FR010344
- Summary
- Sequence
- Secondary Structure
| Summary | |
|---|---|
| ID | FR010344 |
| Description | C/D box small nucleolar RNA (snoRNA) HBII-85-16 / SNORD116-16 |
| Accession | NR_003330 |
| Sequence Ontology | C_D_box_snoRNA |
| Organism | |
| Genome Mapping | |
| human(hg18) 1 region | chr15:22879007-22879100(+)  |
| Cross Reference | |
| Gene Association / Sense Overlap / Intron | |
| human(hg18) | DKFZp686M12165 (uc001yxh.1 , uc001yxm.1 , uc001yxn.2 , uc001yxy.2 ) |
| Gene Association / Sense Overlap / 3'UTR | |
| human(hg18) | NR_003331 (uc001yya.1 ) |
| Sequence Similarity | |
| MicroArray / Affymetrix GeneChip Exon Array / hg18 | ||
|---|---|---|
| Probe | Transcript Cluster | Probe Locus |
| 1834450 | 3584443 |
chr15:22879019-22879043(+) |
| 2822765 | 3584443 |
chr15:22879020-22879044(+) |
| 2131614 | 3584443 |
chr15:22879021-22879045(+) |
| 5083514 | 3584443 |
chr15:22879022-22879046(+) |
| Reference | |
|---|---|
|
snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs.
Lestrade L. and Weber MJ. Nucleic Acids Res 34 (Database issue), D158-62 (2006)
Exclusion of the C/D box snoRNA gene cluster HBII-52 from a major role in Prader-Willi syndrome.
Runte M.,Varon R.,Horn D.,Horsthemke B. and Buiting K. Hum Genet 116 (3), 228-30 (2005)
RNAdb--a comprehensive mammalian noncoding RNA database.
Pang KC.,Stephen S.,Engström PG.,Tajul-Arifin K.,Chen W.,Wahlestedt C.,Lenhard B.,Hayashizaki Y. and Mattick JS. Nucleic Acids Res 33 (Database issue), D125-30 (2005)
Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region.
Cavaillé J.,Seitz H.,Paulsen M.,Ferguson-Smith AC. and Bachellerie JP. Hum Mol Genet 11 (13), 1527-38 (2002)
The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A.
Runte M.,Hüttenhofer A.,Gross S.,Kiefmann M.,Horsthemke B. and Buiting K. Hum Mol Genet 10 (23), 2687-700 (2001)
Large-scale evaluation of imprinting status in the Prader-Willi syndrome region: an imprinted direct repeat cluster resembling small nucleolar RNA genes.
Meguro M.,Mitsuya K.,Nomura N.,Kohda M.,Kashiwagi A.,Nishigaki R.,Yoshioka H.,Nakao M.,Oishi M. and Oshimura M. Hum Mol Genet 10 (4), 383-94 (2001)
Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization.
Cavaillé J.,Buiting K.,Kiefmann M.,Lalande M.,Brannan CI.,Horsthemke B.,Bachellerie JP.,Brosius J. and Hüttenhofer A. Proc Natl Acad Sci U S A 97 (26), 14311-6 (2000)
Small evolutionarily conserved RNA, resembling C/D box small nucleolar RNA, is transcribed from PWCR1, a novel imprinted gene in the Prader-Willi deletion region, which Is highly expressed in brain.
de los Santos T.,Schweizer J.,Rees CA. and Francke U. Am J Hum Genet 67 (5), 1067-82 (2000) | |
