offset      0         1         2         3         4         5         6
FR133655    UGGCAACUGUGAUGAAA---GAUUUGGU--CUGUAU--GU--AAUAG---AU-U-UUAUUACUAAAU---
panTro2     UGGCAACUGUGAUGAAA---GAUUUGGU--CUGUAU--GU--AAUAU---AU-U-UUAUUACUAAAU---
gorGor1     UGGCAACUGUGAUGAAA---GAUUUGGU--CUGUAU--GU--AAUAU---AU-U-UUAUUACUAAAU---
ponAbe2     UGGCAACUGUGAUGAAA---GAUUUGGU--CUGUAU--GU--AAUAU---AU-U-UUAUUACUAAAU---
rheMac2     UGGCAACUGUGAUGAAA---GAUUUGGU--CUGUAU--GU--AAUAU---GU-U-UUAUUACUAAAU---
calJac1     UGGCAACUGUGAUGAAA---GAUUUGGU--CUGCAU--GU--AAUGU---AU-U-UUAUUACUAAAU---
tarSyr1     UGGCAACUGUGAUGAAA---GAUUUAGU--CUGUAC--GU--AAUAU---ACUU-UUAUUACUAAAU---
micMur1     UGGCAACUGUGAUGAAA---GAUUUGGU--CUGUAU--GU--AAUAU---AU-U-UUAUUACUAAAU---
tupBel1     UGGCAACUGUGAUGAAA---GAUUUGGU--CUGUAU--GU--GAUAU---AU---UUAUUACUAAAU---
mm9         UGGCAACUGUGAUGAAA---GAUUUGGU--CUAUACA-GU--AAUAU---AU---UUAUUACUACAU---
rn4         UGGCAACUGUGAUGAAA---GAUUUGGU--CUAUACA-GU--AAUAU---AU---UUAUUACU-AAU---
dipOrd1     GGGCAACUAUGAUGACA---AUUUCAUU--CUGUAU--GU--AAUAU---AU-U-UUGUUACUAAAU---
cavPor3     UGGCAACUAUGAUGAAA---AAUUUGAU--CUGAAU--GU--AAUAC---AU-U-UUAUUACUAAAU---
oryCun1     UGGCAACUAUGAUGAAA---AAUUUGGU--CUGUAU--GU--AAUAU---GU-U-UUAUU---ACAU---
ochPri2     UGGCAACUAUGAUGAAA---AACUUGAU--CUGUAU--GU--AAUA-----U-U-UUAUUACUAAAU---
turTru1     UGGCAACUAUGAUGAAA---GGUUUGGU--CUGUAU--GU--AAUAU---AU-U-UCAUUACUAAAU---
bosTau4     UGGCAACUAUGAUGAAA---GAUUUGGU--CUGUAU--GU--AAUAU---AU-U-UUAUUACUAAGU---
vicPac1     UGGCAACUAUGAUGAAA---GAUUUGGU--CUGUAU--GU--AAUAU---AU-U-UUAAUACU-AAU---
equCab2     UGGCAACUAUGAUGAAA---GAUUCAGU--CUGUAU--GU--AAUG-----U-C-UUGUUACUAAAU---
canFam2     UGGCAACUAUGAUGAAA---GAUUUGCU--CUGUAU--GU--AAUAU---AU-U-UUAUUACUACAU---
myoLuc1     UGGCAACUAUGAUGAAA---GAUUUGGU--CUGUAU--GU--AAUAU---AU-U-UAAUUACUGAAU---
pteVam1     UGGCAACUAUGAUGAAA---GAUUU-GU--CUGUAU--GU--AAUA----------UAUUACUAAAU---
eriEur1     UGGCAACUAUGAUGAAG---UAUUUGGU--CUGUA-----------------------UUACUAAAU---
sorAra1     uggcaaCUGUGAUGAAA---UACUUGGU--CUGUAU--GU--AAU----------GCAUUACUAAAU---
echTel1     UGGCAACUAUGAUGACA---AGUUUGGU--C-GUAU--GU--AAU----------AUAUUACUAAAU---
loxAfr2     UGGCAACUGUGAUGACA---GGUUUGGU--CUGUAU--GU--AAUAU---AU-U-UUAUUACUAAAU---
monDom4     UGGCAACAGUGAUGACA---GGUUUGGU--CUGUAU--GU--AAUAU---AU-U-UUAUUACUACAU---
ornAna1     GGGCAACCGUGAUGACA---GGUUCAGU--CUGUAUGUGU--AAUGG---GU-U-UCAUUACUACAU---
galGal3     UGGCAACAAUGAUGACA---GGUACUGUAACUGUAU--GU--GAU-----AU-U-UCAUUACUGCAU---
anoCar1     CGGCAACGGUGAUGACA---CUGUGACC--CUGCAG--GG----------CC-C-UGGCUGCUCCGU---
xenTro2     AGGCAACGGUGAUGAACAAAAAUGGUGU--CUUUAU--GU--AAUU----CC-U-GUGUUACUUCAU---
gasAcu1     GGGGGACAAAGCUGUGU---AAUAAAAG--UUGUAU--GUAUACUAAAGCCU-CCUGUUUAUUUAUUCAU
SS anno     (((((((....................(..((......((..((((..........))))))........
pair symbol abcdefg                    h  ij      kl  mnop          ponmlk        

offset      7         8         9         0         1         2
FR133655    ------------G-A------------GGACAACAGUCCCUCUAAACUGAUGUUGCCAUUU----
panTro2     ------------G-A------------GGACAACAGUCCCUCUAAACUGAUGUUGCCAUUU----
gorGor1     ------------G-A------------GGACAACAGUCCCUCUAAACUGAUGUUGCCUUUU----
ponAbe2     ------------G-A------------GGACAACAGUCCCUCUAAACUGAUGUUGCCAUUU----
rheMac2     ------------G-A------------GGACAACAGUCCCUCUAAACUGAUGUUGCCAUUU----
calJac1     ------------G-A------------GGACAACAGUCCCUCUAAACUGAUGUUGCCauua----
tarSyr1     ------------G-A------------GGACAACAGUCCCUCUAAACUGAUGUUGCCauuu----
micMur1     ------------G-A------------GGACAACAGUCCCUCUAAACUGAUGUUGCCAUUU----
tupBel1     ------------G-U------------GGACAACAGUCCCUCUAAACUGACGUUGCCAUUU----
mm9         ------------G-A------------GGACAACAGUCCCUCUAAACUGAUGUUGCCACUUUU--
rn4         ------------G-A------------GGACAACAGUCCCUCUAAACUGAUGUUGCCAUUUUUU-
dipOrd1     ------------G-A------------GGACAACAGUCCCUCUAAACUGAUGUUGCCAUUUUU--
cavPor3     ------------G-A------------GGACAACAGUCCCUCUAAACUGAUGUUGCCAUUU----
oryCun1     ------------G-A------------GGACAACAGUCCCUCUAAACUGAUGUUGCCAUUA----
ochPri2     ------------G-A------------GGACAACAGUCCCUCUAAACUGAUGUUGCCAUUU----
turTru1     ------------G-A------------AGACAACAGUCCCUCUAAACUGAUGUUGCCAUUCUUUU
bosTau4     ------------G-A------------AGACAACAGUCCCUCUAAACUGAUGUUGCCAUUCUUUC
vicPac1     ------------G-A------------AGACAACAGUCCCUCUAAACUGAUGUUGCCAUUCuuua
equCab2     ------------G-A------------AGACAACAGUCCCUCUAAACUGAUGUUGCCAUUCUUUU
canFam2     ------------G-A------------AGACAGCAGUCCCUCUAAACUGAUGUUGCCAUUGUUUA
myoLuc1     ------------G-A------------AGACAACAGUCCCUCUAAACUGAUGUUGCCAUUCuuua
pteVam1     ------------G-A------------AGACAACAGUCCCUCUAAACUGAUGUUGCCACuuuuua
eriEur1     ------------G-A------------AGACAACAGUCCCUCUAAGCUGAUGuugccauucuuu-
sorAra1     ------------G-A------------AGACAACAGUCCCUCUAAACUGAcguugccauucuuuu
echTel1     ------------G-A------------AGACGACAGUCCCUCUAAACUGAUGUUGCCGUGC----
loxAfr2     ------------G-A------------AGACAACAGUCCCUCUAAACUGAUGUUGCCAUUC----
monDom4     ------------G-A------------AGACACCAGUCCCUCUAAGCUGAUGUUGCCAUUC----
ornAna1     ------------G-A------------AGACACCAGUCCCUCUAAGCUGAUGUUGCCGUCCUUG-
galGal3     ------------G-G------------AGACACCAGUCCCUCUAAACUGAUGUUGCCAU------
anoCar1     ------------G-G------------AGACACCAGUCCCUCUAACCUGAUGUUGC---------
xenTro2     ------------G-U------------AGACAACAGUCCCUCUAAACUGCUGUUACC--------
gasAcu1     UUAUACCAUCACGGGUGAUGGUGAAAUGUUCAACAGUGUUUACAGUCUGA---C-CCACUA----
SS anno     ...........................)))(....)...............))))))).......
pair symbol                            jihh    h               gfedcba