fRNAdb - Detail Page [FR336849]

FR336849

Summary
Sequence
Secondary Structure

Evidence Mapping [blat]

blat with identity=99, coverage=90 and no-repeat

Summary
ID	FR336849
Description	Selenocysteine insertion sequence
Accession	AL031427 , BC017955 , S48220
Sequence Ontology	SECIS_element
Organism
Homo sapiens	human , man
Genome Mapping
human(hg18) 1 region	chr1:54149235-54149292(+)
Cross Reference
Rfam v8.1	RF00031
Gene Association / Sense Overlap / 3'UTR
human(hg18)	DIO1 (uc001cvz.1 , uc001cwa.1 , uc001cwb.1 , uc001cwc.1 , uc001cwd.1 , uc001cwe.1 , uc001cwf.1 , uc001cwg.1 , uc009vzl.1 )
Sequence Similarity

OMIM
ID	Title	Locus
147892	DEIODINASE, IODOTHYRONINE, TYPE I; DIO1 THYROXINE DEIODINASE, TYPE I; TXDI1 HYPERTHYROXINEMIA DUE TO DECREASED PERIPHERAL CONVERSION OF T4, INCLUDED 5-PRIME-@DEIODINASE DEFICIENCY, GENERALIZED, CAUSING EUTHYROID HYPERTHYROXINEMIA, INCLUDED	1p33-p32(chr1:46500001-60900000)

MicroArray / Affymetrix GeneChip Exon Array / hg18
Probe	Transcript Cluster	Probe Locus
6045068	2336891	chr1:54149248-54149272(+)

Reference
A survey of metazoan selenocysteine insertion sequences. Lambert A.,Lescure A. and Gautheret D. Biochimie 84 (9), 953-9 (2002) A novel RNA structural motif in the selenocysteine insertion element of eukaryotic selenoprotein mRNAs. Walczak R.,Westhof E.,Carbon P. and Krol A. RNA 2 (4), 367-79 (1996)

Evidence :

Evidence Secondary Structure [putative(Rfam)]

Putative secondary structure predicted by Rfam.

Click here to view the PDF file.

0         1         2         3         4         5
UAUUUGUUUAUGAUGGCCACAGCCUAAAGUACACACGGCUGUGACUUGAUUCAAAAGA
(((((.....((((((((((((((....(((..)))))))))))))))))...)))))

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