FR223715

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  • Summary
  • Sequence
  • Secondary Structure

Evidence Secondary Structure [putative(CentroidAlign)]
Putative secondary structure predicted by CentroidAlign.

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offset      0         1         2         3         4         5         6
FR223715    AUGUCC-UGAAUGGAAGGAUCC-CUUUGGGAAAUUCUCAGGAGGGGGACCUGG-GCCA---AGGGCUUGG
calJac1     AUGUCC-UAAAUGGAAGGAUCC-CUUUGGGAAUUUCUCAGGAGGGGGACCUGG-GCCG---AGGGCUUGA
rheMac2     AUGUCU-UGAAUGGAAGGAUCC-CUUUGGGAACUUCUCAGGAGGGGGACCUGG-GCCA---AGGGCUUGA
ponAbe2     -------UGAAUGGAAGGAUCC-CUUUGGGAAAUUCUCAGGAAGGGGACCUGG-GCCA---AGGGCUUGA
tarSyr1     AUGUCC-UGUAUGGAAGGAC-C-CUUUGGGAACCUCUCAGGAGUGGGGUCUGG-GUCA---GGGGCCUGG
micMur1     ACGUCC-UGAAUUGAAGGAUCC-UUUUGGAAUUUUCUCAGGAGGGGGACCUGG-GCCA---AGGGCUUGA
gorGor1     AUGUCC-UGAAUGGAAGGAUCC-CUUUGGGAAAUUCUCAGGAGGGGGACCUGG-GCCA---AGGGCUUGG
otoGar1     AUGUCC-AAAAUGGAAGGAUCU-GUUUGAGAACUUCUCAGGAGGGGGACCUGG-GCCA---AGGGCUUGA
panTro2     AUGUCC-UGAAUGGAAGGAUCC-CUUUGGGAAAUUCUCAGGAGGGGGACCUGG-GCCA---AGGGCUUGG
dipOrd1     ACGUCC-UGAGUGGAAGGAUCC-CUUUGGGAGCCCCUCAGGAGGGGGACCUGG-GCCA---AGGGCAGG-
rn4         AUGUCC-UGAGCAGAAGGGUCCCCAAUGGGAACCUCUCAGGAGGGGGGUUUGG-GGCGGCGGGGGGGGGA
mm9         AUGUCC-UGAGCAAAAGGGUCC-CUUUGGGAACCUCUCAGGAGGGGGACCCGG-GUCA---GGGGC--GA
bosTau4     AUGGUC-UGAAAGGAAGGGUCC-CUUUGGGAACUUCUCAGGAGGGAGACCUGG-GCCA---AGGGCUCGG
turTru1     AUGUUC-UGAAUGGAAGAGUCC-CUGUGGGAACUUCUCAGGAGGGGGACCUGG-GCCA---AGGGCUUGA
vicPac1     AUGUCC-UGAAUGGAAGGGUCC-CUUUGGGAACUUCUCAGGAGGGGGACCUGG-GCCA---AGGGCUCAA
equCab2     AUGUCC-UGAACGGAAAGAUCC-CUUUGGGAACUCCUCAGGAGGGGGACCUAG-GCCA---GAGGCUCCU
felCat3     ACGUCC-UGAACGGAAGGAUCC-CUUCGGGAACUUCUCAGGAGGGGGACCUGG-GCCA---GGGGCUCGA
canFam2     AUGGCC-UGAACGGAAGGAUCC-CUUUGGGAACUUCUCAGGAGGGGGACCUGG-GCCA---AGGGCUUGA
myoLuc1     AUGUCC-UGAAUAGAAGGAUCC-CUUUGGGAACUUCUCAGGAGGGGGACCUGG-GCCA---AGGGCUCCG
proCap1     AUGUAAUUGGAUGAAAAGACCC-UUUUGGGAACUUCUCAGGAGGGGGACCGGGGGCCA---AUAGCUUGA
pteVam1     AUGUCC-UGAAUGGAAAGAUCC-CUUUGGGAACUUCUCAGGAGGGGGACCUGG-GCCA---AGGGCUCCA
loxAfr2     AUGCCC-UAGAGGGAAGGACCC-CUUUGGGAACUUCUCAAGAGUGGGACCUGG-GCCA---AUAGCUUGA
echTel1     -----------UGGAAGGAUCC-CUCUGGGAAUUUCUCAGGAGGGGGACCUGG-GCCC---AGAGCAUGG
SS anno     ...........................((.......))..........(((((.(((.....(((.(((.
pair symbol                            ab       ba          abcde fgh     ijk lmn 

offset      7         8         9         0         1
FR223715    CCAGCAUCCUGCUGGCAACUCCAAGGCCCUGGGUGGG------------CUUC
calJac1     CCAGCAUCUUGCUGGCAACUCCAAGGCCCUGGGUGGG------------CUUC
rheMac2     CCAGCAUCCUGCUGGCAACUCCAAGGCCCUGGGUGGG------------CUUC
ponAbe2     CCAGCAUCCUGCUGGCAACUCCAAGGCCCUGGGUGGG------------CUUC
tarSyr1     CCAGCACCUCACUGGUAAUUCCAAGGCACUAG-U-GG------------CUUC
micMur1     CCCGCUUCUCCCUGGCAGUUCCAAGCCCCUGGGUGGG------------UGUC
gorGor1     CCAGCAUCCUGCUGGCAACUCCAAGGCCCUGGGUGGG------------CUUC
otoGar1     CAAACAUCUCACUGGCAAUUCCAAGGCCCUGGGUGGG------------CUUC
panTro2     CCAGCAUCCUGCUGGCAACUCCAAGGCCCUGGGUGGG------------CUUC
dipOrd1     --------UUGCUGGCAA--------CCUGGGGUGGG------------CUUC
rn4         CCAGCAUCUUGCUGGCAACUGUGGGUGGGGUGGGGUG--------CUUCCUUC
mm9         CCAGCAUCUUGCUGGCAACUCCGUgg-guggggugggguggggugCUUCCUUC
bosTau4     CCAGCAUCUCCCUGGCAAUUCCAAGGCCCAGGGUGGG------------CUUC
turTru1     CCAGCAUCUCACUGGCGAUUCCAAGGCCCAGGGUGGG------------CUUC
vicPac1     CCAGCAUCUCACUGGCAAUUCCAAGGCCC-GGGUGGG------------CUUC
equCab2     CUAGCAUCUCACUGGCGAUUCCAAGGCCCAGGGUGGG------------CUUG
felCat3     CCAGCAUCUCACUGGCAAUUCCAAGGCCCAUGGUGGG------------CUUC
canFam2     CCAGCAUCUCACUGGCAAUUCCAAGGCUCAGGGUGGG------------CUUC
myoLuc1     CCAGCAUCUCACUGGCAAUUCCAAAG-CCGUGGUGGG------------CUUC
proCap1     CCAGCAUCUUGCUGGCAAUUCCAGGGACC-CGG--------------------
pteVam1     CCAGCAUCUCACUGGCAAUUCCAAGGCCC-AGGUGGG------------CUUC
loxAfr2     CCAGCAUCUUGCUGGCAAUUCC-AGGGCCCCGCUGGG------------CUUC
echTel1     CCAGCCUUUUGCUGGCGACCC--AGGCCCACUGUGGG------------UGUC
SS anno     (((((.....)))))))).)))..))))).)))....................
pair symbol opqrs     srqponml kji  hgfed cba                    

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