FR209808
- Summary
- Sequence
- Secondary Structure
| Summary | |
|---|---|
| ID | FR209808 |
| Description | Piwi-interacting RNA (piRNA) |
| Accession | DQ572982 |
| Sequence Ontology | piRNA |
| Organism | |
| Genome Mapping | |
| human(hg18) 21 regions* | chr12:99075756-99075784(+)  |
| chr15:20257896-20257924(+) |
|
| chr15:21160477-21160505(-) |
|
| chr15:26306554-26306582(-) |
|
| chr15:26567982-26568010(+) |
|
| chr15:28880247-28880275(-) |
|
| chr15:80556886-80556914(+) |
|
| chr15:80767074-80767102(-) |
|
| chr15:80943470-80943498(+) |
|
| chr15:82664839-82664867(+) |
|
| chr15:82740375-82740403(-) |
|
| chr15:83553917-83553945(+) |
|
| chr15:98149489-98149517(-) |
|
| chr15:100130618-100130646(+) |
|
| chr15_random:31265-31293(+) |
|
| chr15_random:80826-80854(-) |
|
| chr15_random:267399-267427(-) |
|
| chr15_random:438616-438644(-) |
|
| chr15_random:658550-658578(-) |
|
| chrY:24766146-24766174(+) |
|
| chrY:26015038-26015066(-) |
|
| Cross Reference | |
| Sequence Similarity | |
| highly similar |
FR026263 Piwi-interacting RNA (piRNA) |
| FR184813 Piwi-interacting RNA (piRNA) | |
| FR381420 Piwi-interacting RNA (piRNA) | |
| OMIM | ||
|---|---|---|
| ID | Title | Locus |
| 400035 | GOLGI AUTOANTIGEN, GOLGIN SUBFAMILY A, 2-LIKE, Y-LINKED; GOLGA2LY GOLGA2-LIKE, Y-LINKED |
|
| Reference | |
|---|---|
|
A germline-specific class of small RNAs binds mammalian Piwi proteins.
Girard A.,Sachidanandam R.,Hannon GJ. and Carmell MA. Nature 442 (7099), 199-202 (2006)
RNAdb--a comprehensive mammalian noncoding RNA database.
Pang KC.,Stephen S.,Engström PG.,Tajul-Arifin K.,Chen W.,Wahlestedt C.,Lenhard B.,Hayashizaki Y. and Mattick JS. Nucleic Acids Res 33 (Database issue), D125-30 (2005) | |
A germline-specific class of small RNAs binds mammalian Piwi proteins.
Girard A.,Sachidanandam R.,Hannon GJ. and Carmell MA.
Nature 442 (7099), 199-202 (2006)
Girard A.,Sachidanandam R.,Hannon GJ. and Carmell MA.
Nature 442 (7099), 199-202 (2006)
RNAdb--a comprehensive mammalian noncoding RNA database.
Pang KC.,Stephen S.,Engström PG.,Tajul-Arifin K.,Chen W.,Wahlestedt C.,Lenhard B.,Hayashizaki Y. and Mattick JS.
Nucleic Acids Res 33 (Database issue), D125-30 (2005)
Pang KC.,Stephen S.,Engström PG.,Tajul-Arifin K.,Chen W.,Wahlestedt C.,Lenhard B.,Hayashizaki Y. and Mattick JS.
Nucleic Acids Res 33 (Database issue), D125-30 (2005)
>FR209808|DQ572982|Piwi-interacting RNA (piRNA)|piRNA|PIR34093 RNAdb v2.0|Homo sapiens|29nt TCACAGGTGAAATGGTGTCTGACCACTGG
Evidence : putative(CentroidFold)
Evidence Secondary Structure [putative(CentroidFold)]
Putative secondary structure predicted by CentroidFold(-g=4).
0 1 2 UCACAGGUGAAAUGGUGUCUGACCACUGG .............((.......)).....
| Experiment | Method | Tissue | Read Number | PubMed |
|---|