# DO NOT DELETE

Aligner.o_D: LoadStat.hpp Util.hpp Vector.hpp Array.hpp IntPairs.hpp
Aligner.o_D: Matrix.hpp UpTriMtx.hpp EScript.hpp Alpha.hpp SeqData.hpp
Aligner.o_D: MSA.hpp ScoreParam.hpp pscfg/PSCFG_Energy.hpp
Aligner.o_D: pscfg/PSCFG_Base.hpp Rect.hpp DPPath.hpp DPRegion.hpp
Aligner.o_D: StripRegion.hpp Trapezoid.hpp StripRegionIterators.cpp
Aligner.o_D: DPDeck.hpp ./pscfg/DPDeckPSCFG.hpp DPScore.hpp
Aligner.o_D: ./pscfg/PSCFG_Energy.hpp ./pscfg/PSCFGEnergyScoreManager.hpp
Aligner.o_D: Profile.hpp ProfileFreqs.hpp ProfileVectors.hpp
Aligner.o_D: ./alifold/Alifold.hpp Aligner.hpp AlignProbData.hpp
Aligner.o_D: SparseProb.hpp PairProbData.hpp ./probcons/ProbCons.hpp
AlignProbData.o_D: SeqData.hpp Util.hpp Vector.hpp Array.hpp IntPairs.hpp
AlignProbData.o_D: Matrix.hpp UpTriMtx.hpp EScript.hpp MSA.hpp DPPath.hpp
AlignProbData.o_D: Rect.hpp GuideTree.hpp Weight.hpp Aligner.hpp DPRegion.hpp
AlignProbData.o_D: StripRegion.hpp Trapezoid.hpp StripRegionIterators.cpp
AlignProbData.o_D: DPDeck.hpp AlignProbData.hpp SparseProb.hpp
AlignProbData.o_D: PairProbData.hpp Job.hpp Scheduler.hpp JobRunner.hpp
Alpha.o_D: Util.hpp Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp UpTriMtx.hpp
Alpha.o_D: Alpha.hpp
PairProbData.o_D: Util.hpp Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp
PairProbData.o_D: UpTriMtx.hpp SeqData.hpp EScript.hpp ScoreParam.hpp
PairProbData.o_D: Alpha.hpp pscfg/PSCFG_Energy.hpp pscfg/PSCFG_Base.hpp
PairProbData.o_D: Rect.hpp GuideTree.hpp Weight.hpp MSA.hpp Profile.hpp
PairProbData.o_D: ProfileFreqs.hpp ProfileVectors.hpp PairProbData.hpp
PairProbData.o_D: SparseProb.hpp Aligner.hpp DPRegion.hpp StripRegion.hpp
PairProbData.o_D: Trapezoid.hpp StripRegionIterators.cpp DPPath.hpp
PairProbData.o_D: DPDeck.hpp AlignProbData.hpp Job.hpp Scheduler.hpp
PairProbData.o_D: JobRunner.hpp
Cluster.o_D: Dmtx.hpp Util.hpp Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp
Cluster.o_D: UpTriMtx.hpp GuideTree.hpp SeqData.hpp EScript.hpp Cluster.hpp
DPDeck.o_D: DPDeck.hpp Util.hpp Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp
DPDeck.o_D: UpTriMtx.hpp
Dmtx.o_D: EScript.hpp Util.hpp Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp
Dmtx.o_D: UpTriMtx.hpp SeqData.hpp MSA.hpp Dmtx.hpp Scheduler.hpp Job.hpp
Dmtx.o_D: JobRunner.hpp DPPath.hpp Rect.hpp
DPPath.o_D: Util.hpp Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp
DPPath.o_D: UpTriMtx.hpp Rect.hpp EScript.hpp DPPath.hpp Trapezoid.hpp
DPPath.o_D: DPRegion.hpp StripRegion.hpp StripRegionIterators.cpp SeqData.hpp
DPPath.o_D: MSA.hpp Weight.hpp Profile.hpp ProfileFreqs.hpp Alpha.hpp
DPPath.o_D: ProfileVectors.hpp
DPRegion.o_D: DPRegion.hpp StripRegion.hpp Util.hpp Vector.hpp Array.hpp
DPRegion.o_D: IntPairs.hpp Matrix.hpp UpTriMtx.hpp Rect.hpp Trapezoid.hpp
DPRegion.o_D: StripRegionIterators.cpp
EScript.o_D: Util.hpp Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp
EScript.o_D: UpTriMtx.hpp Alpha.hpp EScript.hpp SeqData.hpp MSA.hpp
GuideTree.o_D: GuideTree.hpp Util.hpp Vector.hpp Array.hpp IntPairs.hpp
GuideTree.o_D: Matrix.hpp UpTriMtx.hpp SeqData.hpp EScript.hpp
GuideTree.o_D: TreeIterator.hpp TreeIterator.cpp MSA.hpp Dmtx.hpp Cluster.hpp
GuideTree.o_D: Scheduler.hpp Job.hpp JobRunner.hpp DPPath.hpp Rect.hpp
Job.o_D: Util.hpp Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp UpTriMtx.hpp
Job.o_D: Rect.hpp EScript.hpp SeqData.hpp MSA.hpp Weight.hpp DPPath.hpp
Job.o_D: GuideTree.hpp Job.hpp SparseProb.hpp
JobRunner.o_D: Util.hpp Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp
JobRunner.o_D: UpTriMtx.hpp LoadStat.hpp Rect.hpp Trapezoid.hpp EScript.hpp
JobRunner.o_D: Alpha.hpp ScoreParam.hpp pscfg/PSCFG_Energy.hpp
JobRunner.o_D: pscfg/PSCFG_Base.hpp Dmtx.hpp Weight.hpp SeqData.hpp
JobRunner.o_D: GuideTree.hpp Cluster.hpp PairProbData.hpp SparseProb.hpp
JobRunner.o_D: DPPath.hpp MSA.hpp DPRegion.hpp StripRegion.hpp
JobRunner.o_D: StripRegionIterators.cpp DPDeck.hpp Aligner.hpp
JobRunner.o_D: AlignProbData.hpp Job.hpp JobRunner.hpp
LoadStat.o_D: Util.hpp Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp
LoadStat.o_D: UpTriMtx.hpp LoadStat.hpp
main.o_D: Util.hpp Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp UpTriMtx.hpp
main.o_D: Alpha.hpp Opt.hpp LoadStat.hpp Rect.hpp SeqData.hpp EScript.hpp
main.o_D: Profile.hpp ProfileFreqs.hpp ProfileVectors.hpp MSA.hpp
main.o_D: ScoreParam.hpp pscfg/PSCFG_Energy.hpp pscfg/PSCFG_Base.hpp
main.o_D: PairProbData.hpp SparseProb.hpp Dmtx.hpp Weight.hpp GuideTree.hpp
main.o_D: Cluster.hpp Trapezoid.hpp DPPath.hpp DPRegion.hpp StripRegion.hpp
main.o_D: StripRegionIterators.cpp DPDeck.hpp Aligner.hpp AlignProbData.hpp
main.o_D: Scheduler.hpp Job.hpp JobRunner.hpp SeqFamAligner.hpp
main.o_D: ProgressiveAligner.hpp MultipleAligner.hpp MultiFamAligner.hpp
main.o_D: ScoreParamDefault.hpp ./alifold/Alifold.hpp
MSA.o_D: Util.hpp Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp UpTriMtx.hpp
MSA.o_D: Alpha.hpp Profile.hpp ProfileFreqs.hpp ProfileVectors.hpp
MSA.o_D: ScoreParam.hpp pscfg/PSCFG_Energy.hpp pscfg/PSCFG_Base.hpp Rect.hpp
MSA.o_D: SeqData.hpp EScript.hpp Weight.hpp MSA.hpp DPPath.hpp
MultiFamAligner.o_D: Util.hpp Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp
MultiFamAligner.o_D: UpTriMtx.hpp Alpha.hpp Rect.hpp SeqData.hpp EScript.hpp
MultiFamAligner.o_D: Profile.hpp ProfileFreqs.hpp ProfileVectors.hpp MSA.hpp
MultiFamAligner.o_D: ScoreParam.hpp pscfg/PSCFG_Energy.hpp
MultiFamAligner.o_D: pscfg/PSCFG_Base.hpp Dmtx.hpp Weight.hpp GuideTree.hpp
MultiFamAligner.o_D: Cluster.hpp Trapezoid.hpp DPPath.hpp DPRegion.hpp
MultiFamAligner.o_D: StripRegion.hpp StripRegionIterators.cpp DPDeck.hpp
MultiFamAligner.o_D: Aligner.hpp AlignProbData.hpp SparseProb.hpp
MultiFamAligner.o_D: PairProbData.hpp Job.hpp Scheduler.hpp JobRunner.hpp
MultiFamAligner.o_D: SeqFamAligner.hpp ProgressiveAligner.hpp
MultiFamAligner.o_D: MultipleAligner.hpp MultiFamAligner.hpp
MultipleAligner.o_D: Util.hpp Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp
MultipleAligner.o_D: UpTriMtx.hpp Alpha.hpp Rect.hpp SeqData.hpp EScript.hpp
MultipleAligner.o_D: Profile.hpp ProfileFreqs.hpp ProfileVectors.hpp MSA.hpp
MultipleAligner.o_D: ScoreParam.hpp pscfg/PSCFG_Energy.hpp
MultipleAligner.o_D: pscfg/PSCFG_Base.hpp Dmtx.hpp Weight.hpp GuideTree.hpp
MultipleAligner.o_D: Cluster.hpp Trapezoid.hpp DPPath.hpp DPRegion.hpp
MultipleAligner.o_D: StripRegion.hpp StripRegionIterators.cpp DPDeck.hpp
MultipleAligner.o_D: Aligner.hpp AlignProbData.hpp SparseProb.hpp
MultipleAligner.o_D: PairProbData.hpp Job.hpp Scheduler.hpp JobRunner.hpp
MultipleAligner.o_D: SeqFamAligner.hpp ProgressiveAligner.hpp
MultipleAligner.o_D: MultipleAligner.hpp
Opt.o_D: Util.hpp Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp UpTriMtx.hpp
Opt.o_D: Opt.hpp
Profile.o_D: Util.hpp Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp
Profile.o_D: UpTriMtx.hpp Rect.hpp Alpha.hpp EScript.hpp SeqData.hpp MSA.hpp
Profile.o_D: DPPath.hpp Weight.hpp Profile.hpp ProfileFreqs.hpp
Profile.o_D: ProfileVectors.hpp ScoreParam.hpp pscfg/PSCFG_Energy.hpp
Profile.o_D: pscfg/PSCFG_Base.hpp BasePairData.hpp SparseProb.hpp
ProfileFreqs.o_D: Util.hpp Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp
ProfileFreqs.o_D: UpTriMtx.hpp Rect.hpp Alpha.hpp Profile.hpp
ProfileFreqs.o_D: ProfileFreqs.hpp ProfileVectors.hpp ScoreParam.hpp
ProfileFreqs.o_D: pscfg/PSCFG_Energy.hpp pscfg/PSCFG_Base.hpp
ProfileVectors.o_D: Util.hpp Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp
ProfileVectors.o_D: UpTriMtx.hpp Rect.hpp Alpha.hpp EScript.hpp SeqData.hpp
ProfileVectors.o_D: MSA.hpp DPPath.hpp Weight.hpp Profile.hpp
ProfileVectors.o_D: ProfileFreqs.hpp ProfileVectors.hpp ScoreParam.hpp
ProfileVectors.o_D: pscfg/PSCFG_Energy.hpp pscfg/PSCFG_Base.hpp
ProgressiveAligner.o_D: Util.hpp Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp
ProgressiveAligner.o_D: UpTriMtx.hpp Alpha.hpp Rect.hpp SeqData.hpp
ProgressiveAligner.o_D: EScript.hpp Profile.hpp ProfileFreqs.hpp
ProgressiveAligner.o_D: ProfileVectors.hpp MSA.hpp ScoreParam.hpp
ProgressiveAligner.o_D: pscfg/PSCFG_Energy.hpp pscfg/PSCFG_Base.hpp Dmtx.hpp
ProgressiveAligner.o_D: Weight.hpp GuideTree.hpp Cluster.hpp Trapezoid.hpp
ProgressiveAligner.o_D: DPPath.hpp DPRegion.hpp StripRegion.hpp
ProgressiveAligner.o_D: StripRegionIterators.cpp DPDeck.hpp Aligner.hpp
ProgressiveAligner.o_D: AlignProbData.hpp SparseProb.hpp PairProbData.hpp
ProgressiveAligner.o_D: Job.hpp Scheduler.hpp JobRunner.hpp SeqFamAligner.hpp
ProgressiveAligner.o_D: ProgressiveAligner.hpp
Scheduler.o_D: Util.hpp Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp
Scheduler.o_D: UpTriMtx.hpp LoadStat.hpp Rect.hpp Trapezoid.hpp EScript.hpp
Scheduler.o_D: Alpha.hpp Profile.hpp ProfileFreqs.hpp ProfileVectors.hpp
Scheduler.o_D: ScoreParam.hpp pscfg/PSCFG_Energy.hpp pscfg/PSCFG_Base.hpp
Scheduler.o_D: Dmtx.hpp Weight.hpp SeqData.hpp GuideTree.hpp Cluster.hpp
Scheduler.o_D: BasePairData.hpp SparseProb.hpp DPPath.hpp MSA.hpp
Scheduler.o_D: DPRegion.hpp StripRegion.hpp StripRegionIterators.cpp
Scheduler.o_D: DPDeck.hpp Aligner.hpp AlignProbData.hpp PairProbData.hpp
Scheduler.o_D: Job.hpp JobRunner.hpp Scheduler.hpp
ScoreParam.o_D: ScoreParam.hpp Util.hpp Vector.hpp Array.hpp IntPairs.hpp
ScoreParam.o_D: Matrix.hpp UpTriMtx.hpp Alpha.hpp pscfg/PSCFG_Energy.hpp
ScoreParam.o_D: pscfg/PSCFG_Base.hpp Rect.hpp
SeqData.o_D: Util.hpp Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp
SeqData.o_D: UpTriMtx.hpp Alpha.hpp SeqData.hpp EScript.hpp
StripRegion.o_D: StripRegion.hpp Util.hpp Vector.hpp Array.hpp IntPairs.hpp
StripRegion.o_D: Matrix.hpp UpTriMtx.hpp Rect.hpp Trapezoid.hpp
StripRegion.o_D: StripRegionIterators.cpp
StripRegionIterators.o_D: StripRegion.hpp Util.hpp Vector.hpp Array.hpp
StripRegionIterators.o_D: IntPairs.hpp Matrix.hpp UpTriMtx.hpp Rect.hpp
StripRegionIterators.o_D: Trapezoid.hpp StripRegionIterators.cpp
TreeIterator.o_D: TreeIterator.hpp Util.hpp Vector.hpp Array.hpp IntPairs.hpp
TreeIterator.o_D: Matrix.hpp UpTriMtx.hpp TreeIterator.cpp
Util.o_D: Util.hpp Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp UpTriMtx.hpp
Weight.o_D: SeqData.hpp Util.hpp Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp
Weight.o_D: UpTriMtx.hpp EScript.hpp Weight.hpp TreeIterator.hpp
Weight.o_D: TreeIterator.cpp GuideTree.hpp
alifold/Alifold.o_D: ./alifold/Alifold.hpp DPDeck.hpp Util.hpp Vector.hpp
alifold/Alifold.o_D: Array.hpp IntPairs.hpp Matrix.hpp UpTriMtx.hpp
alifold/Alifold.o_D: Profile.hpp ProfileFreqs.hpp Alpha.hpp
alifold/Alifold.o_D: ProfileVectors.hpp DPPath.hpp Rect.hpp EScript.hpp
alifold/Alifold.o_D: ScoreParam.hpp pscfg/PSCFG_Energy.hpp
alifold/Alifold.o_D: pscfg/PSCFG_Base.hpp MSA.hpp SeqData.hpp
alifold/AlifoldEnergyParam.o_D: ./alifold/Alifold.hpp DPDeck.hpp Util.hpp
alifold/AlifoldEnergyParam.o_D: Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp
alifold/AlifoldEnergyParam.o_D: UpTriMtx.hpp Profile.hpp ProfileFreqs.hpp
alifold/AlifoldEnergyParam.o_D: Alpha.hpp ProfileVectors.hpp DPPath.hpp
alifold/AlifoldEnergyParam.o_D: Rect.hpp EScript.hpp ScoreParam.hpp
alifold/AlifoldEnergyParam.o_D: pscfg/PSCFG_Energy.hpp pscfg/PSCFG_Base.hpp
probcons/ProbCons.o_D: ./probcons/ProbCons.hpp DPDeck.hpp Util.hpp Vector.hpp
probcons/ProbCons.o_D: Array.hpp IntPairs.hpp Matrix.hpp UpTriMtx.hpp
probcons/ProbCons.o_D: Profile.hpp ProfileFreqs.hpp Alpha.hpp
probcons/ProbCons.o_D: ProfileVectors.hpp DPPath.hpp Rect.hpp EScript.hpp
probcons/ProbCons.o_D: ScoreParam.hpp pscfg/PSCFG_Energy.hpp
probcons/ProbCons.o_D: pscfg/PSCFG_Base.hpp MSA.hpp SeqData.hpp
pscfg/DPDeckPSCFG.o_D: pscfg/SkipSet.hpp Rect.hpp Util.hpp Vector.hpp
pscfg/DPDeckPSCFG.o_D: Array.hpp IntPairs.hpp Matrix.hpp UpTriMtx.hpp
pscfg/DPDeckPSCFG.o_D: DPRegion.hpp StripRegion.hpp Trapezoid.hpp
pscfg/DPDeckPSCFG.o_D: StripRegionIterators.cpp DPPath.hpp EScript.hpp
pscfg/DPDeckPSCFG.o_D: TreeIterator.hpp TreeIterator.cpp
pscfg/DPDeckPSCFG.o_D: ./pscfg/DPDeckPSCFG.hpp DPDeck.hpp DPScore.hpp
pscfg/DPDeckPSCFG.o_D: pscfg/PSCFG_Base.hpp ./pscfg/PSCFG_Energy.hpp
pscfg/DPDeckPSCFG.o_D: ./pscfg/PSCFGEnergyScoreManager.hpp Alpha.hpp
pscfg/DPDeckPSCFG.o_D: ScoreParam.hpp pscfg/PSCFG_Energy.hpp Profile.hpp
pscfg/DPDeckPSCFG.o_D: ProfileFreqs.hpp ProfileVectors.hpp
pscfg/DPDeckPSCFG.o_D: pscfg/DPDeckPSCFGNodes.hpp
pscfg/DPDeckPSCFG.o_D: pscfg/DPDeckPSCFGVectors.hpp
pscfg/DPDeckPSCFG.o_D: pscfg/DPDeckPSCFGDPRegion.hpp
pscfg/DPDeckPSCFG.o_D: pscfg/DPDeckPSCFGDPRegionRegion.hpp
pscfg/DPDeckPSCFG.o_D: pscfg/StripRegionSkip.hpp
pscfg/DPDeckPSCFG.o_D: pscfg/StripRegionSkipIterators.cpp
pscfg/DPDeckPSCFG.o_D: pscfg/DPDeckPSCFGDPRegionRegionIterators.cpp
pscfg/DPDeckPSCFG.o_D: pscfg/DPDeckPSCFGDPTask.hpp
pscfg/DPDeckPSCFG.o_D: pscfg/DPDeckPSCFGTBTree.hpp
pscfg/DPDeckPSCFGDPLocals.o_D: pscfg/DPDeckPSCFGDPLocals.hpp Trapezoid.hpp
pscfg/DPDeckPSCFGDPLocals.o_D: Rect.hpp Util.hpp Vector.hpp Array.hpp
pscfg/DPDeckPSCFGDPLocals.o_D: IntPairs.hpp Matrix.hpp UpTriMtx.hpp
pscfg/DPDeckPSCFGDPLocals.o_D: ./pscfg/DPDeckPSCFG.hpp DPDeck.hpp DPScore.hpp
pscfg/DPDeckPSCFGDPLocals.o_D: pscfg/PSCFG_Base.hpp ./pscfg/PSCFG_Energy.hpp
pscfg/DPDeckPSCFGDPLocals.o_D: ./pscfg/PSCFGEnergyScoreManager.hpp Alpha.hpp
pscfg/DPDeckPSCFGDPLocals.o_D: ScoreParam.hpp pscfg/PSCFG_Energy.hpp
pscfg/DPDeckPSCFGDPLocals.o_D: Profile.hpp ProfileFreqs.hpp
pscfg/DPDeckPSCFGDPLocals.o_D: ProfileVectors.hpp pscfg/DPDeckPSCFGNodes.hpp
pscfg/DPDeckPSCFGDPLocals.o_D: pscfg/DPDeckPSCFGDPRegion.hpp
pscfg/DPDeckPSCFGDPLocals.o_D: pscfg/SkipSet.hpp
pscfg/DPDeckPSCFGDPLocals.o_D: pscfg/DPDeckPSCFGDPRegionRegion.hpp
pscfg/DPDeckPSCFGDPLocals.o_D: StripRegion.hpp StripRegionIterators.cpp
pscfg/DPDeckPSCFGDPLocals.o_D: pscfg/StripRegionSkip.hpp
pscfg/DPDeckPSCFGDPLocals.o_D: pscfg/StripRegionSkipIterators.cpp
pscfg/DPDeckPSCFGDPLocals.o_D: pscfg/DPDeckPSCFGDPRegionRegionIterators.cpp
pscfg/DPDeckPSCFGDPLocals.o_D: pscfg/DPDeckPSCFGVectors.hpp
pscfg/DPDeckPSCFGDPLocals.o_D: pscfg/DPDeckPSCFGDPTask.hpp
pscfg/DPDeckPSCFGDPLocals.o_D: pscfg/DPDeckPSCFGTBTree.hpp DPPath.hpp
pscfg/DPDeckPSCFGDPLocals.o_D: EScript.hpp pscfg/DPDeckPSCFGDPTaskSubTask.cpp
pscfg/DPDeckPSCFGDPLocals.o_D: pscfg/DPDeckPSCFGDPTaskSubTask.hpp
pscfg/DPDeckPSCFGDPLocals.o_D: pscfg/DPDeckPSCFGDPLocals.cpp
pscfg/DPDeckPSCFGDPLocals.o_D: pscfg/DPDeckPSCFGDPLocalsTest.cpp
pscfg/DPDeckPSCFGDPRegion.o_D: pscfg/DPDeckPSCFGDPRegion.hpp Util.hpp
pscfg/DPDeckPSCFGDPRegion.o_D: Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp
pscfg/DPDeckPSCFGDPRegion.o_D: UpTriMtx.hpp Rect.hpp pscfg/SkipSet.hpp
pscfg/DPDeckPSCFGDPRegion.o_D: ./pscfg/DPDeckPSCFG.hpp DPDeck.hpp DPScore.hpp
pscfg/DPDeckPSCFGDPRegion.o_D: pscfg/PSCFG_Base.hpp ./pscfg/PSCFG_Energy.hpp
pscfg/DPDeckPSCFGDPRegion.o_D: ./pscfg/PSCFGEnergyScoreManager.hpp Alpha.hpp
pscfg/DPDeckPSCFGDPRegion.o_D: ScoreParam.hpp pscfg/PSCFG_Energy.hpp
pscfg/DPDeckPSCFGDPRegion.o_D: Profile.hpp ProfileFreqs.hpp
pscfg/DPDeckPSCFGDPRegion.o_D: ProfileVectors.hpp
pscfg/DPDeckPSCFGDPRegion.o_D: pscfg/DPDeckPSCFGDPRegionRegion.hpp
pscfg/DPDeckPSCFGDPRegion.o_D: StripRegion.hpp Trapezoid.hpp
pscfg/DPDeckPSCFGDPRegion.o_D: StripRegionIterators.cpp
pscfg/DPDeckPSCFGDPRegion.o_D: pscfg/StripRegionSkip.hpp
pscfg/DPDeckPSCFGDPRegion.o_D: pscfg/StripRegionSkipIterators.cpp
pscfg/DPDeckPSCFGDPRegion.o_D: pscfg/DPDeckPSCFGDPRegionRegionIterators.cpp
pscfg/DPDeckPSCFGDPRegionRegion.o_D: pscfg/DPDeckPSCFGDPRegionRegion.hpp
pscfg/DPDeckPSCFGDPRegionRegion.o_D: StripRegion.hpp Util.hpp Vector.hpp
pscfg/DPDeckPSCFGDPRegionRegion.o_D: Array.hpp IntPairs.hpp Matrix.hpp
pscfg/DPDeckPSCFGDPRegionRegion.o_D: UpTriMtx.hpp Rect.hpp Trapezoid.hpp
pscfg/DPDeckPSCFGDPRegionRegion.o_D: StripRegionIterators.cpp
pscfg/DPDeckPSCFGDPRegionRegion.o_D: pscfg/StripRegionSkip.hpp
pscfg/DPDeckPSCFGDPRegionRegion.o_D: pscfg/StripRegionSkipIterators.cpp
pscfg/DPDeckPSCFGDPRegionRegion.o_D: pscfg/SkipSet.hpp
pscfg/DPDeckPSCFGDPRegionRegion.o_D: pscfg/DPDeckPSCFGDPRegion.hpp
pscfg/DPDeckPSCFGDPRegionRegion.o_D: ./pscfg/DPDeckPSCFG.hpp DPDeck.hpp
pscfg/DPDeckPSCFGDPRegionRegion.o_D: DPScore.hpp pscfg/PSCFG_Base.hpp
pscfg/DPDeckPSCFGDPRegionRegion.o_D: ./pscfg/PSCFG_Energy.hpp
pscfg/DPDeckPSCFGDPRegionRegion.o_D: ./pscfg/PSCFGEnergyScoreManager.hpp
pscfg/DPDeckPSCFGDPRegionRegion.o_D: Alpha.hpp ScoreParam.hpp
pscfg/DPDeckPSCFGDPRegionRegion.o_D: pscfg/PSCFG_Energy.hpp Profile.hpp
pscfg/DPDeckPSCFGDPRegionRegion.o_D: ProfileFreqs.hpp ProfileVectors.hpp
pscfg/DPDeckPSCFGDPRegionRegion.o_D: pscfg/DPDeckPSCFGDPRegionRegionIterators.cpp
pscfg/DPDeckPSCFGDPTask.o_D: pscfg/DPDeckPSCFGVectors.hpp Util.hpp Vector.hpp
pscfg/DPDeckPSCFGDPTask.o_D: Array.hpp IntPairs.hpp Matrix.hpp UpTriMtx.hpp
pscfg/DPDeckPSCFGDPTask.o_D: ./pscfg/DPDeckPSCFG.hpp DPDeck.hpp DPScore.hpp
pscfg/DPDeckPSCFGDPTask.o_D: pscfg/PSCFG_Base.hpp Rect.hpp
pscfg/DPDeckPSCFGDPTask.o_D: ./pscfg/PSCFG_Energy.hpp
pscfg/DPDeckPSCFGDPTask.o_D: ./pscfg/PSCFGEnergyScoreManager.hpp Alpha.hpp
pscfg/DPDeckPSCFGDPTask.o_D: ScoreParam.hpp pscfg/PSCFG_Energy.hpp
pscfg/DPDeckPSCFGDPTask.o_D: Profile.hpp ProfileFreqs.hpp ProfileVectors.hpp
pscfg/DPDeckPSCFGDPTask.o_D: pscfg/DPDeckPSCFGNodes.hpp
pscfg/DPDeckPSCFGDPTask.o_D: pscfg/DPDeckPSCFGDPRegion.hpp pscfg/SkipSet.hpp
pscfg/DPDeckPSCFGDPTask.o_D: pscfg/DPDeckPSCFGDPRegionRegion.hpp
pscfg/DPDeckPSCFGDPTask.o_D: StripRegion.hpp Trapezoid.hpp
pscfg/DPDeckPSCFGDPTask.o_D: StripRegionIterators.cpp
pscfg/DPDeckPSCFGDPTask.o_D: pscfg/StripRegionSkip.hpp
pscfg/DPDeckPSCFGDPTask.o_D: pscfg/StripRegionSkipIterators.cpp
pscfg/DPDeckPSCFGDPTask.o_D: pscfg/DPDeckPSCFGDPRegionRegionIterators.cpp
pscfg/DPDeckPSCFGDPTask.o_D: pscfg/DPDeckPSCFGDPTask.hpp
pscfg/DPDeckPSCFGDPTask.o_D: pscfg/DPDeckPSCFGTBTree.hpp DPPath.hpp
pscfg/DPDeckPSCFGDPTask.o_D: EScript.hpp pscfg/DPDeckPSCFGDPTaskSubTask.hpp
pscfg/DPDeckPSCFGDPTask.o_D: pscfg/DPDeckPSCFGDPTaskSubTask.cpp
pscfg/DPDeckPSCFGDPTask.o_D: pscfg/DPDeckPSCFGDPLocals.cpp
pscfg/DPDeckPSCFGDPTask.o_D: pscfg/DPDeckPSCFGDPLocals.hpp
pscfg/DPDeckPSCFGDPTask.o_D: pscfg/DPDeckPSCFGDPLocalsTest.cpp
pscfg/DPDeckPSCFGDPTaskSubTask.o_D: pscfg/DPDeckPSCFGDPTaskSubTask.hpp
pscfg/DPDeckPSCFGDPTaskSubTask.o_D: ./pscfg/DPDeckPSCFG.hpp Util.hpp
pscfg/DPDeckPSCFGDPTaskSubTask.o_D: Vector.hpp Array.hpp IntPairs.hpp
pscfg/DPDeckPSCFGDPTaskSubTask.o_D: Matrix.hpp UpTriMtx.hpp DPDeck.hpp
pscfg/DPDeckPSCFGDPTaskSubTask.o_D: DPScore.hpp pscfg/PSCFG_Base.hpp Rect.hpp
pscfg/DPDeckPSCFGDPTaskSubTask.o_D: ./pscfg/PSCFG_Energy.hpp
pscfg/DPDeckPSCFGDPTaskSubTask.o_D: ./pscfg/PSCFGEnergyScoreManager.hpp
pscfg/DPDeckPSCFGDPTaskSubTask.o_D: Alpha.hpp ScoreParam.hpp
pscfg/DPDeckPSCFGDPTaskSubTask.o_D: pscfg/PSCFG_Energy.hpp Profile.hpp
pscfg/DPDeckPSCFGDPTaskSubTask.o_D: ProfileFreqs.hpp ProfileVectors.hpp
pscfg/DPDeckPSCFGDPTaskSubTask.o_D: pscfg/DPDeckPSCFGDPTask.hpp
pscfg/DPDeckPSCFGDPTaskSubTask.o_D: pscfg/DPDeckPSCFGDPRegion.hpp
pscfg/DPDeckPSCFGDPTaskSubTask.o_D: pscfg/SkipSet.hpp
pscfg/DPDeckPSCFGDPTaskSubTask.o_D: pscfg/DPDeckPSCFGDPRegionRegion.hpp
pscfg/DPDeckPSCFGDPTaskSubTask.o_D: StripRegion.hpp Trapezoid.hpp
pscfg/DPDeckPSCFGDPTaskSubTask.o_D: StripRegionIterators.cpp
pscfg/DPDeckPSCFGDPTaskSubTask.o_D: pscfg/StripRegionSkip.hpp
pscfg/DPDeckPSCFGDPTaskSubTask.o_D: pscfg/StripRegionSkipIterators.cpp
pscfg/DPDeckPSCFGDPTaskSubTask.o_D: pscfg/DPDeckPSCFGDPRegionRegionIterators.cpp
pscfg/DPDeckPSCFGDPTaskSubTask.o_D: pscfg/DPDeckPSCFGTBTree.hpp DPPath.hpp
pscfg/DPDeckPSCFGDPTaskSubTask.o_D: EScript.hpp pscfg/DPDeckPSCFGVectors.hpp
pscfg/DPDeckPSCFGDPTaskSubTask.o_D: pscfg/DPDeckPSCFGNodes.hpp
pscfg/DPDeckPSCFGDPTaskSubTask.o_D: pscfg/DPDeckPSCFGDPLocals.cpp
pscfg/DPDeckPSCFGNodes.o_D: Util.hpp Vector.hpp Array.hpp IntPairs.hpp
pscfg/DPDeckPSCFGNodes.o_D: Matrix.hpp UpTriMtx.hpp
pscfg/DPDeckPSCFGNodes.o_D: pscfg/DPDeckPSCFGNodes.hpp
pscfg/DPDeckPSCFGNodes.o_D: ./pscfg/DPDeckPSCFG.hpp DPDeck.hpp DPScore.hpp
pscfg/DPDeckPSCFGNodes.o_D: pscfg/PSCFG_Base.hpp Rect.hpp
pscfg/DPDeckPSCFGNodes.o_D: ./pscfg/PSCFG_Energy.hpp
pscfg/DPDeckPSCFGNodes.o_D: ./pscfg/PSCFGEnergyScoreManager.hpp Alpha.hpp
pscfg/DPDeckPSCFGNodes.o_D: ScoreParam.hpp pscfg/PSCFG_Energy.hpp Profile.hpp
pscfg/DPDeckPSCFGNodes.o_D: ProfileFreqs.hpp ProfileVectors.hpp
pscfg/PSCFGEnergyScoreManager.o_D: ./pscfg/PSCFGEnergyScoreManager.hpp
pscfg/PSCFGEnergyScoreManager.o_D: ./pscfg/PSCFG_Energy.hpp Alpha.hpp
pscfg/PSCFGEnergyScoreManager.o_D: Util.hpp Vector.hpp Array.hpp IntPairs.hpp
pscfg/PSCFGEnergyScoreManager.o_D: Matrix.hpp UpTriMtx.hpp DPScore.hpp
pscfg/PSCFGEnergyScoreManager.o_D: ScoreParam.hpp pscfg/PSCFG_Energy.hpp
pscfg/PSCFGEnergyScoreManager.o_D: pscfg/PSCFG_Base.hpp Rect.hpp Profile.hpp
pscfg/PSCFGEnergyScoreManager.o_D: ProfileFreqs.hpp ProfileVectors.hpp
pscfg/PSCFGEnergyScoreManager.o_D: DPDeck.hpp EScript.hpp Weight.hpp
pscfg/PSCFGEnergyScoreManager.o_D: SeqData.hpp MSA.hpp AlignProbData.hpp
pscfg/PSCFGEnergyScoreManager.o_D: SparseProb.hpp PairProbData.hpp DPPath.hpp
pscfg/DPDeckPSCFGTBTree.o_D: EScript.hpp Util.hpp Vector.hpp Array.hpp
pscfg/DPDeckPSCFGTBTree.o_D: IntPairs.hpp Matrix.hpp UpTriMtx.hpp
pscfg/DPDeckPSCFGTBTree.o_D: pscfg/DPDeckPSCFGTBTree.hpp DPPath.hpp Rect.hpp
pscfg/DPDeckPSCFGTBTree.o_D: ./pscfg/DPDeckPSCFG.hpp DPDeck.hpp DPScore.hpp
pscfg/DPDeckPSCFGTBTree.o_D: pscfg/PSCFG_Base.hpp ./pscfg/PSCFG_Energy.hpp
pscfg/DPDeckPSCFGTBTree.o_D: ./pscfg/PSCFGEnergyScoreManager.hpp Alpha.hpp
pscfg/DPDeckPSCFGTBTree.o_D: ScoreParam.hpp pscfg/PSCFG_Energy.hpp
pscfg/DPDeckPSCFGTBTree.o_D: Profile.hpp ProfileFreqs.hpp ProfileVectors.hpp
pscfg/DPDeckPSCFGTBTree.o_D: TreeIterator.hpp TreeIterator.cpp
pscfg/DPDeckPSCFGVectors.o_D: pscfg/DPDeckPSCFGVectors.hpp Util.hpp
pscfg/DPDeckPSCFGVectors.o_D: Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp
pscfg/DPDeckPSCFGVectors.o_D: UpTriMtx.hpp ./pscfg/DPDeckPSCFG.hpp DPDeck.hpp
pscfg/DPDeckPSCFGVectors.o_D: DPScore.hpp pscfg/PSCFG_Base.hpp Rect.hpp
pscfg/DPDeckPSCFGVectors.o_D: ./pscfg/PSCFG_Energy.hpp
pscfg/DPDeckPSCFGVectors.o_D: ./pscfg/PSCFGEnergyScoreManager.hpp Alpha.hpp
pscfg/DPDeckPSCFGVectors.o_D: ScoreParam.hpp pscfg/PSCFG_Energy.hpp
pscfg/DPDeckPSCFGVectors.o_D: Profile.hpp ProfileFreqs.hpp ProfileVectors.hpp
pscfg/DPDeckPSCFGVectors.o_D: pscfg/DPDeckPSCFGNodes.hpp
pscfg/DPDeckPSCFGVectors.o_D: pscfg/DPDeckPSCFGDPRegion.hpp pscfg/SkipSet.hpp
pscfg/DPDeckPSCFGVectors.o_D: pscfg/DPDeckPSCFGDPRegionRegion.hpp
pscfg/DPDeckPSCFGVectors.o_D: StripRegion.hpp Trapezoid.hpp
pscfg/DPDeckPSCFGVectors.o_D: StripRegionIterators.cpp
pscfg/DPDeckPSCFGVectors.o_D: pscfg/StripRegionSkip.hpp
pscfg/DPDeckPSCFGVectors.o_D: pscfg/StripRegionSkipIterators.cpp
pscfg/DPDeckPSCFGVectors.o_D: pscfg/DPDeckPSCFGDPRegionRegionIterators.cpp
pscfg/SkipSet.o_D: pscfg/SkipSet.hpp Rect.hpp Util.hpp Vector.hpp Array.hpp
pscfg/SkipSet.o_D: IntPairs.hpp Matrix.hpp UpTriMtx.hpp DPPath.hpp
pscfg/SkipSet.o_D: EScript.hpp
pscfg/StripRegionSkip.o_D: pscfg/StripRegionSkip.hpp StripRegion.hpp Util.hpp
pscfg/StripRegionSkip.o_D: Vector.hpp Array.hpp IntPairs.hpp Matrix.hpp
pscfg/StripRegionSkip.o_D: UpTriMtx.hpp Rect.hpp Trapezoid.hpp
pscfg/StripRegionSkip.o_D: StripRegionIterators.cpp
pscfg/StripRegionSkip.o_D: pscfg/StripRegionSkipIterators.cpp
pscfg/StripRegionSkip.o_D: pscfg/SkipSet.hpp
