJ536620.1/206-152  CCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAA....AAGGGCGAAAC
AJ005303.1/56-3     CAAAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAAC
AJ241850.1/282-334  UAAGAGUC.GUGCUA.....AGCACACUGAUGAGUCUCUGAAAAGAGACGAAAC
AJ550900.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCUUUGCGACAAGGCGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ536620.1/206-152  GGUAC
AJ005303.1/56-3     UUUUG
AJ241850.1/282-334  UCUUU
AJ550900.1/56-3     UUAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:170
#=GF ID  Hammerhead_3:170

AJ295018.1/58-1     ACAGGGUCUGACAAACCGUCACUGAAGACGUUCAACUUGCGUUGAACAGAAACU
AJ241828.1/56-3     CAUAAGUCUGGGUUAAGCCCACUGAUGAGCCGUUGA....GAUACGGCGAAACU
AJ241847.1/281-334  GAAGAGUCUGUGCUAAGCACACUGAUGAGUUUCUGA....AAUGAGACGAAACU
AJ005300.1/282-335  UAAGAGUCUGUGGUAAGCACACUGAUGAGUCUCUGA....AAUGAGACGAAACU
#=GC SS_cons        .<<<<<<.<<<<<...>>>>>.......<<<<............>>>>...>>>

AJ295018.1/58-1     CUGC
AJ241828.1/56-3     UAUG
AJ241847.1/281-334  CUUG
AJ005300.1/282-335  CUUG
#=GC SS_cons        >>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:171
#=GF ID  Hammerhead_3:171

AJ295018.1/58-1     ACAGGGUCUGACAAACCGUCACUGAAGACGUUCAACUUGCGUUGAACAGAAACU
AF170503.1/55-3     CAUAAGUCUGGGCUUAG.CCACUGACGAGUCGCUGG....GAUACGGCGAAACU
AJ550908.1/281-334  GAAGAGUCUGCGCUUAGCGCACUCAUGAGUCUCUGA....GAUGAGACGAAACU
AJ550909.1/282-333  GAAGAGUC.GCGCUUAGCGCACUGAUGAGUCUCUGA.....AUGAGACGAAACU
#=GC SS_cons        .<<<<<<.<<<<<...>>>>>.......<<<<............>>>>...>>>

AJ295018.1/58-1     CUGC
AF170503.1/55-3     UAUG
AJ550908.1/281-334  CUUC
AJ550909.1/282-333  CUUC
#=GC SS_cons        >>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:172
#=GF ID  Hammerhead_3:172

AJ536620.1/206-152  CCACCGUCGGAAAGUGUGCGCUUUCCCUGAUGAGCCCAA....AAGGGCGAAAC
AJ005298.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAAC
AJ241843.1/56-3     CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGCCACUGAAAUGCGGCGAAAC
AJ550909.1/282-333  GAAGAGUC.GCGCUU.....AGCGCACUGAUGAGUCUCUGA.AUGAGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ536620.1/206-152  GGUAC
AJ005298.1/56-3     UUUUG
AJ241843.1/56-3     UUUUG
AJ550909.1/282-333  UCUUC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:173
#=GF ID  Hammerhead_3:173

AJ295015.1/58-1     ACAGAGUC.UGACAAACCGUCACUGAAGACGUUCAACUUGCGUUGAACAGAAAC
AF170503.1/55-3     CAUAAGUC.UGGGCUUAG.CCACUGACGAGUCGCUGG....GAUACGGCGAAAC
AF339739.1/56-3     CAUAAGUC.UGGGCUUAGCCCACUGAUGAGGCGUUGA....GAUACGGCGAAAC
AJ550910.1/282-336  GAAGAGUCCUGCGCUUAGCGCACUGACGAGUCUCUGA....GAUGAGACGAAAC
#=GC SS_cons        .<<<<<<..<<<<<...>>>>>.......<<<<............>>>>...>>

AJ295015.1/58-1     UCUGC
AF170503.1/55-3     UUAUG
AF339739.1/56-3     UUAUG
AJ550910.1/282-336  UCUUC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:174
#=GF ID  Hammerhead_3:174

AJ536619.1/206-152  CCACCGUCGGAAAGUGUGUACUUUCCCUGAUGAGUCCGA....AAGGACGAAAC
AF170499.1/56-3     CAAAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAAC
AF170520.1/282-335  GAUAAGUCUGUGCUU.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AJ550909.1/282-333  GAAGAGUC.GCGCUU.....AGCGCACUGAUGAGUCUCUGA.AUGAGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ536619.1/206-152  GGUAC
AF170499.1/56-3     UUUUG
AF170520.1/282-335  UUAUC
AJ550909.1/282-333  UCUUC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:175
#=GF ID  Hammerhead_3:175

AJ005310.1/56-3  CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUU
AJ550909.1/56-3  CAUAAGUCUGGGCUU.....AGCCCACUGAUGAGUUGCUGCGAUGCAACGAAACUUA
AJ005319.1/56-3  CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUA
M33001.1/56-111  ACGCUGUCUGUACUUAUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAACAGC
#=GC SS_cons     .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>>>>

AJ005310.1/56-3  UG
AJ550909.1/56-3  UG
AJ005319.1/56-3  UG
M33001.1/56-111  GC
#=GC SS_cons     >.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:176
#=GF ID  Hammerhead_3:176

AJ536619.1/206-152  CCACCGUCGGAAAGUGUGUACUUUCCCUGAUGAGUCCGA....AAGGACGAAAC
AJ550901.1/282-334  GAAGAGUC.GCGCUA.....AGCGCACUGAUGAGUCUUUGAGAUAAGACGAAAC
AJ005320.1/281-333  GAAGAGUC.GUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AJ550899.1/56-3     CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCUUUGCGAUAAGGCGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ536619.1/206-152  GGUAC
AJ550901.1/282-334  UCUUC
AJ005320.1/281-333  UCUUU
AJ550899.1/56-3     UUAUG
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:177
#=GF ID  Hammerhead_3:177

AJ005302.1/281-334  AAAGAGUCUGUGCUA.....AGCACACUGAUGAGUCUCUGAAUUGAGACGAAAC
AJ241850.1/282-334  UAAGAGUC.GUGCUA.....AGCACACUGAUGAGUCUCUGAAAAGAGACGAAAC
AF170520.1/282-335  GAUAAGUCUGUGCUU.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
M33001.1/56-111     ACGCUGUCUGUACUUAUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ005302.1/281-334  UCUUG
AJ241850.1/282-334  UCUUU
AF170520.1/282-335  UUAUC
M33001.1/56-111     AGCGC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:178
#=GF ID  Hammerhead_3:178

AF170504.1/284-337  GAUAAGUCUGUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AJ241847.1/281-334  GAAGAGUCUGUGCUA.....AGCACACUGAUGAGUUUCUGAAAUGAGACGAAAC
AJ550898.1/282-335  GAAGAGUCUGCGCUA.....AGCGCACUGAUGAGUCUUUGAAAUAAGACGAAAC
M33000.1/55-110     ACGCUGUCUGUACUUGUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AF170504.1/284-337  UUAUC
AJ241847.1/281-334  UCUUG
AJ550898.1/282-335  UCUUC
M33000.1/55-110     AGCGC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:179
#=GF ID  Hammerhead_3:179

AJ550898.1/282-335  GAAGAGUCUGCGCUA.....AGCGCACUGAUGAGUCUUUGAAAUAAGACGAAAC
AF170516.1/283-335  GAAGAGUC.GUGCUU.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
M83545.1/282-335    GAAGAGUCUGUGCUA.....AGCACACUGACGAGUCUCUGAGAUGAGACGAAAC
M33001.1/56-111     ACGCUGUCUGUACUUAUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ550898.1/282-335  UCUUC
AF170516.1/283-335  UCUUC
M83545.1/282-335    UCUUC
M33001.1/56-111     AGCGC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:180
#=GF ID  Hammerhead_3:180

AJ550901.1/282-334  GAAGAGUC.GCGCUA.....AGCGCACUGAUGAGUCUUUGAGAUAAGACGAAAC
AJ550911.1/282-335  GAAGAGUCUGUGCUA.....AGCACACUGACGAGUCUCUGAAAUGAGACGAAAC
AJ005294.1/282-334  UAAGAGUC.GUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
M33001.1/56-111     ACGCUGUCUGUACUUAUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ550901.1/282-334  UCUUC
AJ550911.1/282-335  UCUUC
AJ005294.1/282-334  UCUUG
M33001.1/56-111     AGCGC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:181
#=GF ID  Hammerhead_3:181

AJ550908.1/281-334  GAAGAGUC.UGCGCUU.....AGCGCACUCAUGAGUCUCUGAGAUGAGACGAAA
AJ005322.1/281-334  GAAGAGUC.UGUGCUA.....AGCACACUGACGAGUCUCUGAAAUGAGACGAAA
AJ550910.1/282-336  GAAGAGUCCUGCGCUU.....AGCGCACUGACGAGUCUCUGAGAUGAGACGAAA
M33000.1/55-110     ACGCUGUC.UGUACUUGUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAA
#=GC SS_cons        .<<<<<<..<<<<<........>>>>>.......<<<<........>>>>...>

AJ550908.1/281-334  CUCUUC
AJ005322.1/281-334  CUCUUU
AJ550910.1/282-336  CUCUUC
M33000.1/55-110     CAGCGC
#=GC SS_cons        >>>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:182
#=GF ID  Hammerhead_3:182

AJ241839.1/282-334  GAUGAGUC.GUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AJ005312.1/282-335  GAUGAGUCUGUGCUA.....AGCACACUGAUGAGUCUAUGAAAUGAGACGAAAC
AJ550909.1/282-333  GAAGAGUC.GCGCUU.....AGCGCACUGAUGAGUCUCUGA.AUGAGACGAAAC
M33001.1/56-111     ACGCUGUCUGUACUUAUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ241839.1/282-334  UCAUA
AJ005312.1/282-335  UCAUA
AJ550909.1/282-333  UCUUC
M33001.1/56-111     AGCGC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:183
#=GF ID  Hammerhead_3:183

AJ241833.1/282-334  AAAGAGUC.GUGCUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
AJ241847.1/281-334  GAAGAGUCUGUGCUA.....AGCACACUGAUGAGUUUCUGAAAUGAGACGAAAC
AJ005300.1/282-335  UAAGAGUCUGUGGUA.....AGCACACUGAUGAGUCUCUGAAAUGAGACGAAAC
M33001.1/56-111     ACGCUGUCUGUACUUAUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAAC
#=GC SS_cons        .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>

AJ241833.1/282-334  UCUUU
AJ241847.1/281-334  UCUUG
AJ005300.1/282-335  UCUUG
M33001.1/56-111     AGCGC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:184
#=GF ID  Hammerhead_3:184

AJ295018.1/58-1     ACAGGGUC.UGACAAACCGUCACUGAAGACGUUCAACUUGCGUUGAACAGAAAC
AJ005321.1/281-333  GAAGAGUC..GUGCUAAGCACACUGAUGAGUCUCUGA....AAUGAGACGAAAC
M83545.1/282-335    GAAGAGUC.UGUGCUAAGCACACUGACGAGUCUCUGA....GAUGAGACGAAAC
AJ550910.1/282-336  GAAGAGUCCUGCGCUUAGCGCACUGACGAGUCUCUGA....GAUGAGACGAAAC
#=GC SS_cons        .<<<<<<..<<<<<...>>>>>.......<<<<............>>>>...>>

AJ295018.1/58-1     UCUGC
AJ005321.1/281-333  UCUUG
M83545.1/282-335    UCUUC
AJ550910.1/282-336  UCUUC
#=GC SS_cons        >>>>.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:185
#=GF ID  Hammerhead_3:185

AJ005298.1/56-3  CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUU
AF170503.1/55-3  CAUAAGUCUGGGCUU.....AG.CCACUGACGAGUCGCUGGGAUACGGCGAAACUUA
AJ005318.1/56-3  CAUAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGUUGAGAUACGGUGAAACUUA
M33000.1/55-110  ACGCUGUCUGUACUUGUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAACAGC
#=GC SS_cons     .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>>>>

AJ005298.1/56-3  UG
AF170503.1/55-3  UG
AJ005318.1/56-3  UG
M33000.1/55-110  GC
#=GC SS_cons     >.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:186
#=GF ID  Hammerhead_3:186

AJ241840.1/56-3  CAGAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUU
AF170509.1/56-3  CAUAAGUCUAGGCUU.....AGCCCACUGAUGAGCCGUUGAGAUACGGCGAAACUUA
AF170499.1/56-3  CAAAAGUCUGGGCUA.....AGCCCACUGAUGAGCCGCUGAAAUGCGGCGAAACUUU
M33001.1/56-111  ACGCUGUCUGUACUUAUAUCAGUACACUGACGAGUCCCU...AAAGGACGAAACAGC
#=GC SS_cons     .<<<<<<.<<<<<........>>>>>.......<<<<........>>>>...>>>>>

AJ241840.1/56-3  UG
AF170509.1/56-3  UG
AF170499.1/56-3  UG
M33001.1/56-111  GC
#=GC SS_cons     >.
//
# STOCKHOLM 1.0

#=GF AC  RF00008:187
#=GF ID  Hammerhead_3:187

AJ295015.1/58-1     ACAGAGUCUGACAAACCGUCACUGAAGACGUUCAACUUGCGUUGAACAGAAACU
AJ241833.1/282-334  AAAGAGUC.GUGCUAAGCACACUGAUGAGUCUCUGA....AAUGAGACGAAACU
AJ005321.1/281-333  GAAGAGUC.GUGCUAAGCACACUGAUGAGUCUCUGA....AAUGAGACGAAACU
AJ005302.1/281-334  AAAGAGUCUGUGCUAAGCACACUGAUGAGUCUCUGA....AUUGAGACGAAACU
#=GC SS_cons        .<<<<<<.<<<<<...>>>>>.......<<<<............>>>>...>>>

AJ295015.1/58-1     CUGC
AJ241833.1/282-334  CUUU
AJ005321.1/281-333  CUUG
AJ005302.1/281-334  CUUG
#=GC SS_cons        >>>.
//
