fRNAdb - Detail Page [FR116323]

FR116323

Summary
Sequence
Secondary Structure

Evidence Mapping [blat]

blat with identity=99, coverage=90 and no-repeat

Evidence Sequence Similarity [highly similar]

Almost same sequences with one mismatch or one gap

Summary
ID	FR116323
Description	C/D box guide small nucleolar RNA (snoRNA) HBII-52 / SNORD116
Accession	AC009696 , AC124312 , AF241255 , AF250841
Sequence Ontology	C_D_box_snoRNA
Organism
Homo sapiens	human , man
Genome Mapping
human(hg18) 1 region	chr15:22885044-22885135(+)
Cross Reference
Rfam v8.1	RF00108
NONCODE v1.0	u1077
Gene Association / Sense Overlap / Intron
human(hg18)	DKFZp686M12165 (uc001yxh.1 , uc001yxm.1 , uc001yxn.2 , uc001yxy.2 , uc001yyb.2 , uc001yyd.2 )
Gene Association / Sense Overlap / 3'UTR
human(hg18)	NR_003335 (uc001yyf.1 )
Sequence Similarity
highly similar	FR325019 C/D box guide small nucleolar RNA (snoRNA) HBII-52 / SNORD116

MicroArray / Affymetrix GeneChip Exon Array / hg18
Probe	Transcript Cluster	Probe Locus
4008261	3584443	chr15:22885093-22885117(+)
2193522	3584443	chr15:22885096-22885120(+)
2336724	3584443	chr15:22885101-22885125(+)
1112978	3584443	chr15:22885107-22885131(+)

Reference
NONCODE: an integrated knowledge database of non-coding RNAs. Liu C.,Bai B.,Skogerbø G.,Cai L.,Deng W.,Zhang Y.,Bu D.,Zhao Y. and Chen R. Nucleic Acids Res 33 (Database issue), D112-5 (2005) Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. Cavaillé J.,Buiting K.,Kiefmann M.,Lalande M.,Brannan CI.,Horsthemke B.,Bachellerie JP.,Brosius J. and Hüttenhofer A. Proc Natl Acad Sci U S A 97 (26), 14311-6 (2000) Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes. Gaspin C.,Cavaillé J.,Erauso G. and Bachellerie JP. J Mol Biol 297 (4), 895-906 (2000) The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. Balakin AG.,Smith L. and Fournier MJ. Cell 86 (5), 823-34 (1996)

Reference

NONCODE: an integrated knowledge database of non-coding RNAs.
Liu C.,Bai B.,Skogerbø G.,Cai L.,Deng W.,Zhang Y.,Bu D.,Zhao Y. and Chen R.
Nucleic Acids Res 33 (Database issue), D112-5 (2005)

Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization.
Cavaillé J.,Buiting K.,Kiefmann M.,Lalande M.,Brannan CI.,Horsthemke B.,Bachellerie JP.,Brosius J. and Hüttenhofer A.
Proc Natl Acad Sci U S A 97 (26), 14311-6 (2000)

Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes.
Gaspin C.,Cavaillé J.,Erauso G. and Bachellerie JP.
J Mol Biol 297 (4), 895-906 (2000)

The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions.
Balakin AG.,Smith L. and Fournier MJ.
Cell 86 (5), 823-34 (1996)

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