FR175840

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  • Summary
  • Sequence
  • Secondary Structure
Evidence Mapping [H-invitational v6.0]
extracted from H-invitational v6.0
Summary
ID FR175840
Description non-protein coding (noncoding) transcript
Accession AF086155
Sequence Ontology ncRNA
Organism
Homo sapiens human , man
Genome Mapping
human(hg18)           1 region chr3:12523553-12556123(+) 
Cross Reference
RNAdb v2.0 HIV2632
H-invitational v5.0 HIT000067034
Gene Association / Sense Overlap / Exon
human(hg18) TSEN2 (uc003bwy.1 , uc003bwz.1 , uc003bxa.1 , uc003bxb.1 , uc003bxc.1 )
Gene Association / Sense Overlap / Intron
human(hg18) TSEN2 (uc003bwy.1 , uc003bwz.1 , uc003bxa.1 , uc003bxb.1 , uc003bxc.1 )
Gene Association / Sense Overlap / 3'UTR
human(hg18) TSEN2 (uc003bwy.1 , uc003bwz.1 , uc003bxa.1 , uc003bxb.1 , uc003bxc.1 )
Sequence Similarity
  

OMIM
IDTitleLocus
607135  CREATININE CLEARANCE QUANTITATIVE TRAIT LOCUS
CRCL
3p(chr3:1-91700000)
601869  DEAFNESS, AUTOSOMAL RECESSIVE 15; DFNB15 3q(chr3:91700001-199501827)
608448  INFLAMMATORY BOWEL DISEASE 9; IBD9 3p26(chr3:1-8700000)
252350  MOYAMOYA DISEASE 1; MYMY1
MOYAMOYA DISEASE; MYMY
SPONTANEOUS OCCLUSION OF THE CIRCLE OF WILLIS
3p26-p24.2(chr3:1-26400000)
600644  POLIOVIRUS RECEPTOR-LIKE 1; PVRL1
HERPESVIRUS ENTRY MEDIATOR C; HVEC
POLIOVIRUS RECEPTOR-RELATED 1; PVRR1
PVRR; PRR
NECTIN 1
11q23-q24(chr11:110000001-130300000)
609299  PROSTATE CANCER, HEREDITARY, 5
HPC5
3p26(chr3:1-8700000)
606658  SPINOCEREBELLAR ATAXIA 15; SCA15 SPINOCEREBELLAR ATAXIA 16, FORMERLY; SCA16, FORMERLY 3p26.1-p25.3(chr3:5500001-11500000)
117360  SPINOCEREBELLAR ATAXIA 29
SCA29
CEREBELLAR ATAXIA, CONGENITAL, NONPROGRESSIVE, AUTOSOMAL DOMINANT
CEREBELLAR VERMIS APLASIA
APLASIA OF CEREBELLAR VERMIS; ACV
CEREBELLAR ATAXIA, EARLY-ONSET, NONPROGRESSIVE
3p26(chr3:1-8700000)
608982  STATURE QUANTITATIVE TRAIT LOCUS 5; STQTL5 3p26(chr3:1-8700000)
608753  tRNA SPLICING ENDONUCLEASE 2, S. CEREVISIAE, HOMOLOG OF; TSEN2
SEN2, YEAST, HOMOLOG OF; SEN2
3p25.1(chr3:12400001-14700000)

MicroArray / Affymetrix GeneChip Exon Array / hg18
ProbeTranscript ClusterProbe Locus
2936672 2611122  chr3:12523746-12523770(+) 
1423439 2611122  chr3:12523796-12523820(+) 
1513986 2611122  chr3:12523818-12523842(+) 
4729280 2611122  chr3:12523841-12523865(+) 

Reference
The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts.
Genome Information Integration Project And H-Invitational 2 .,Yamasaki C.,Murakami K.,Fujii Y.,Sato Y.,Harada E.,Takeda J.,Taniya T.,Sakate R.,Kikugawa S.,Shimada M.,Tanino M.,Koyanagi KO.,Barrero RA.,Gough C.,Chun HW.,Habara T.,Hanaoka H.,Hayakawa Y.,Hilton PB.,Kaneko Y.,Kanno M.,Kawahara Y.,Kawamura T.,Matsuya A.,Nagata N.,Nishikata K.,Noda AO.,Nurimoto S.,Saichi N.,Sakai H.,Sanbonmatsu R.,Shiba R.,Suzuki M.,Takabayashi K.,Takahashi A.,Tamura T.,Tanaka M.,Tanaka S.,Todokoro F.,Yamaguchi K.,Yamamoto N.,Okido T.,Mashima J.,Hashizume A.,Jin L.,Lee KB.,Lin YC.,Nozaki A.,Sakai K.,Tada M.,Miyazaki S.,Makino T.,Ohyanagi H.,Osato N.,Tanaka N.,Suzuki Y.,Ikeo K.,Saitou N.,Sugawara H.,O'Donovan C.,Kulikova T.,Whitfield E.,Halligan B.,Shimoyama M.,Twigger S.,Yura K.,Kimura K.,Yasuda T.,Nishikawa T.,Akiyama Y.,Motono C.,Mukai Y.,Nagasaki H.,Suwa M.,Horton P.,Kikuno R.,Ohara O.,Lancet D.,Eveno E.,Graudens E.,Imbeaud S.,Debily MA.,Hayashizaki Y.,Amid C.,Han M.,Osanger A.,Endo T.,Thomas MA.,Hirakawa M.,Makalowski W.,Nakao M.,Kim NS.,Yoo HS.,De Souza SJ.,Bonaldo Mde F.,Niimura Y.,Kuryshev V.,Schupp I.,Wiemann S.,Bellgard M.,Shionyu M.,Jia L.,Thierry-Mieg D.,Thierry-Mieg J.,Wagner L.,Zhang Q.,Go M.,Minoshima S.,Ohtsubo M.,Hanada K.,Tonellato P.,Isogai T.,Zhang J.,Lenhard B.,Kim S.,Chen Z.,Hinz U.,Estreicher A.,Nakai K.,Makalowska I.,Hide W.,Tiffin N.,Wilming L.,Chakraborty R.,Soares MB.,Chiusano ML.,Suzuki Y.,Auffray C.,Yamaguchi-Kabata Y.,Itoh T.,Hishiki T.,Fukuchi S.,Nishikawa K.,Sugano S.,Nomura N.,Tateno Y.,Imanishi T. and Gojobori T.
Nucleic Acids Res 36 (Database issue), D793-9 (2008)
RNAdb--a comprehensive mammalian noncoding RNA database.
Pang KC.,Stephen S.,Engström PG.,Tajul-Arifin K.,Chen W.,Wahlestedt C.,Lenhard B.,Hayashizaki Y. and Mattick JS.
Nucleic Acids Res 33 (Database issue), D125-30 (2005)
Integrative annotation of 21,037 human genes validated by full-length cDNA clones.
Imanishi T.,Itoh T.,Suzuki Y.,O'Donovan C.,Fukuchi S.,Koyanagi KO.,Barrero RA.,Tamura T.,Yamaguchi-Kabata Y.,Tanino M.,Yura K.,Miyazaki S.,Ikeo K.,Homma K.,Kasprzyk A.,Nishikawa T.,Hirakawa M.,Thierry-Mieg J.,Thierry-Mieg D.,Ashurst J.,Jia L.,Nakao M.,Thomas MA.,Mulder N.,Karavidopoulou Y.,Jin L.,Kim S.,Yasuda T.,Lenhard B.,Eveno E.,Suzuki Y.,Yamasaki C.,Takeda J.,Gough C.,Hilton P.,Fujii Y.,Sakai H.,Tanaka S.,Amid C.,Bellgard M.,Bonaldo Mde F.,Bono H.,Bromberg SK.,Brookes AJ.,Bruford E.,Carninci P.,Chelala C.,Couillault C.,de Souza SJ.,Debily MA.,Devignes MD.,Dubchak I.,Endo T.,Estreicher A.,Eyras E.,Fukami-Kobayashi K.,Gopinath GR.,Graudens E.,Hahn Y.,Han M.,Han ZG.,Hanada K.,Hanaoka H.,Harada E.,Hashimoto K.,Hinz U.,Hirai M.,Hishiki T.,Hopkinson I.,Imbeaud S.,Inoko H.,Kanapin A.,Kaneko Y.,Kasukawa T.,Kelso J.,Kersey P.,Kikuno R.,Kimura K.,Korn B.,Kuryshev V.,Makalowska I.,Makino T.,Mano S.,Mariage-Samson R.,Mashima J.,Matsuda H.,Mewes HW.,Minoshima S.,Nagai K.,Nagasaki H.,Nagata N.,Nigam R.,Ogasawara O.,Ohara O.,Ohtsubo M.,Okada N.,Okido T.,Oota S.,Ota M.,Ota T.,Otsuki T.,Piatier-Tonneau D.,Poustka A.,Ren SX.,Saitou N.,Sakai K.,Sakamoto S.,Sakate R.,Schupp I.,Servant F.,Sherry S.,Shiba R.,Shimizu N.,Shimoyama M.,Simpson AJ.,Soares B.,Steward C.,Suwa M.,Suzuki M.,Takahashi A.,Tamiya G.,Tanaka H.,Taylor T.,Terwilliger JD.,Unneberg P.,Veeramachaneni V.,Watanabe S.,Wilming L.,Yasuda N.,Yoo HS.,Stodolsky M.,Makalowski W.,Go M.,Nakai K.,Takagi T.,Kanehisa M.,Sakaki Y.,Quackenbush J.,Okazaki Y.,Hayashizaki Y.,Hide W.,Chakraborty R.,Nishikawa K.,Sugawara H.,Tateno Y.,Chen Z.,Oishi M.,Tonellato P.,Apweiler R.,Okubo K.,Wagner L.,Wiemann S.,Strausberg RL.,Isogai T.,Auffray C.,Nomura N.,Gojobori T. and Sugano S.
PLoS Biol 2 (6), e162 (2004)

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