The dataset used in the paper: Hisanori Kiryu, Yasuo Tabei, Taishin Kin, and Kiyoshi Asai. Murlet: a practical multiple alignment tool for structural RNA sequences. submitted to Bioinformatics. dataset1_stockholm.txt: 85 multiple alignments extracted from Rfam7.0 database. The number of families is 17. For each family, there are 5 sub alignments of 10 sequences. dataset2_stockholm.txt: 188 multiple alignments of 4 sequences taken from the Hammerhead_3 ribozyme family in the Rfam7.0 database. Reference: Hisanori Kiryu, Yasuo Tabei, Taishin Kin, and Kiyoshi Asai. Murlet: a practical multiple alignment tool for structural RNA sequences. submitted to Bioinformatics. Sam Griffiths-Jones, Alex Bateman, Mhairi Marshall, Ajay Khanna, and Sean R Eddy. Rfam: an RNA family database. Nucleic Acids Res, 31(1):43941, 2003.