FR196212

[Return]
  • Summary
  • Sequence
  • Secondary Structure
Evidence Sequence Similarity [highly similar]
Almost same sequences with one mismatch or one gap
Summary
ID FR196212
Description U6 spliceosomal RNA
Accession AC004528 , AC009292 , AC010894 , AC022254 , AC083817 , AC083904 , AC087040 , AC087891 , AC092074 , AC097354 , AC100400 , AC101776 , AC102643 , AC109280 , AC110257 , AC112131 , AC112139 , AC112706 , AC113054 , AC114207 , AC114634 , AC118546 , AC120387 , AC120800 , AC121149 , AC121833 , AC121850 , AC121969 , AC122400 , AC122870 , AC124175 , AC124400 , AC125487 , AC126280 , AC126694 , AC131029 , AC132584 , AC132610 , AC138591 , AC139159 , AC139223 , AC139329 , AC139884 , AC140336 , AC142110 , AC146131 , AC153149 , AC153891 , AC154517 , AC154606 , AC156459 , AC156562 , AC156569 , AC159821 , AC160392 , AC163720 , AC164078 , AJ400878 , AK001495 , AK026948 , AL138764 , AL603843 , AL627238 , AL671671 , AL672082 , AL731658 , AL772324 , AL833788 , AL844582 , AL845292 , CR382328 , K03239 , M14486 , X07425 , X59362 , Z98950
Sequence Ontology U6_snRNA
Organism
Homo sapiens human , man
Mus musculus LK3 transgenic mice , Mus muscaris , Mus sp. 129SV , house mouse , mice C57BL/6xCBA/CaJ hybrid , mouse , nude mice , transgenic mice
Pan troglodytes Chimpansee troglodytes , chimpanzee
Rattus norvegicus Buffalo rat , Gunn rats , Norway rat , Rattus PC12 clone IS , Rattus norvegicus8 , Rattus norwegicus , Rattus rattiscus , Rattus sp. strain Wistar , Sprague-Dawley rat , Wistar rats , brown rat , laboratory rat , rat , rats , zitter rats
Genome Mapping
human(hg18)
(mapping suppressed due to excessive repeat)
mouse(mm9)
(mapping suppressed due to excessive repeat)
rat(rn3)
(mapping suppressed due to excessive repeat)
Cross Reference
Rfam v8.1 RF00026
NONCODE v1.0 u3878
Sequence Similarity
highly similar FR010125   U6 spliceosomal RNA
FR027467   small nuclear RNA (snRNA)
FR028031   U6 spliceosomal RNA
FR053076   U6 spliceosomal RNA
FR054939   U6 spliceosomal RNA
FR055494   U6 spliceosomal RNA
FR083983   U6 spliceosomal RNA
FR086115   U6 spliceosomal RNA
FR131073   U6 spliceosomal RNA
FR137375   U6 spliceosomal RNA
FR143807   U6 spliceosomal RNA
FR160473   U6 spliceosomal RNA
FR172460   U6 spliceosomal RNA
FR183065   U6 spliceosomal RNA
FR188729   U6 spliceosomal RNA
FR189952   U6 spliceosomal RNA
FR191006   U6 spliceosomal RNA
FR192047   U6 spliceosomal RNA
FR211088   U6 spliceosomal RNA
FR251671   U6 spliceosomal RNA
FR255961   U6 spliceosomal RNA
FR271130   U6 spliceosomal RNA
FR279583   U6 spliceosomal RNA
FR348801   U6 spliceosomal RNA
FR357042   U6 spliceosomal RNA
FR357334   U6 spliceosomal RNA
FR359417   U6 spliceosomal RNA
FR380074   U6 spliceosomal RNA

Reference
NONCODE: an integrated knowledge database of non-coding RNAs.
Liu C.,Bai B.,Skogerbø G.,Cai L.,Deng W.,Zhang Y.,Bu D.,Zhao Y. and Chen R.
Nucleic Acids Res 33 (Database issue), D112-5 (2005)
The uRNA database.
Zwieb C.
Nucleic Acids Res 25 (1), 102-3 (1997)
The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions.
Balakin AG.,Smith L. and Fournier MJ.
Cell 86 (5), 823-34 (1996)
Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions.
Orum H.,Nielsen H. and Engberg J.
J Mol Biol 222 (2), 219-32 (1991)
The spliceosomal snRNAs of Caenorhabditis elegans.
Thomas J.,Lea K.,Zucker-Aprison E. and Blumenthal T.
Nucleic Acids Res 18 (9), 2633-42 (1990)
Spliceosomal snRNAs.
Guthrie C. and Patterson B.
Annu Rev Genet 22 (), 387-419 (1988)

[Return]