FR212011

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  • Summary
  • Sequence
  • Secondary Structure

Evidence Secondary Structure [putative(CentroidAlign)]
Putative secondary structure predicted by CentroidAlign.

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offset      0         1         2         3         4         5         6
FR212011    GGGUAC-GGGGAUGGA----U------GGUCGACCAGUUGGAAAGUAAUUGUUUCUAA-UGUACUUCACC
ponAbe2     GGGUAC-GGGGAUGGA----U------GGUCGACCAGUUGGAAAGUAAUUGUUUCUAA-UGUACUUCACC
gorGor1     GGGUAC-GGGGAUGGA----U------GGUCGACCAGUUGGAAAGUAAUUGUUUCUAA-UGUACUUCACC
rheMac2     GGGUAC-GGGGAUGGA----U------GGUCGACCAGUUGGAAAGUAAUUGUUUCUAA-UGUACUUCACC
panTro2     GGGUAC-GGGGAUGGA----U------GGUCGACCAGUUGGAAAGUAAUUGUUUCUAA-UGUACUUCACC
calJac1     GGGUAG--GGGAUGGA----U------GGUCGACCAGUUGGAAAGUAAUUGUUUCUAA-UGUACUUCACC
micMur1     GGGUAU-GGGGACGGA----U------GGUCGACCAGUUGGAAAGUAAUUGUCCCCAA-UGUACUUCACC
otoGar1     GGGUAC--AGGAUGGA----U------GGUCGACCAGUUGGAAAGUAAUUGUUUCUAA-UGUACUUCACC
tupBel1     GGGUAC-AGGGACGGG----U------GGUCGACCAGUUGGAAAGUAAUUGUCUCUAA-UGUACUUCACC
cavPor3     GGGUAG--CGGACGGA----U------GGUCGACCAGUUGGAAAGUAAUUGUCUCUAA-UGUACUUCACC
dipOrd1     GGGCAU--GUGACGGA----U------GGUCGACCAGUUGGAAAGUAAUUGUUUCUAA-UGUACUUCACC
rn4         GGGUAU--GGGACGGA----U------GGUCGACCAGCUGGAAAGUAAUUGUUUCUAA-UGUACUUCACC
turTru1     GGGUAC--AGGAUGGA----U------GGUCGACCAGUUGGAAAGUAAUUGUUUCUAA-UGUACUUCACC
bosTau4     GGGUAC--AGGACGGA----U------GGUCGACCAGUUGGAAAGUAAUUGUUUCUAA-UGUACUUCACC
equCab2     GGGUAC--AGGAGGGA----U------GGUCGACCAGUUGGAAAGUAAUUGUUUCUAA-UGUACUUCACC
ochPri2     GGGUCU-UGC---GGCGGGUGGGGGGCGGUGGGCCGGCUAGAAGGUCACUGCUGCUUGGCCCGCCUG---
canFam2     GGGUAC--AGGACGGA----U------GGUCGACCAAU-GGAAAGUAAUUGUUGCGAA-GAUGCAUCACC
oryCun1     GG-----------------------------GAACGGGAGGGAAGUAACUGCUCCCAG-UGAAC---UCC
myoLuc1     GGGUAC--AGGAUGGG----U------GGUCGACCAGUUGGAAAGUAAUUGUUUCUAA-UGUACUUCACC
mm9         GGGUAU--GGGACGGA----U------GGUCGACCAGCUGGAAAGUAAUUGUUUCUAA-UGUACUUCACC
pteVam1     GGGUAC--AGGAUGGG----U------GGUCGACCAGUUGGAAAGUAAUUGUUUCUAA-UGUACUUCACC
eriEur1     GGGAG--------GAC----U------GGUCGGCCAGCCGGAAGGUAACAGUCGCUAA-UGGACUUCACC
tarSyr1     GGGUAU-GGGGAUGGA----U------GGUCGACCAGAUGGAAAGUAAUUGUUUCUAA-UGUACUUCACC
loxAfr2     GGGCGC-GGGGAUGGA----U------GGUCGACCAGUUGGAAAGUAAUUGUUUAUAA-UGUACUUCACC
proCap1     GAGCGUGGAGGAUGGA----U------GGUCGACCAGU-GGAAAGUAAUUGUUUAUAA-UGUACUUCACC
echTel1     GGGUAC-GGGGAUGGC----U------GGUCGACCAGUUGGAAAGUAAUUUUUUAUAA-UGUAUUUCACC
SS anno     ((((((...((((((.....(......(((.((((((.((..(((((((((....))).).))))))).)
pair symbol abcdef   ghijkl     m      nop qrstuv wx  yzABCDEFG    GFE D CBAzyxw v

offset      7         8         9         0         1         2         3
FR212011    UGGUCCACUAGCCG-UCCGUAUCCGCUGCAGCCUGUG--GGGC---CU-GC-------------------
ponAbe2     UGGUCCACUAGCCG-UCCGUAUCCGCUGCAGCCUGUG--GGGC---CU-GC-------------------
gorGor1     UGGUCCACUAGCCG-UCCGUAUCCGCUGCAGCCUGUG--GGGC---CU-GC-------------------
rheMac2     UGGUCCACUAGCCG-UCCGUAUCCGCUGCAGCCUGUG--GGGC---CU-GC-------------------
panTro2     UGGUCCACUAGCCG-UCCGUAUCCGCUGCAGCCUGUG--GGGC---CU-GC-------------------
calJac1     UGGUCCACUAGCCG-UCCGUACCCGCUGCAGCCCGCG--GGGC---CU-GC-------------------
micMur1     UGGUCCACUAGCCG-UCCGUACCCACUGCCGCCUGCG--GG-----CC-CA-------------------
otoGar1     UGGUCCACUAGCCG-UCCGUAUCCACUGCAGCCUGCG--CC-----CA--C-------------------
tupBel1     UGGUCCACUCGCCG-UCCGUACCCGCUGCAGCCUGGG--AGGA---CU-GU-------------------
cavPor3     UGGUCCACUAGCCG-UCUGUGCCCACCACAGCCCGCG--A------------------------------
dipOrd1     UGGUCCACUAGCCG-UCGGUGCCCACCGCAGCCUUGG--GGGGGGCCC-UA-AGU-CGCCACUGCAGCCG
rn4         UGGUCCACUAGCCG-UCGGUGCCCGCCGCAGCCUGCG--CC-----AG----------------------
turTru1     UGGUCCACUAGCCG-UCCGUACCCACUGCGGCCUGCG--GGGC---CU-GC-------------------
bosTau4     UGGUCCACUAGCUG-UCCGUACCCACUGCAGCCUGCA--GGGC---CC-AC-------------------
equCab2     UGGUCCACUAGCCG-UCCGUACCCACCGCAGCCUGCG--GG-C---CC-GC-------------------
ochPri2     --G---U----------------AC---------------------------------------------
canFam2     UGGUGCACUAGCCGAUCCGUGUCCACUGGAGCCUGCA--GGGA---CC-GC-------------------
oryCun1     UGGUCCACGGGC-G-UGCGU-CCCGCUGCAGCCGGCG--GC-----GC----------------------
myoLuc1     UGGUCCACUAGCCG-UCCGUAUCCACUGCCGCCUgcg--gc-----ccagc-------------------
mm9         UGGUCCACUAGCCG-UCGGUGCCCGCUGCAGCCUGCG--CC-----C-----------------------
pteVam1     UGGUCCACUAGCCG-UCCGUAUCCACUGCAGCCUGCG--GG-----CC-GC-------------------
eriEur1     UGCUCCACUAGCCG-UCCCUGUCCA---------------------------------------------
tarSyr1     UGGUCCACUAGCCG-UCCAUAUCCACUGCAGCCUGCG--GC-----CU-GC-------------------
loxAfr2     UGGUCCACUAGCCG-UCGGUGCCCACUGCAGCCUGCG--GC-----CC-GCAGGGCC---CUGC------
proCap1     UGGUCCACUAGCCG-UCUGCGCCCACUGCAGCGUGCA--GC-----CC-GU--GGCC---CUGC------
echTel1     UGGUCCACUAGCCA-UCAGUGCCCACUGCAGCCUGCCGGGA-----CC-GCGGGGGC---CCUG------
SS anno     ))))).)))).))).)))))))))..............................................
pair symbol utsrq ponm lkj ihgfedcba                                              

offset      4         5         6         7         8         9         0
FR212011    ---G----GG-C-CGGGG---A----GCCGAU-CGC----GCUUCAGCUCAGCGCCUUUCCUGGUACUUG
ponAbe2     ---G----GG-C-CGGGG---A----GCCGAU-CGC----GCUUCAGCUCAGCGCCUUUCCUGGUACUUG
gorGor1     ---G----GG-C-CGGGG---A----GCUGAU-CGC----GCUUCAGCUCAGCGCCUUUCCUGGUACUUG
rheMac2     ---G----GG-C-CGGGG---A----GCCGAU-CGC----GCUUCAGCUCAGCGCCUU-UCUGGUACUUG
panTro2     ---G----GG-C-CGGGG---A----GCCGAU-CGC----GCUUCAGCUCAGCGCCUUUCCUGGUACUUG
calJac1     ---G----UG-C-CA-GG---A----GCCGAC-CGC----GCUUCAGCUCAGCGCCUUUCCUGGUACUUG
micMur1     ---G----GC-C-CGGG---GA----GCCGAC-CGC----GCCUCAGCUCCGCGCCGUUUCUGGUACUUG
otoGar1     ---A----GG-CCCGGGG-AAA----GCCGAU-UGC----UCCUCAGCUCAGCGCCUUUCCUGGUACUUG
tupBel1     ---G----GG-C-CUGGGGCUA----GCCGAU-AGC----GCCUCAGCUCAGCACCUUUGCUGAUACCUG
cavPor3     ----------------------------------------GCCUCAGCCCGGUGCCUUUCCUGGUAUUUG
dipOrd1     GGCACCUCUG-U-GGGGG-GAG----GGGGCG-GUC----GCUGCAGCUCGGCACCUCGGCUGGUACUUG
rn4         --------------------------GAUGUC-ACU----ACCUCAGCUCGGCACCUCUGCUGGUACUUG
turTru1     ---G----GG-C-CUGGG-CAA----GUCACU-GGC----UUCUCAGCUCAGCGUCUCUCCUGGUACCUG
bosTau4     ---A----GG-C-CGGGG-CAA----GUCACU-GGC----UCCUCAGCUCAGCAUCUCUCCUGGUACCUG
equCab2     ---G----GG-C-CUGGGCCAA----GCUGCC-CAC----UCCUCGGCUCGGCGCCUCUCCUGGUACUUG
ochPri2     -------------------------------------------------------------------CCG
canFam2     ---U----GGGU-CCGGG-C------ACAUGA-CGA----UCCUUCGCUCAGCAACUCUCCUGGUACUUG
oryCun1     ------------------------------GG--GC--------------GCAGCCUCUCCGGGUACCUG
myoLuc1     ---c----gg-g-cgc-----g----gcc-gc-cgc----c-ccgcgcUCAGCACCUCUGCUGGUACCUG
mm9         -----------------------------AGGAUGUCACAGCCUCAGCUCAACACCUCUGCUGGUACUUG
pteVam1     ---G----GG-C-CGGGC-AGA----GCC-GC-UGC----CCCUCCGCUCAGCACCUGUCCUGGUACUUG
eriEur1     -------------------------------------------------------------------CUG
tarSyr1     ---G----GG-C-CAGG---------GCCAGG-UGC----ACCCCAGCUCAGCACCUCGCCUGGUACUUG
loxAfr2     ---C----GC-C-CUGGG-GAA----UCCGGG-UGC----GCCUCAGCUCA-CGCCUUUCCUGGUACCUG
proCap1     ---C----GC-C-CCGGG-GAA----GCCGGG-UGC----UUCUCAGCUCAGCGCCUUUCCUGGUACGUG
echTel1     ---C----GC-C-CUGGG-GAUGCCUGGACGG-AGC----GCCUCUGCUCAGCGCCGUUCCUGGUACUUA
SS anno     .............................................................(((((((.(
pair symbol                                                              abcdefg h

offset      1         2         3         4         5         6         7
FR212011    AAGGGAGAUCGACC-GUGUUAUAUUCGCUUUAUUGACUUCGAAUAAUACAUGGUU---------------
ponAbe2     AAGGGAGAUCGACC-GUGUUAUAUUCGCUUUAUUGACUUCGAAUAAUACAUGGUU---------------
gorGor1     AAGGGAGAUCGACC-GUGUUAUAUUCGCUUUAUUGACUUCGAAUAAUACAUGGUU---------------
rheMac2     AAGGGAGAUCGACC-GUGUUAUAUUCGCUUUAUUGACUUCGAAUAAUACAUGGUU---------------
panTro2     AAGGGAGAUCGACC-GUGUUAUAUUCGCUUUAUUGACUUCGAAUAAUACAUGGUU---------------
calJac1     AAGAGAGAUCGACC-GUGUUAUAUUCGCUUUGUUGAUUUCGAAUAAUACAUGGUU---------------
micMur1     AAGGGAGAUCGACC-GUGUUAUAUUCGCUUUAUUGGCUUCGAAUAAUACAUGGUU---------------
otoGar1     AAGGGAGAUCGACC-GUGUUAUAUUCGCUUUAUUGACUUCGAAUAAUACAUGGUU---------------
tupBel1     AAGAGAGAUCGACC-GUGUUAUAUUCGCUUUAUUGACUUCGAAUAAUACAUGGUU---------------
cavPor3     AUGGGAGAUCGACC-GUGUUAUAUUCGCUUCCUUGACUUCGAAUAAUACAUGGUU---------------
dipOrd1     AAGGGAGAUCGACU-GUGUUAUAUUCGCAGUACUGACUUCGAAUAAUACAUGGUU---------------
rn4         AAGGGAGAUCGACC-GUGUUAUAUUCGCUUAGCUGACUUCGAAUAAUACAUGGUU---------------
turTru1     AAGGGAGAUCGACC-GUGUUAUAUUCGCUUUAUUGACUUCGAAUAAUACAUGGUU---------------
bosTau4     AAGGGAGAUCGACC-GUGUUAUAUUCGCUUUAUUGACUUCGAAUAAUACAUGGUU---------------
equCab2     AAGGGAGAUCGACC-GUGUCAUAUUCGCUUUAUUGACUUCGAAUAAUACAUGGUU---------------
ochPri2     AAGGGAGAGAGACC-GCGUGCUGCUCGCAUCCUUGGCCUG---CAACACAUGGCC---------------
canFam2     AAGGGAGUUCGACC-GUGUUAUAUUCGCUUUAUUGACUUCGAAUAAUACAUGGUU---------------
oryCun1     AAGGGAGAUCGACC-GUGUUCCAUUCGCUCCGCUGACUUCGAAUAAUAGAUGGUU---------------
myoLuc1     AAGGGAGAUCGACC-GUGUUAUAUUCGCUUUCUUGACUUCGAAUAAUACAUGGUU---------------
mm9         AAGGGAGAUCGACC-GUGUUAUAUUCGCUUGGCUGACUUCGAAUAAUACAUGGUU---------------
pteVam1     AAGGGAGAUCGACC-GUGUUAUAUUCGCUUUAUUGACUUCGAAUAAUACAUGGUU---------------
eriEur1     CAGCccggggggccagg---gggcccggauguaggccggg---ggccacuccggccggccuucuggugca
tarSyr1     AAGGGAGAUCGACC-GUGUUAUAUUCGCUUUAUUGACUUCGAAUAAUACAUGGUU---------------
loxAfr2     AAGGGAGAUCGACC-GUGUUAUAUUCGCUUUCUUCACUUCGAAUAAUACAUGGUU---------------
proCap1     AAGAGAGAUCGACC-GUGUUAUAUUCGCUUUCUUGAC-UCGAAUAAUACAUGGUU---------------
echTel1     AAGGGAGAUCGACC-GUGUUAUAUUCGUUUUCUUGACUUCGAAUAAUACAUGGUU---------------
SS anno     (.((((((((((((.((((..((((((............))))))..))))))))...............
pair symbol i jklmnopqrstu vwxy  zABCDE            EDCBAz  yxwvutsr               

offset      8         9         0         1         2
FR212011    G-----AUCUUUUC----UCAG---UAUCAAAUC-----UCACCUUGGAG
ponAbe2     G-----AUCUUUUC----UCAG---UAUCAAAUC-----UCACCUUGGAG
gorGor1     G-----AUCUUUUC----UCAG---UAUCAAAUC-----UCACCUUGGAG
rheMac2     G-----AUCUUUUC----UCAG---UAUCAAAUC-----UCACCUUGGAG
panTro2     G-----AUCUUUUC----UCAG---UAUCAAAUC-----UCACCUUGGAG
calJac1     G-----AUCUUUUC----UCAG---UAUCAAAUC-----UCACCUUGGAG
micMur1     G-----AUCUUUUC----UCAG---UAUCAAAUC-----UCACCUUGGAG
otoGar1     G-----AUCUUUUC----UCAG---UAUCAAAUC-----UCACCCUGGAG
tupBel1     G-----AUCUUUUC----UCAG---UAUCAAAUC-----UCACCUUG-AG
cavPor3     G-----AUCUUUUC----UCAG---UACCAAAUC-----UCACCUUGGAG
dipOrd1     G-----AUCUUUUC----UCAG---UAUCAACGU-----UCACCUUGGAG
rn4         G-----AUCUUUUC----UCAG---UAUCAAUGC-----UCAGCUUGGAG
turTru1     G-----AUCUUUUC----UCAG---UAUCAAAUC-----UCACCUUGGAG
bosTau4     G-----AUCUUUUC----UCAG---UAUCAAAUC-----UCACCUUGGAG
equCab2     G-----AUCUUUUC----UCGG---UAUCAAAGC-----UCACCUCGGAG
ochPri2     C-----GUCUUUCU----UCAG---CAUCGGUUU-----UCACCCGGAAG
canFam2     G-----GUCUUUUC----UCAA---UAUCAUAUC-----UCACCCUGGAG
oryCun1     G-----AUCUUUCC----UCGG---UAUCAAUUC-----UCACCCGGAGG
myoLuc1     G-----AUCUUUUC----UCAG---UAUCAAAUC-----GCACCUCGGAG
mm9         G-----AUCUUUUC----UCAG---UAUCAACGC-----UCAGCUUGGAG
pteVam1     G-----AUCUUUUC----UCAG---UAUCACAUC-----UCACCUUGGAG
eriEur1     ugaugggagaUCAACCAUA-CUUGCUC----UUGCCUUCGAA---UAACA
tarSyr1     G-----AUCUUUUC----UCAG---UAUCAAAUC-----ACACCUUGGAG
loxAfr2     G-----AUCUUUCC----UCAG---UAUCAAAUC-----UCACCUUGGAG
proCap1     G-----AUCUUUUC----UCAG---UAUCAAAUC-----UCACCUGGCGG
echTel1     G-----AUCUUUUC----UCAG---UAUCGCAUC-----GCACCUUGGAG
SS anno     ).....))))))).....))))...)))))....................
pair symbol q     ponmlkj     ihgf   edcba                    

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