fRNAdb - Detail Page [FR036678]

FR036678

Summary
Sequence
Secondary Structure

Evidence Mapping [blat]

blat with identity=99, coverage=90 and no-repeat

Summary
ID	FR036678
Description	7SK RNA
Accession	AC098800 , AC104405
Sequence Ontology	snRNA
Organism
Homo sapiens	human , man
Genome Mapping
human(hg18) 1 region	chr2:132997660-132997979(+)
Cross Reference
Rfam v8.1	RF00100
Gene Association / Sense Overlap / Intron
human(hg18)	GPR39 (uc002ttl.1 )
Sequence Similarity

OMIM
ID	Title	Locus
602886	G PROTEIN-COUPLED RECEPTOR 39; GPR39	2q21-q22(chr2:129600001-148400000)

MicroArray / Affymetrix GeneChip Exon Array / hg18
Probe	Transcript Cluster	Probe Locus
999405	2506570	chr2:132997815-132997839(+)
1188223	2506570	chr2:132997888-132997912(+)
4869241	2506570	chr2:132997896-132997920(+)
2877570	2506570	chr2:132997903-132997927(+)

Reference
Transcription: surprising role for an elusive small nuclear RNA. Blencowe BJ. Curr Biol 12 (4), R147-9 (2002) Structural analyses of the 7SK ribonucleoprotein (RNP), the most abundant human small RNP of unknown function. Wassarman DA. and Steitz JA. Mol Cell Biol 11 (7), 3432-45 (1991)

Evidence :

Evidence Secondary Structure [putative(Rfam)]

Putative secondary structure predicted by Rfam.

Click here to view the PDF file.

0         1         2         3         4         5         6
GGAUAUGAGGGUGAUGUGGCUGCAACAUCUGUCACCCCACUGAUUGCCAGGGUUGAUUUGGCUGAUCUGG
(((...(((((.((...((....((((((((((.(((((..(((((((...........))).)))))))

7         8         9         0         1         2         3
CUGGCUAGACGGGUGUCCCUUUCCUCCCUCUGCUCCAUGUGCAUCCCUCCUGAAGCUGCAUGCUCCGCUG
..))...)))))))))).)).))..)))))...))).......((((((((((.((.....))))))(((

4         5         6         7         8         9         0
AAGAGGAUGACCUUCCCCAACAGAGGAGAAAUGGUCUUUGGUCAAGGGUAUAUGAGUAGCCGUGCUCCCC
....(((......))).)))..)))).)).............................(((...((...(

1         2         3         4         5         6         7
UGCUAGAACCUCCACAAACAAGCUCUCAAGAUUAAAUGAGGCGUGUGUGGAGUGCUCAGAACCUGGGGGA
(((......((((.....(.((.............))).))))...)))))))))...............

8         9         0         1
AGAGUUUGGACUAUGCUCAGAAUUUUCAGAGCAGCAAUUC
.......(((.((((((((((....))))))))))..)))

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