FR135764
- Summary
- Sequence
- Secondary Structure
| Summary | |
|---|---|
| ID | FR135764 |
| Description | C/D box guide small nucleolar RNA (snoRNA) HBII-429 / SNORD100 |
| Accession | AL137783 |
| Sequence Ontology | C_D_box_snoRNA |
| Organism | |
| Genome Mapping | |
| human(hg18) 1 region | chr6:133179634-133179709(+)  |
| Cross Reference | |
| Gene Association / Sense Overlap / Intron | |
| human(hg18) | RPS12 (uc003qdx.1 ) |
| Gene Association / Sense Overlap / 3'UTR | |
| human(hg18) | NR_002436 (uc003qdy.1 ) |
| Sequence Similarity | |
| highly similar |
FR406547 C/D box small nucleolar RNA (snoRNA) HBII-429 / SNORD100 |
| OMIM | ||
|---|---|---|
| ID | Title | Locus |
| 603660 | RIBOSOMAL PROTEIN S12; RPS12 | 6q(chr6:60500001-170899992) |
| MicroArray / Affymetrix GeneChip Exon Array / hg18 | ||
|---|---|---|
| Probe | Transcript Cluster | Probe Locus |
| 2552487 | 2926204 |
chr6:133179635-133179659(+) |
| 5857518 | 2926204 |
chr6:133179653-133179677(+) |
| 3725342 | 2926204 |
chr6:133179678-133179702(+) |
| Reference | |
|---|---|
|
snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs.
Lestrade L. and Weber MJ. Nucleic Acids Res 34 (Database issue), D158-62 (2006)
RNAdb--a comprehensive mammalian noncoding RNA database.
Pang KC.,Stephen S.,Engström PG.,Tajul-Arifin K.,Chen W.,Wahlestedt C.,Lenhard B.,Hayashizaki Y. and Mattick JS. Nucleic Acids Res 33 (Database issue), D125-30 (2005)
Purified box C/D snoRNPs are able to reproduce site-specific 2'-O-methylation of target RNA in vitro.
Galardi S.,Fatica A.,Bachi A.,Scaloni A.,Presutti C. and Bozzoni I. Mol Cell Biol 22 (19), 6663-8 (2002)
RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse.
Hüttenhofer A.,Kiefmann M.,Meier-Ewert S.,O'Brien J.,Lehrach H.,Bachellerie JP. and Brosius J. EMBO J 20 (11), 2943-53 (2001) | |
snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs.
Lestrade L. and Weber MJ.
Nucleic Acids Res 34 (Database issue), D158-62 (2006)
Lestrade L. and Weber MJ.
Nucleic Acids Res 34 (Database issue), D158-62 (2006)
RNAdb--a comprehensive mammalian noncoding RNA database.
Pang KC.,Stephen S.,Engström PG.,Tajul-Arifin K.,Chen W.,Wahlestedt C.,Lenhard B.,Hayashizaki Y. and Mattick JS.
Nucleic Acids Res 33 (Database issue), D125-30 (2005)
Pang KC.,Stephen S.,Engström PG.,Tajul-Arifin K.,Chen W.,Wahlestedt C.,Lenhard B.,Hayashizaki Y. and Mattick JS.
Nucleic Acids Res 33 (Database issue), D125-30 (2005)
Purified box C/D snoRNPs are able to reproduce site-specific 2'-O-methylation of target RNA in vitro.
Galardi S.,Fatica A.,Bachi A.,Scaloni A.,Presutti C. and Bozzoni I.
Mol Cell Biol 22 (19), 6663-8 (2002)
Galardi S.,Fatica A.,Bachi A.,Scaloni A.,Presutti C. and Bozzoni I.
Mol Cell Biol 22 (19), 6663-8 (2002)
RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse.
Hüttenhofer A.,Kiefmann M.,Meier-Ewert S.,O'Brien J.,Lehrach H.,Bachellerie JP. and Brosius J.
EMBO J 20 (11), 2943-53 (2001)
Hüttenhofer A.,Kiefmann M.,Meier-Ewert S.,O'Brien J.,Lehrach H.,Bachellerie JP. and Brosius J.
EMBO J 20 (11), 2943-53 (2001)
>FR135764|AL137783|C/D box guide small nucleolar RNA (snoRNA) HBII-429 / SNORD100|C_D_box_snoRNA|RF00609 Rfam v8.1,SNO1291 RNAdb v2.0,HBII-429 snoRNA-LBME-db release3|Homo sapiens|76nt GCTGTACATGATGACAACTGGCTCCCTCTACTGAACTGCCATGAGGAAACTGCCATGTCACCCTTCTGAT TACAGC
Evidence : putative(Rfam)
Evidence Secondary Structure [putative(Rfam)]
Putative secondary structure predicted by Rfam.
0 1 2 3 4 5 6 GCUGUACAUGAUGACAACUGGCUCCCUCUACUGAACUGCCAUGAGGAAACUGCCAUGUCACCCUUCUGAU ((((((................................................................ 7 UACAGC ))))))
| Experiment | Method | Tissue | Read Number | PubMed |
|---|