FR175840
- Summary
- Sequence
- Secondary Structure
| Summary | |
|---|---|
| ID | FR175840 |
| Description | non-protein coding (noncoding) transcript |
| Accession | AF086155 |
| Sequence Ontology | ncRNA |
| Organism | |
| Genome Mapping | |
| human(hg18) 1 region | chr3:12523553-12556123(+) |
| Cross Reference | |
| Gene Association / Sense Overlap / Exon | |
| human(hg18) | TSEN2 (uc003bwy.1 , uc003bwz.1 , uc003bxa.1 , uc003bxb.1 , uc003bxc.1 ) |
| Gene Association / Sense Overlap / Intron | |
| human(hg18) | TSEN2 (uc003bwy.1 , uc003bwz.1 , uc003bxa.1 , uc003bxb.1 , uc003bxc.1 ) |
| Gene Association / Sense Overlap / 3'UTR | |
| human(hg18) | TSEN2 (uc003bwy.1 , uc003bwz.1 , uc003bxa.1 , uc003bxb.1 , uc003bxc.1 ) |
| Sequence Similarity | |
| OMIM | ||
|---|---|---|
| ID | Title | Locus |
| 607135 | CREATININE CLEARANCE QUANTITATIVE TRAIT LOCUS CRCL |
3p(chr3:1-91700000) |
| 601869 | DEAFNESS, AUTOSOMAL RECESSIVE 15; DFNB15 | 3q(chr3:91700001-199501827) |
| 608448 | INFLAMMATORY BOWEL DISEASE 9; IBD9 | 3p26(chr3:1-8700000) |
| 252350 | MOYAMOYA DISEASE 1; MYMY1 MOYAMOYA DISEASE; MYMY
SPONTANEOUS OCCLUSION OF THE CIRCLE OF WILLIS |
3p26-p24.2(chr3:1-26400000) |
| 600644 | POLIOVIRUS RECEPTOR-LIKE 1; PVRL1 HERPESVIRUS ENTRY MEDIATOR C; HVEC
POLIOVIRUS RECEPTOR-RELATED 1; PVRR1
PVRR; PRR
NECTIN 1 |
11q23-q24(chr11:110000001-130300000) |
| 609299 | PROSTATE CANCER, HEREDITARY, 5 HPC5 |
3p26(chr3:1-8700000) |
| 606658 | SPINOCEREBELLAR ATAXIA 15; SCA15 SPINOCEREBELLAR ATAXIA 16, FORMERLY; SCA16, FORMERLY | 3p26.1-p25.3(chr3:5500001-11500000) |
| 117360 | SPINOCEREBELLAR ATAXIA 29 SCA29
CEREBELLAR ATAXIA, CONGENITAL, NONPROGRESSIVE, AUTOSOMAL DOMINANT
CEREBELLAR VERMIS APLASIA
APLASIA OF CEREBELLAR VERMIS; ACV
CEREBELLAR ATAXIA, EARLY-ONSET, NONPROGRESSIVE |
3p26(chr3:1-8700000) |
| 608982 | STATURE QUANTITATIVE TRAIT LOCUS 5; STQTL5 | 3p26(chr3:1-8700000) |
| 608753 | tRNA SPLICING ENDONUCLEASE 2, S. CEREVISIAE, HOMOLOG OF; TSEN2 SEN2, YEAST, HOMOLOG OF; SEN2 |
3p25.1(chr3:12400001-14700000) |
| MicroArray / Affymetrix GeneChip Exon Array / hg18 | ||
|---|---|---|
| Probe | Transcript Cluster | Probe Locus |
| 2936672 | 2611122 ![]() |
chr3:12523746-12523770(+) ![]() |
| 1423439 | 2611122 ![]() |
chr3:12523796-12523820(+) ![]() |
| 1513986 | 2611122 ![]() |
chr3:12523818-12523842(+) ![]() |
| 4729280 | 2611122 ![]() |
chr3:12523841-12523865(+) ![]() |
| Reference | |
|---|---|
|
The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts.
Genome Information Integration Project And H-Invitational 2 .,Yamasaki C.,Murakami K.,Fujii Y.,Sato Y.,Harada E.,Takeda J.,Taniya T.,Sakate R.,Kikugawa S.,Shimada M.,Tanino M.,Koyanagi KO.,Barrero RA.,Gough C.,Chun HW.,Habara T.,Hanaoka H.,Hayakawa Y.,Hilton PB.,Kaneko Y.,Kanno M.,Kawahara Y.,Kawamura T.,Matsuya A.,Nagata N.,Nishikata K.,Noda AO.,Nurimoto S.,Saichi N.,Sakai H.,Sanbonmatsu R.,Shiba R.,Suzuki M.,Takabayashi K.,Takahashi A.,Tamura T.,Tanaka M.,Tanaka S.,Todokoro F.,Yamaguchi K.,Yamamoto N.,Okido T.,Mashima J.,Hashizume A.,Jin L.,Lee KB.,Lin YC.,Nozaki A.,Sakai K.,Tada M.,Miyazaki S.,Makino T.,Ohyanagi H.,Osato N.,Tanaka N.,Suzuki Y.,Ikeo K.,Saitou N.,Sugawara H.,O'Donovan C.,Kulikova T.,Whitfield E.,Halligan B.,Shimoyama M.,Twigger S.,Yura K.,Kimura K.,Yasuda T.,Nishikawa T.,Akiyama Y.,Motono C.,Mukai Y.,Nagasaki H.,Suwa M.,Horton P.,Kikuno R.,Ohara O.,Lancet D.,Eveno E.,Graudens E.,Imbeaud S.,Debily MA.,Hayashizaki Y.,Amid C.,Han M.,Osanger A.,Endo T.,Thomas MA.,Hirakawa M.,Makalowski W.,Nakao M.,Kim NS.,Yoo HS.,De Souza SJ.,Bonaldo Mde F.,Niimura Y.,Kuryshev V.,Schupp I.,Wiemann S.,Bellgard M.,Shionyu M.,Jia L.,Thierry-Mieg D.,Thierry-Mieg J.,Wagner L.,Zhang Q.,Go M.,Minoshima S.,Ohtsubo M.,Hanada K.,Tonellato P.,Isogai T.,Zhang J.,Lenhard B.,Kim S.,Chen Z.,Hinz U.,Estreicher A.,Nakai K.,Makalowska I.,Hide W.,Tiffin N.,Wilming L.,Chakraborty R.,Soares MB.,Chiusano ML.,Suzuki Y.,Auffray C.,Yamaguchi-Kabata Y.,Itoh T.,Hishiki T.,Fukuchi S.,Nishikawa K.,Sugano S.,Nomura N.,Tateno Y.,Imanishi T. and Gojobori T. Nucleic Acids Res 36 (Database issue), D793-9 (2008)
RNAdb--a comprehensive mammalian noncoding RNA database.
Pang KC.,Stephen S.,Engström PG.,Tajul-Arifin K.,Chen W.,Wahlestedt C.,Lenhard B.,Hayashizaki Y. and Mattick JS. Nucleic Acids Res 33 (Database issue), D125-30 (2005)
Integrative annotation of 21,037 human genes validated by full-length cDNA clones.
Imanishi T.,Itoh T.,Suzuki Y.,O'Donovan C.,Fukuchi S.,Koyanagi KO.,Barrero RA.,Tamura T.,Yamaguchi-Kabata Y.,Tanino M.,Yura K.,Miyazaki S.,Ikeo K.,Homma K.,Kasprzyk A.,Nishikawa T.,Hirakawa M.,Thierry-Mieg J.,Thierry-Mieg D.,Ashurst J.,Jia L.,Nakao M.,Thomas MA.,Mulder N.,Karavidopoulou Y.,Jin L.,Kim S.,Yasuda T.,Lenhard B.,Eveno E.,Suzuki Y.,Yamasaki C.,Takeda J.,Gough C.,Hilton P.,Fujii Y.,Sakai H.,Tanaka S.,Amid C.,Bellgard M.,Bonaldo Mde F.,Bono H.,Bromberg SK.,Brookes AJ.,Bruford E.,Carninci P.,Chelala C.,Couillault C.,de Souza SJ.,Debily MA.,Devignes MD.,Dubchak I.,Endo T.,Estreicher A.,Eyras E.,Fukami-Kobayashi K.,Gopinath GR.,Graudens E.,Hahn Y.,Han M.,Han ZG.,Hanada K.,Hanaoka H.,Harada E.,Hashimoto K.,Hinz U.,Hirai M.,Hishiki T.,Hopkinson I.,Imbeaud S.,Inoko H.,Kanapin A.,Kaneko Y.,Kasukawa T.,Kelso J.,Kersey P.,Kikuno R.,Kimura K.,Korn B.,Kuryshev V.,Makalowska I.,Makino T.,Mano S.,Mariage-Samson R.,Mashima J.,Matsuda H.,Mewes HW.,Minoshima S.,Nagai K.,Nagasaki H.,Nagata N.,Nigam R.,Ogasawara O.,Ohara O.,Ohtsubo M.,Okada N.,Okido T.,Oota S.,Ota M.,Ota T.,Otsuki T.,Piatier-Tonneau D.,Poustka A.,Ren SX.,Saitou N.,Sakai K.,Sakamoto S.,Sakate R.,Schupp I.,Servant F.,Sherry S.,Shiba R.,Shimizu N.,Shimoyama M.,Simpson AJ.,Soares B.,Steward C.,Suwa M.,Suzuki M.,Takahashi A.,Tamiya G.,Tanaka H.,Taylor T.,Terwilliger JD.,Unneberg P.,Veeramachaneni V.,Watanabe S.,Wilming L.,Yasuda N.,Yoo HS.,Stodolsky M.,Makalowski W.,Go M.,Nakai K.,Takagi T.,Kanehisa M.,Sakaki Y.,Quackenbush J.,Okazaki Y.,Hayashizaki Y.,Hide W.,Chakraborty R.,Nishikawa K.,Sugawara H.,Tateno Y.,Chen Z.,Oishi M.,Tonellato P.,Apweiler R.,Okubo K.,Wagner L.,Wiemann S.,Strausberg RL.,Isogai T.,Auffray C.,Nomura N.,Gojobori T. and Sugano S. PLoS Biol 2 (6), e162 (2004) | |
