fRNAdb - Detail Page [FR326137]

FR326137

Summary
Sequence
Secondary Structure

Evidence Mapping [EvoFold]

extracted from EvoFold track on Genome Browser@hg18

Summary
ID	FR326137
Description	Putative conserved noncoding region (EvoFold)
Accession
Sequence Ontology	nc_conserved_region
Organism
Homo sapiens	human , man
Genome Mapping
human(hg18) 1 region	chr22:18400669-18400736(+)
Cross Reference
RNAdb v2.0	EVF48033
Gene Association / Sense Overlap / Intron
human(hg18)	C22orf25 (uc002zrb.1 , uc002zrc.1 , uc002zre.1 , uc002zrf.1 , uc010grw.1 ), DKFZp761P1121 (uc002zrd.1 , uc010grx.1 )
Sequence Similarity

MicroArray / Affymetrix GeneChip Exon Array / hg18
Probe	Transcript Cluster	Probe Locus
6225148	3937130	chr22:18400678-18400702(+)
3493980	3937130	chr22:18400680-18400704(+)
765002	3937130	chr22:18400687-18400711(+)

Reference
Identification and classification of conserved RNA secondary structures in the human genome. Pedersen JS.,Bejerano G.,Siepel A.,Rosenbloom K.,Lindblad-Toh K.,Lander ES.,Kent J.,Miller W. and Haussler D. PLoS Comput Biol 2 (4), e33 (2006) RNAdb--a comprehensive mammalian noncoding RNA database. Pang KC.,Stephen S.,Engström PG.,Tajul-Arifin K.,Chen W.,Wahlestedt C.,Lenhard B.,Hayashizaki Y. and Mattick JS. Nucleic Acids Res 33 (Database issue), D125-30 (2005)

Reference

Identification and classification of conserved RNA secondary structures in the human genome.
Pedersen JS.,Bejerano G.,Siepel A.,Rosenbloom K.,Lindblad-Toh K.,Lander ES.,Kent J.,Miller W. and Haussler D.
PLoS Comput Biol 2 (4), e33 (2006)

RNAdb--a comprehensive mammalian noncoding RNA database.
Pang KC.,Stephen S.,Engström PG.,Tajul-Arifin K.,Chen W.,Wahlestedt C.,Lenhard B.,Hayashizaki Y. and Mattick JS.
Nucleic Acids Res 33 (Database issue), D125-30 (2005)

Evidence :

Evidence Secondary Structure [putative(EvoFold)]

Putative secondary structure predicted by EvoFold.

Click here to view the PDF file.

0         1         2         3         4         5         6
GAGGGAUUGGAGAGAAAGGCAGUUCCUGAUGGUCCCCUCCCCAGGGGCUGGCUUUCCUCUGGUCCUUC
((((((((((((.(((((.(((((((((.............))))))))).)))))))))))))))))

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