fRNAdb - Detail Page [FR266871]

FR266871

Summary
Sequence
Secondary Structure

Evidence Mapping [blat]

blat with identity=99, coverage=90 and no-repeat

Summary
ID	FR266871
Description	H/ACA box guide small nucleolar RNA (snoRNA) ACA48 / SNORA48
Accession	AC016876 , AJ609447
Sequence Ontology	H_ACA_box_snoRNA
Organism
Homo sapiens	human , man
Genome Mapping
human(hg18) 1 region	chr17:7418755-7418889(+)
Cross Reference
Rfam v8.1	RF00554
NONCODE v1.0	u3312
snoRNA-LBME-db release3	ACA48
RNAdb v2.0	SNO1521
Gene Association / Sense Overlap / Intron
human(hg18)	EIF4A1 (uc002gho.1 , uc002ghp.1 , uc002ghq.1 , uc002ghr.1 )
Gene Association / Sense Overlap / 3'UTR
human(hg18)	NR_002918 (uc002ghs.1 )
Gene Association / Transcription Neighbor / upstream
human(hg18)	NR_002912 (uc010cml.1 ), NR_002604 (uc002ght.1 )
Sequence Similarity

OMIM
ID	Title	Locus
602641	EUKARYOTIC TRANSLATION INITIATION FACTOR 4A, ISOFORM 1; EIF4A1 DDX2A	17p13(chr17:1-11200000)

MicroArray / Affymetrix GeneChip Exon Array / hg18
Probe	Transcript Cluster	Probe Locus
3770010	3708826	chr17:7418841-7418865(+)
5147533	3708826	chr17:7418842-7418866(+)
2080555	3708826	chr17:7418844-7418868(+)
4354046	3708826	chr17:7418846-7418870(+)

MicroArray / Invitrogen Ncode Noncoding RNA Array / hg18
Probe	Target Transcript	Probe Locus
IVGNh30518	UC002GHS	chr17:7418794-7418854(+)

Reference
snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. Lestrade L. and Weber MJ. Nucleic Acids Res 34 (Database issue), D158-62 (2006) RNAdb--a comprehensive mammalian noncoding RNA database. Pang KC.,Stephen S.,Engström PG.,Tajul-Arifin K.,Chen W.,Wahlestedt C.,Lenhard B.,Hayashizaki Y. and Mattick JS. Nucleic Acids Res 33 (Database issue), D125-30 (2005) NONCODE: an integrated knowledge database of non-coding RNAs. Liu C.,Bai B.,Skogerbø G.,Cai L.,Deng W.,Zhang Y.,Bu D.,Zhao Y. and Chen R. Nucleic Acids Res 33 (Database issue), D112-5 (2005) Human box H/ACA pseudouridylation guide RNA machinery. Kiss AM.,Jády BE.,Bertrand E. and Kiss T. Mol Cell Biol 24 (13), 5797-807 (2004) Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes. Gaspin C.,Cavaillé J.,Erauso G. and Bachellerie JP. J Mol Biol 297 (4), 895-906 (2000) Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts. Ofengand J. and Bakin A. J Mol Biol 266 (2), 246-68 (1997) The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. Balakin AG.,Smith L. and Fournier MJ. Cell 86 (5), 823-34 (1996)

Reference

snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs.
Lestrade L. and Weber MJ.
Nucleic Acids Res 34 (Database issue), D158-62 (2006)

RNAdb--a comprehensive mammalian noncoding RNA database.
Pang KC.,Stephen S.,Engström PG.,Tajul-Arifin K.,Chen W.,Wahlestedt C.,Lenhard B.,Hayashizaki Y. and Mattick JS.
Nucleic Acids Res 33 (Database issue), D125-30 (2005)

NONCODE: an integrated knowledge database of non-coding RNAs.
Liu C.,Bai B.,Skogerbø G.,Cai L.,Deng W.,Zhang Y.,Bu D.,Zhao Y. and Chen R.
Nucleic Acids Res 33 (Database issue), D112-5 (2005)

Human box H/ACA pseudouridylation guide RNA machinery.
Kiss AM.,Jády BE.,Bertrand E. and Kiss T.
Mol Cell Biol 24 (13), 5797-807 (2004)

Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes.
Gaspin C.,Cavaillé J.,Erauso G. and Bachellerie JP.
J Mol Biol 297 (4), 895-906 (2000)

Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts.
Ofengand J. and Bakin A.
J Mol Biol 266 (2), 246-68 (1997)

The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions.
Balakin AG.,Smith L. and Fournier MJ.
Cell 86 (5), 823-34 (1996)

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