FR213708

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  • Summary
  • Sequence
  • Secondary Structure
Evidence Mapping [blat]
blat with identity=99, coverage=90 and no-repeat
Evidence Sequence Similarity [highly similar]
Almost same sequences with one mismatch or one gap
Summary
ID FR213708
Description C/D box guide small nucleolar RNA (snoRNA) SNORD78 / U78
Accession AF141346
Sequence Ontology C_D_box_snoRNA
Organism
Homo sapiens human , man
Genome Mapping
human(hg18)           1 region chr1:172101383-172101447(-) 
Cross Reference
Rfam v8.1 RF00592
Gene Association / Sense Overlap / 5'UTR
human(hg18) NR_003944 (uc009wwl.1 )
Gene Association / Sense Overlap / Intron
human(hg18) BC038733 (uc001gjk.1 ), NR_002578 (uc001gjj.1 ), CR623807 (uc001gji.1 )
Sequence Similarity
highly similar FR323688   C/D box guide small nucleolar RNA (snoRNA) SNORD78 / U78

OMIM
IDTitleLocus
608280  GROWTH ARREST-SPECIFIC 5; GAS5 1q23.3(chr1:158800001-163800000)

MicroArray / Affymetrix GeneChip Exon Array / hg18
ProbeTranscript ClusterProbe Locus
6169947 2444451  chr1:172101387-172101411(-) 
5474479 2444451  chr1:172101395-172101419(-) 
1114035 2444451  chr1:172101411-172101435(-) 
686333 2444451  chr1:172101415-172101439(-) 

Reference
snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs.
Lestrade L. and Weber MJ.
Nucleic Acids Res 34 (Database issue), D158-62 (2006)
Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa.
Tycowski KT.,Aab A. and Steitz JA.
Curr Biol 14 (22), 1985-95 (2004)

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