FR118343

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  • Summary
  • Sequence
  • Secondary Structure
Evidence Mapping [blat]
blat with identity=99, coverage=90 and no-repeat
Evidence Sequence Similarity [highly similar]
Almost same sequences with one mismatch or one gap
Summary
ID FR118343
Description C/D box small nucleolar RNA (snoRNA)
Accession AF250841
Sequence Ontology C_D_box_snoRNA
Organism
Homo sapiens human , man
Genome Mapping
human(hg18)           1 region chr15:23025207-23025287(+) 
Cross Reference
NONCODE v1.0 u1089
Gene Association / Sense Overlap / Intron
human(hg18) NR_003313 (uc001yzq.1 ), AF400501 (uc001yzw.1 )
Gene Association / Sense Overlap / 3'UTR
human(hg18) NR_003347 (uc001zaa.1 )
Sequence Similarity
highly similar FR023544   C/D box guide small nucleolar RNA (snoRNA) HBII-52-32 / SNORD115-32

MicroArray / Affymetrix GeneChip Exon Array / hg18
ProbeTranscript ClusterProbe Locus
5543944 3584740  chr15:23025217-23025241(+) 
6355265 3584740  chr15:23025226-23025250(+) 
508542 3584740  chr15:23025258-23025282(+) 
5623618 3584740  chr15:23025263-23025287(+) 

MicroArray / Invitrogen Ncode Noncoding RNA Array / hg18
ProbeTarget TranscriptProbe Locus
IVGNh29389 UC001ZAA  chr15:23025218-23025278(+) 

Reference
NONCODE: an integrated knowledge database of non-coding RNAs.
Liu C.,Bai B.,Skogerbø G.,Cai L.,Deng W.,Zhang Y.,Bu D.,Zhao Y. and Chen R.
Nucleic Acids Res 33 (Database issue), D112-5 (2005)
Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes.
Gaspin C.,Cavaillé J.,Erauso G. and Bachellerie JP.
J Mol Biol 297 (4), 895-906 (2000)
The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions.
Balakin AG.,Smith L. and Fournier MJ.
Cell 86 (5), 823-34 (1996)

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