fRNAdb - Detail Page [FR084914]

FR084914

Summary
Sequence
Secondary Structure

Evidence Mapping [blat]

blat with identity=99, coverage=90 and no-repeat

Summary
ID	FR084914
Description	precursor micro RNA (miRNA) mir-1 / mir-1-2
Accession
Sequence Ontology	pre_miRNA
Organism
Homo sapiens	human , man
Pan paniscus	bonobo , pygmy chimpanzee
Genome Mapping
human(hg18) 1 region	chr18:17662963-17663047(-)
Cross Reference
miRBase v9.2	MI0000437 MI0002930
Gene Association / Sense Overlap / 5'UTR
human(hg18)	AF086463 (uc002ktr.2 ), BX648566 (uc002kts.2 )
Gene Association / AntiSense Overlap / Intron
human(hg18)	MIB1 (uc002ktp.1 , uc002ktq.1 )
Sequence Similarity

OMIM
ID	Title	Locus
608677	MINDBOMB, DROSOPHILA, HOMOLOG OF, 1; MIB1 MIB DAPK-INTERACTING PROTEIN 1; DIP1 KIAA1323

MicroArray / Affymetrix GeneChip Exon Array / hg18
Probe	Transcript Cluster	Probe Locus
336677	3800898	chr18:17662991-17663015(-)
3741617	3800898	chr18:17662993-17663017(-)
140230	3800898	chr18:17663006-17663030(-)
176234	3800898	chr18:17663012-17663036(-)

Reference
Phylogenetic shadowing and computational identification of human microRNA genes. Berezikov E.,Guryev V.,van de Belt J.,Wienholds E.,Plasterk RH. and Cuppen E. Cell 120 (1), 21-4 (2005) Identification of tissue-specific microRNAs from mouse. Lagos-Quintana M.,Rauhut R.,Yalcin A.,Meyer J.,Lendeckel W. and Tuschl T. Curr Biol 12 (9), 735-9 (2002)

Evidence :

Evidence Secondary Structure [putative(miRBase)]

Putative secondary structure predicted by miRBase.

Click here to view the PDF file.

0         1         2         3         4         5         6
ACCUACUCAGAGUACAUACUUCUUUAUGUACCCAUAUGAACAUACAAUGCUAUGGAAUGUAAAGAAGUAU
.((((((.(((((((((((((((((((((..(((((..............))))).))))))))))))))

7         8
GUAUUUUUGGUAGGC
))))))).)))))).

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