FR089560

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  • Summary
  • Sequence
  • Secondary Structure

Evidence Secondary Structure [putative(CentroidAlign)]
Putative secondary structure predicted by CentroidAlign.

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offset      0         1         2         3         4         5         6
FR089560    GGCUCUGUCCUCCUGGACAUG-CCGAGAGCCUGC----CUG-AUCCUGGGU---------------CCUG
panTro2     GGCUCUGUCCUCCUGGACAUG-CCGAGAGCCUGC----CUG-AUCCUGGGU---------------CAUG
gorGor1     GGCUCUGUCCUCCUGGACAUG-CCGAGAGCCUGC----CUG-AUCCUGGGU---------------CCUG
ponAbe2     GGUUCUGUCCUCCUGGACAUG-CCGAGAGCCUGA--------UCCC-GGGU---------------CCUG
rheMac2     GGCUCUGUCCUCCUGGACACG-CCGAGAGCCUGA--------UCCC-GGGU---------------CCUA
calJac1     GGCUCUGUCCUCUUGGACAGG-CCGAGAGCCCGA--------UCCC--GGU---------------CCUG
otoGar1     GGCGCUGUCCUCCUGGACAUG-CCGAAAUACAGA--------UGCCGAGGA---------------CCUU
tupBel1     GGGCCCU---CUCCGGACUGG--UGAGAGGACGA--------AGCCCGGG--------------G-CCUC
mm9         GGCUCCGUCCUCCUGGACAUG-CCGAAAGGCCAG--------UGCUGGGGA---------------CCUU
rn4         GGCUCUGUCCUACUGGACUCG-CCGAAAGACCAU--------UGCUGGGGA---------------CCUU
dipOrd1     GGCUCCGCUCCUCCGGGCGCG-CC----------------------------------------------
cavPor3     GGUUCCGUCCUCCUGGACACG-AUGCAG-AC-GA--------UCCCGGGG----------------AUGU
speTri1     GGCUCUGUCCUCCUGGACAUG-CCGAAGGACCGA--------UGCU-GGGA-------------C-ACUU
ochPri2     GGCCGGGACCUCCUGGAAACUGCAGCGAUGCCUC--------GGCUGGA------------G--A-CGUG
turTru1     GGCUCCGUCCUCCUGGACAUG-CCGCAAGAGAGA--------UGCCGGG-A---------------CCUU
bosTau4     GGCUCCGUCCUACUGGACCUG-CCGCGAGAUAGA--------UACCCGA------------G--A-CGGU
equCab2     GGCUCUGUCCUCCUGGACAUG-CUGAAAGGCGGACGC-CAGACGCCGAGGA---------------CCUU
felCat3     GGCUCCGUCCUCCUGGCCAUG-CCGAUG-ACAGA--------CGCCGGGGA---------------CCUU
canFam2     GGCUCUGUCCUCCUGGACACG-CCGAUG-ACAGC--------CGCCGAG------------G--A-CCUC
myoLuc1     GCCGCUGUCCUCCUGGACAUG-CCGAAGGACGAA-GGACAACCGCC-GGGA---------------CCUU
pteVam1     GGCUCUGUCC---CGGACACG-CCGAAGGACAGA--------C---------------------G-CCUU
loxAfr2     GGCUCUGUCCUCCUGGACACC-CAGGAA---AGA-GC-----CGCC-AGGACC--------U--A-CCUU
echTel1     GGCUGUGUCCUCCUGGACACG-CCAGG--------------------GAGACCGCCGCAGGACCGACCUU
dasNov2     GUCCCUGUCCUCCUAGACCAG-CAGAAA----GA--------UGCCGGG------------C--A-CCUU
SS anno     (((..(((((....))))).).))..................(((..((((...............((..
pair symbol abc  defgh    hgfed c ba                  abc  defg               hi  

offset      7         8         9         0
FR089560    CUGCUGGAGGCGG-CCACU----UCGCC-UGGUCC-CCGAGCGUC
panTro2     CUGAUUGAGGCGG-CCACU----UCGCC-UGGUCC-CCGAGCGUC
gorGor1     CUGCUGGAGGCGGACCACU----UCGCC-UGGUCC-CCGAGCGUC
ponAbe2     CUGCUGGAGGCGA-CCACU----UCGCC-UGGUCC-CCGAGCGUC
rheMac2     CUGCUGGAGGCGG-CCACU----UCGCC-UGGUCC-CCGAGUGUC
calJac1     CUGCUGGAGGCGG-CCACU----UCGUC-UGGUGC-CCAAGCGUC
otoGar1     CUCCCGAAGGCGG-CCACU----UCGCC-AGGUCC-CCGAGCAUC
tupBel1     CUGAUCGAGU--C-CCAUU----UGCCC-UGUUCU-CCUAGGCUA
mm9         CUCCCAAAGCCAG-CCCCU----UAGCC-UGGUCC-CC-AGCAUC
rn4         CUCCCAAAGGCAG-CCCCUUACUCAGCC-UGGUCC--CCAGCAUC
dipOrd1     ----AGGCUGCGG-CACCC----GUGCC-CGGCCC-GCGCGCCGC
cavPor3     CUCCCGAAGGUGG-CCUCUGU-CUGCCU-UGGUCC-CCGAGCAUC
speTri1     CUCCUGAAGGCGG-CCACU----UUGCC-UGGUCC-CCAAGCAUG
ochPri2     UUCGUGGCAGCGG-CCGCU----UUGCCCUGGUUC--------UC
turTru1     CUCCUGAAGGCGG-CCACU----UCGCC-UUGUCC-CCGAGCAUC
bosTau4     CUCCUGAAGGCGA-CCACU----UCGCC-UGGUCC-CCGAGCGUC
equCab2     CUCCUGAAGGCGG-CCACC----UCGCC-UGGUCC-CCGAGGGUC
felCat3     CUCCUGCAGGCGG-CCACC----UCGCC-UGGUCC-CCGAGUGUC
canFam2     CUCCCGAAGGCGG-CCACC----UCGCC-UGGUCCCCCGAGCGUC
myoLuc1     CUCUGAAAGGUGG-CCACC----UCGCC-UGGUCC--CAAGCAUC
pteVam1     CUCCUGAAGGUGG-CCACC----UCGCC-UGUUCC-CCCAGCGUC
loxAfr2     CUCCUGAAGGCGG-CCACC----UCGCC-UGGUCC-UCUAGCACC
echTel1     CUCCUGAAGGCGG-CCACC----UCGCC-UGGUCU-CCGAGCGCC
dasNov2     UUCCCGAAAGCCG-CCGCU----CGCCC-GGCCCC-CCGAGCGUC
SS anno     .......(((((............)))).)))))).)...)))..
pair symbol        jklmn            nmlk jihgfe d   cba  

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