FR047590

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  • Summary
  • Sequence
  • Secondary Structure
Evidence Mapping [blat]
blat with identity=99, coverage=90 and no-repeat
Summary
ID FR047590
Description small cajal body specific RNA (scaRNA) scaRNA17 / scaRNA18 / U91
Accession AC090227 , AY077741
Sequence Ontology snoRNA
Organism
Homo sapiens human , man
Genome Mapping
human(hg18)           1 region chr18:45594729-45594811(+) 
Cross Reference
Rfam v8.1 RF00283
NONCODE v1.0 u3480
snoRNA-LBME-db release3 U91
RNAdb v2.0 SNO1222
Gene Association / Sense Overlap / 3'UTR
human(hg18) NR_003003 (uc002ldy.1 )
Sequence Similarity
  

MicroArray / Affymetrix GeneChip Exon Array / hg18
ProbeTranscript ClusterProbe Locus
6291273 3787937  chr18:45594729-45594753(+) 
5600024 3787937  chr18:45594735-45594759(+) 
2681811 3787937  chr18:45594740-45594764(+) 
4307320 3787937  chr18:45594744-45594768(+) 

MicroArray / Invitrogen Ncode Noncoding RNA Array / hg18
ProbeTarget TranscriptProbe Locus
IVGNh31303 UC002LDY  chr18:45594747-45594807(+) 

Reference
snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs.
Lestrade L. and Weber MJ.
Nucleic Acids Res 34 (Database issue), D158-62 (2006)
RNAdb--a comprehensive mammalian noncoding RNA database.
Pang KC.,Stephen S.,Engström PG.,Tajul-Arifin K.,Chen W.,Wahlestedt C.,Lenhard B.,Hayashizaki Y. and Mattick JS.
Nucleic Acids Res 33 (Database issue), D125-30 (2005)
NONCODE: an integrated knowledge database of non-coding RNAs.
Liu C.,Bai B.,Skogerbø G.,Cai L.,Deng W.,Zhang Y.,Bu D.,Zhao Y. and Chen R.
Nucleic Acids Res 33 (Database issue), D112-5 (2005)
Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa.
Tycowski KT.,Aab A. and Steitz JA.
Curr Biol 14 (22), 1985-95 (2004)
Purified box C/D snoRNPs are able to reproduce site-specific 2'-O-methylation of target RNA in vitro.
Galardi S.,Fatica A.,Bachi A.,Scaloni A.,Presutti C. and Bozzoni I.
Mol Cell Biol 22 (19), 6663-8 (2002)
Cajal body-specific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs.
Darzacq X.,Jády BE.,Verheggen C.,Kiss AM.,Bertrand E. and Kiss T.
EMBO J 21 (11), 2746-56 (2002)
RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse.
Hüttenhofer A.,Kiefmann M.,Meier-Ewert S.,O'Brien J.,Lehrach H.,Bachellerie JP. and Brosius J.
EMBO J 20 (11), 2943-53 (2001)
4.5S RNA is encoded by hundreds of tandemly linked genes, has a short half-life, and is hydrogen bonded in vivo to poly(A)-terminated RNAs in the cytoplasm of cultured mouse cells.
Schoeniger LO. and Jelinek WR.
Mol Cell Biol 6 (5), 1508-19 (1986)

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