fRNAdb - Detail Page [FR194364]

FR194364

Summary
Sequence
Secondary Structure

Evidence Mapping [RNAz]

extracted from RNAz track on Genome Browser@hg18

Summary
ID	FR194364
Description	Putative conserved noncoding region (RNAz)
Accession
Sequence Ontology	nc_conserved_region
Organism
Homo sapiens	human , man
Genome Mapping
human(hg18) 1 region	chrX:133503035-133503131(+)
Cross Reference
RNAdb v2.0	RNZ36643
Sequence Similarity

Reference
Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. Washietl S.,Hofacker IL.,Lukasser M.,Hüttenhofer A. and Stadler PF. Nat Biotechnol 23 (11), 1383-90 (2005) RNAdb--a comprehensive mammalian noncoding RNA database. Pang KC.,Stephen S.,Engström PG.,Tajul-Arifin K.,Chen W.,Wahlestedt C.,Lenhard B.,Hayashizaki Y. and Mattick JS. Nucleic Acids Res 33 (Database issue), D125-30 (2005)

Reference

Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome.
Washietl S.,Hofacker IL.,Lukasser M.,Hüttenhofer A. and Stadler PF.
Nat Biotechnol 23 (11), 1383-90 (2005)

RNAdb--a comprehensive mammalian noncoding RNA database.
Pang KC.,Stephen S.,Engström PG.,Tajul-Arifin K.,Chen W.,Wahlestedt C.,Lenhard B.,Hayashizaki Y. and Mattick JS.
Nucleic Acids Res 33 (Database issue), D125-30 (2005)

Evidence :

Evidence Secondary Structure [putative(CentroidAlign)]

Putative secondary structure predicted by CentroidAlign.

Click here to view the PDF file.

offset      0         1         2         3         4         5         6
FR194364    UAUGAAGAUGAGUGG-----CUCCCAGACCUUUCAGUUAUCAAUCUGUCACAAGUGCACACUG-GUAUCU
gorGor1     UAUGAAGAUGAGUGG-----CUCCCAGACCUUUCAGUUAUCAAUCUGUCACAAGUGCACACUG-GUAUCU
ponAbe2     UACGAAGAUGAGUGG-----CUCCCAGACCUUUCAGUUAUCAAUCUGUCACAAGUGCACACUG-GUAUCU
rheMac2     UAUGAAGAUGAAUGG-----CUCCCAGACCUUUCAGUUAUCAAUCUGUCACAAGUGCACAGUG-GUAUCU
calJac1     UAUGAAGACGAGUGG-----CUCCCAGACCUUUCAGUUAUCAAUCUGUCACAAGUGCACAGUG-AUAUCU
tarSyr1     UAUGAAGAUGAGUGG-----CUCCCAGACCUUUCAGUUAUCAAUCUGUCACAAGUGCACUGUG-GUAUCU
micMur1     UCUGAAGGUGAGUGG-----CUCUCAGACGUUUCAGUUAUCAAUCUGUCACAAGUGCACAGUG-GUAUCU
otoGar1     UAUGAAGCUGAGUGG-----CUCUCAGACCUUUCAGUUAUCAAUCUGUCACAAGUGCACAGUG-GUAGCU
mm9         UAGGAAGAGGAGUGG-----CUCCCAGACCUUUCAGUUAUCAAUCUGUCACAAGGGCACAGUG-GUAUCU
rn4         UAGGAAGAGGAGUGG-----CUCCCAGACCUUUCAGUUAUCAAUCUGUCACAAGUGCGCAGUG-GUAUCU
cavPor3     UGUGAAGAUGAGUGG-----CUCCCAGACCUUUCAGUUAUCAAUCUGUCACAAGCGCACAAUG-GUAUCU
speTri1     UAUGAAGAUGAGUGG-----CUCCCAGACCUUUCAGUUAUCAAUCUGUCACAAGUGCACAGUG-GUAUCU
oryCun1     UGUGGAGACGAGUGG-----CUCCCAGACCUUUCAGUUAUCAAUCUGUCACAAGUGCACAGUG-GUAUCU
vicPac1     CGUGAAGAUGAGCGG-----CUCCCAGACCUUUCAGUUAUCAAUCUGUCACAAGUGCACAGUG-GUAUCU
turTru1     UGUGAAGAUGAGCGG-----CUCCCAGACCUUUCAGUUAUCAAUCUGUCACAAGUGCACAGUG-GUAUCU
bosTau4     UGUGAAGAUGAGCGG-----CUCCCAGACCUUUCAGUUAUCAAUCUGUCACAAGUGCACAGUG-GUAUCU
equCab2     CAUGAGGAUGAAUGG-----CUCCCAGACCUUUCAGUUAUCAAUCUGUCACAAGUGCACAGUG-GUAUCU
felCat3     UGUGAAGAGGAGUGG-----CUCCCAGACCUUUCAGUUAUCAAUCUGUCACAAGUGCACAGUG-GUCUCU
canFam2     UAUGAAGAUGAGUGG-----CUCCCAGACCUUUCAGUUAUCAAUCUGUCACAAGUGCACAGUG-GUAUCU
pteVam1     UAUGGAGAUAAGUGG-----CUCCCAGACCUUUCAGUUAUCAAUCUGUCACAAGUGCACAAUG-GUCUCU
eriEur1     UCUGUAGAUGAAUGCCCCCACUCCCCGACCUUUUAGUUGUUaaucugucACAAGUGCACAGCA-GUGACU
loxAfr2     UACGAAGAUGAGUGG-----CUCCCAGACCUUUCAGUUAUCAAUCUGUCACAAGUGCACAGUG-GUAUCU
proCap1     UAUGAAGAUGAGUGG-----CUCCCAGACAUUUCAGUUAUCAAUCUGUCACAAGUGCACAGUG-GUAUCU
echTel1     UAGGAGACCAAGAGG------CCCUAAACCUUUCAGUUAUCAAUCUGUCACAAGUAUGCAGUG-GUAUCC
dasNov2     UAUGAAGGUGAGUGG-----CUCUCAGACCUUUCAGUUAUCAAUCUGUCACAAGUGCACAGUGGGUAUCU
SS anno     .............((.....(.(.(((((.((((.(..((((.((((((((.((.((.......))..))
pair symbol              ab     c d efghi jklm n  opqr stuvwxyz AB CD       DC  BA

offset      7         8         9
FR194364    CGUGACAUGAUGAUCCCCGAGAUGUCUGAGAUC
gorGor1     CGUGACAUGAUGAUCCCCGAGAUGUCUGAGAUC
ponAbe2     CGUGACAUGAUGAUCCCCGAGAUGUCUGAGAUC
rheMac2     CGUGACAUGAUGAUCCCCGAGAUGUCUGAGGUC
calJac1     CGUGACACGAUGAUCCCCGAGAUGUCUGAGGUC
tarSyr1     CGUGACAUGAUGAUCCCCGAGAUGUCUGAGGUC
micMur1     CGUGACAUGAUGAUCCCCGAGAUGUCUGAGGUC
otoGar1     CGUGACAUGAUGAUCCCCGAGAUGUCUGAGGUC
mm9         CGUGACAUGAUGAUCCCCGAGACGUCUGAGAUC
rn4         CGUGACAUGAUGAUCCCCGAGACGUCUGAGAUC
cavPor3     GGUGACAUGAUGAUCCCCGAAACGUCUGAGGUC
speTri1     CGUGACAUGAUGAUCCCCGAGAUGUCUGAGGUC
oryCun1     CGUGACAUGAUGAUCCCCGAGAUGUCUGAGGCC
vicPac1     CGUGACAUGAUGAUCCCCGAGAUGUCUGAGGUC
turTru1     CGUGACAUGAUGAUCCCCGAGACGUCUGAGGUC
bosTau4     CGUGACAUGAUGAUCCCCGAGAUGUCUGAGGUC
equCab2     CGUGACAUGAUGAUCCCCGAGAUGUCUGAGG--
felCat3     CGUGACAUGAUGAUCCCCGAGAUGUCUGAGGUC
canFam2     CGUGACAUGAUGAUCCCCGAGAUGUCUGAGGUC
pteVam1     CGUGACAUGAUGAUCCCCGAGAUGUCUGAGGUC
eriEur1     CAUGACAU---GAUCUCUGAGAUGUCUCAGGUA
loxAfr2     CGUGACAUGAUGAUCCCCGAAAUGUCUGAGGUC
proCap1     CGUGACAUGAUGAUCCCCGAAAUGUCUGAGGUC
echTel1     CAUGACAGG--GAUCCCCGAAAUGCCUAAGGUC
dasNov2     CGUGACAUGAUGAUCCCCGAGAUGUCUGAGGUC
SS anno     .)))))).))))))..).)))).))))).))))
pair symbol  zyxwvu tsrqpo  n mlkj ihgfe dcba

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