FR325836

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  • Summary
  • Sequence
  • Secondary Structure
Evidence Mapping [blat]
blat with identity=99, coverage=90 and no-repeat
Evidence Sequence Similarity [highly similar]
Almost same sequences with one mismatch or one gap
Summary
ID FR325836
Description C/D box small nucleolar RNA (snoRNA)
Accession X94598
Sequence Ontology C_D_box_snoRNA
Organism
Homo sapiens human , man
Genome Mapping
human(hg18)           1 region chr19:54685037-54685113(+) 
Cross Reference
NONCODE v1.0 u5053
Gene Association / Sense Overlap / Intron
human(hg18) RPL13a (uc002pnz.1 , uc002poa.1 ), RPL13A (uc002pny.1 )
Gene Association / Sense Overlap / 3'UTR
human(hg18) NR_000021 (uc010emy.1 )
Gene Association / Transcription Neighbor / upstream
human(hg18) NR_000019 (uc010ena.1 ), NR_000020 (uc010emz.1 ), NR_003932 (uc010enc.1 ), NR_000018 (uc010enb.1 )
Sequence Similarity
highly similar FR168467   C/D box guide small nucleolar RNA (snoRNA) SNORD32A / U32A

MicroArray / Affymetrix GeneChip Exon Array / hg18
ProbeTranscript ClusterProbe Locus
4355906 3838575  chr19:54685037-54685061(+) 

Reference
NONCODE: an integrated knowledge database of non-coding RNAs.
Liu C.,Bai B.,Skogerbø G.,Cai L.,Deng W.,Zhang Y.,Bu D.,Zhao Y. and Chen R.
Nucleic Acids Res 33 (Database issue), D112-5 (2005)
Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes.
Gaspin C.,Cavaillé J.,Erauso G. and Bachellerie JP.
J Mol Biol 297 (4), 895-906 (2000)
The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions.
Balakin AG.,Smith L. and Fournier MJ.
Cell 86 (5), 823-34 (1996)

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