FR116323

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  • Summary
  • Sequence
  • Secondary Structure
Evidence Mapping [blat]
blat with identity=99, coverage=90 and no-repeat
Evidence Sequence Similarity [highly similar]
Almost same sequences with one mismatch or one gap
Summary
ID FR116323
Description C/D box guide small nucleolar RNA (snoRNA) HBII-52 / SNORD116
Accession AC009696 , AC124312 , AF241255 , AF250841
Sequence Ontology C_D_box_snoRNA
Organism
Homo sapiens human , man
Genome Mapping
human(hg18)           1 region chr15:22885044-22885135(+) 
Cross Reference
Rfam v8.1 RF00108
NONCODE v1.0 u1077
Gene Association / Sense Overlap / Intron
human(hg18) DKFZp686M12165 (uc001yxh.1 , uc001yxm.1 , uc001yxn.2 , uc001yxy.2 , uc001yyb.2 , uc001yyd.2 )
Gene Association / Sense Overlap / 3'UTR
human(hg18) NR_003335 (uc001yyf.1 )
Sequence Similarity
highly similar FR325019   C/D box guide small nucleolar RNA (snoRNA) HBII-52 / SNORD116

MicroArray / Affymetrix GeneChip Exon Array / hg18
ProbeTranscript ClusterProbe Locus
4008261 3584443  chr15:22885093-22885117(+) 
2193522 3584443  chr15:22885096-22885120(+) 
2336724 3584443  chr15:22885101-22885125(+) 
1112978 3584443  chr15:22885107-22885131(+) 

Reference
NONCODE: an integrated knowledge database of non-coding RNAs.
Liu C.,Bai B.,Skogerbø G.,Cai L.,Deng W.,Zhang Y.,Bu D.,Zhao Y. and Chen R.
Nucleic Acids Res 33 (Database issue), D112-5 (2005)
Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization.
Cavaillé J.,Buiting K.,Kiefmann M.,Lalande M.,Brannan CI.,Horsthemke B.,Bachellerie JP.,Brosius J. and Hüttenhofer A.
Proc Natl Acad Sci U S A 97 (26), 14311-6 (2000)
Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes.
Gaspin C.,Cavaillé J.,Erauso G. and Bachellerie JP.
J Mol Biol 297 (4), 895-906 (2000)
The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions.
Balakin AG.,Smith L. and Fournier MJ.
Cell 86 (5), 823-34 (1996)

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