FR244175

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  • Summary
  • Sequence
  • Secondary Structure

Evidence Secondary Structure [putative(CentroidAlign)]
Putative secondary structure predicted by CentroidAlign.

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offset      0         1         2         3         4         5         6
FR244175    CCCC----C----ACCUCAGCAGA---------------GCUG--CGUCUUUGUGCUUUCAGCUUCUUUA
ochPri2     -CCC----C----GCCUCGGCAGA---------------GCUG--CGUCUUGGUGCUUUCAGCUUCUUUA
vicPac1     CCCCCUUCU----ACUGCAGCAGA---------------GCUG----UCUUUGUGCUUUCAGCUUCUUUA
oryCun1     CCCC----C----ACCUCAGCAGA----------------CUG--CGUCUUCGUGCUUUCAGCUUCUUUA
turTru1     CCUC----C----ACUGCAGCAGA---------------GCUG----UCUUUGUGCUUUCAGCUUCUUUA
speTri1     CCUC----U----ACUUCAGCAGA---------------GCUG--CGUCUUUGUGCUUUCAGCUUCUUUA
bosTau4     CUCC----CGCUGACCGCAGCAGA---------------GCUG----UCUUUGUGCUUUCAGCUUCUUUA
mm9         UCUC----C----ACCUCAGCAGA---------------GCUG----UCUUCGUGCUUUCAGCUUCUUUA
equCab2     CCUC----C----ACCGCAGCAGA---------------GCUG--UGUCUUCGUGCUUUCAGCUUCUUUA
rn4         UCUC----C----ACCUCAGCAGA---------------GCUG----UCUUCGUGCUUUCAGCUUCUUUA
canFam2     CAUC----C----ACCGCCGCAGA---------------GCUG----UCUUUGUGCUUUCAGCUUCUUUA
dipOrd1     CCUC----C----AUCUCAGCAGA---------------GCUA----UCUUUGUGCUUUCAGCUUCUUUA
myoLuc1     CCUC----C----ACCGCAGCAGA---------------GCUG----UCUUUGUGCUUUCAGCUUCUUUA
otoGar1     -CUU----C----ACCUCUGCAGA---------------GCUG--CGUCUUUGUGCUUUCAGCUUCUUUA
pteVam1     CCUC----C----ACUGCAGUAGA---------------ACUG----UCUUUGUGCUUUCAGCUUCUUUA
micMur1     -CUC----C----ACCUCAGCAGA---------------GCUG--UGUCUUUGUGCUUUCAGCUUCUUUA
eriEur1     CUCC----C----ACUGCAGCAGA---------------GCUG----UCUUUGUGCUUUCAGCUUCUUUA
tarSyr1     CCUC----C----ACCCCAGCAGA---------------GCUG--UGUCUUCGUGCUUUCAGCUUCUUUA
sorAra1     -CUC----C----ACUGCAGCCGA---------------GCU----GUCUUGGUGCUUUCAGCUUCUUUA
calJac1     ACCC----C----ACCUCAGCAGA---------------GCUG--CGUCUUUGUGCUUUCAGCUUCUUUA
rheMac2     CCCC----C----ACCUCAGCAGA---------------GCUG--UGUCUUUGUGCUUUCAGCUUCUUUA
proCap1     CCUC----C----UGCUCUGCAGA---------------GCUG--CAUCUUUGUGCUUUCAGCUUCUUUA
loxAfr2     CCUC----C----AGCUCUGCUGA---------------GCUG--CAUCUUGGUACUUUCAGCUUCUUUA
ponAbe2     CCCC----C----ACCUCAGCAGA---------------GCUG--UGUCUUUGUGCUUUCAGCUUCUUUA
gorGor1     CCCC----C----ACCUCAGCAGA---------------GCUG--CGUCUUUGUGCUUUCAGCUUCUUUA
choHof1     CUCC----A----GCCUCAGCAGA---------------GCUG--CUUCUUUGUGCUUUCAGCUUCUUUA
panTro2     CCCC----C----ACCUCAGCAGA---------------GCUG--CGUCUUUGUGCUUUCAGCUUCUUUA
monDom4     -------------------------------------------------------CUUUCAGCUUCUUUA
cavPor3     CCUC----C-----GCUCAGCAGA---------------GCUAUUUGUCUUUGUGCUUUCAGCUUCUUUA
xenTro2     -------------------GCUGA---------------AUUG---UGCUCUGUGCUUUCAGCUUCUUUA
anoCar1     CUAA----C----AGUUAUGccaaaaagagaaggaaacaaaUA---CUCUUCGUGCUUUCAGCUUCUUUA
tetNig1     -------------------GCAGG---------------GCUG-UUGCCUCCCUGCUCUCAGCCUCUUUA
danRer5     -----------------------------------------------UCUGUGUGCUCUGAGCUUCUUUA
petMar1     UUUC----C----AGGUCACCCCUGCCGUGCUACUUG--CUUC-CUUCCCCGCUCCUUUCAGCCUCUCUA
SS anno     ...............................................((((.((.(((((((((.((.((
pair symbol                                                abcd ef ghijklmno pq rs

offset      7         8         9         0         1         2         3
FR244175    CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAAUGGG
ochPri2     CAGUGCUGCCUUGUAGCA----UUCGGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAAUGGG
vicPac1     CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACUGAGAAUGGC
oryCun1     CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAACGCG
turTru1     CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACUAAGAAUGAC
speTri1     CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAAUGGG
bosTau4     CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACUAAGAAUGGC
mm9         CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAAUGGG
equCab2     CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAAUGGC
rn4         CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAAUGGG
canFam2     CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCGAGAAUGGC
dipOrd1     CAGUGCUGCCUUGUAGCA----UUUGGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAAUGGG
myoLuc1     CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAAUGGC
otoGar1     CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAAUAGG
pteVam1     CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAAUGGC
micMur1     CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAAUGGG
eriEur1     CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAAAGGC
tarSyr1     CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAAUGGG
sorAra1     CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAGUGGC
calJac1     CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAAUGGG
rheMac2     CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAAUGGG
proCap1     CAGUGCUGCCUUGUAGCA----UUCAGAUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAAUGGG
loxAfr2     CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAAUGAG
ponAbe2     CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAAUGGG
gorGor1     CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAAUGGG
choHof1     CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAAUGGG
panTro2     CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAAUGGG
monDom4     CAGUGCUGCCUUGUUGCA----UUGAUGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAUGGGU
cavPor3     CAGUGCUGCCUUGUAGCA----UUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAGAAUGGG
xenTro2     CAGUGCUGCCUUGUAGCA----UCUAUGUCAAGCAGCAUUGUACAGGGCUAUGAAGGAGCAGAGAUC---
anoCar1     CAGUGCUGCCUUGUUGCA----ACCAUGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACCAAG------
tetNig1     CGGUGCUGCCUUGUGGCA----UCUUGAUCAAGCAGCAUUGUACAGGGCUAUGAAGGCGUGGAGGACAUG
danRer5     CAGUGUUGUCUUGUGGCA----UGGAGAUCAAGCAGCAUUGUACAGGGCUAUCACAGCACACUGAACAGC
petMar1     UGGUGCUGCCUUGUGUCAAACCUGCGUGUCAAGCAGCAUCGUACAGGGCUUGGAAAGUGUCGGGGGC---
SS anno     (((((((((.(((................)))))))))))))).)))))..)))))).)).)))).....
pair symbol tuvwxyzAB CDE                EDCBAzyxwvutsr qponm  lkjihg fe dcba     

offset      4         5
FR244175    CUGCCCUU-----
ochPri2     CUGCCCUU-----
vicPac1     CUUCCCUG-----
oryCun1     C---CCGG-----
turTru1     CUUCCCUU-----
speTri1     CUGCCCUU-----
bosTau4     CUUCCCUU-----
mm9         CUGCCCUU-----
equCab2     CGUCCGCU-----
rn4         CUGCCCUU-----
canFam2     CUUCCCU------
dipOrd1     CUGCACUG-----
myoLuc1     CUUCCCUU-----
otoGar1     CUGCCCUU-----
pteVam1     CUUCCCGU-----
micMur1     CUGCCCUU-----
eriEur1     CUUCCCUU-----
tarSyr1     CUGCCCUU-----
sorAra1     CUUCCCGU-----
calJac1     CUGCCCUU-----
rheMac2     CUGCCCUU-----
proCap1     CUGCCCUU-----
loxAfr2     CUGCCCUU-----
ponAbe2     CUGCCCUU-----
gorGor1     CUGCCCUU-----
choHof1     CUUCCUUU-----
panTro2     CUGCCCUU-----
monDom4     CUUCACUUCAUUU
cavPor3     CUGCCCUU-----
xenTro2     ---CACUG-----
anoCar1     -------------
tetNig1     CGCACCUU-----
danRer5     CGGCUCUU-----
petMar1     -------C-----
SS anno     .............
pair symbol              

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