FR346925

[Return]
  • Summary
  • Sequence
  • Secondary Structure
Evidence Mapping [H-invitational v6.0]
extracted from H-invitational v6.0
Summary
ID FR346925
Description non-protein coding (noncoding) transcript
Accession S66902
Sequence Ontology ncRNA
Organism
Homo sapiens human , man
Genome Mapping
human(hg18)           1 region chr1:165635188-165647869(+) 
Cross Reference
RNAdb v2.0 HIV1154
H-invitational v5.0 HIT000216140
Gene Association / Sense Overlap / Exon
human(hg18) POU2F1 (uc001gec.1 , uc001ged.1 , uc001gee.1 , uc001gef.1 , uc001geg.2 )
Gene Association / Sense Overlap / Intron
human(hg18) POU2F1 (uc001gec.1 , uc001ged.1 , uc001gee.1 , uc001gef.1 , uc001geg.2 , uc009wvg.1 )
Gene Association / Sense Overlap / 3'UTR
human(hg18) POU2F1 (uc009wvg.1 )
Sequence Similarity
  

OMIM
IDTitleLocus
606788  ANOREXIA NERVOSA, SUSCEPTIBILITY TO, 1; ANON1
AN
1p(chr1:1-124300000)
606928  BONE MINERAL DENSITY QUANTITATIVE TRAIT LOCUS 3; BMND3
BONE MINERAL DENSITY, LOW, SUSCEPTIBILITY TO
1p36(chr1:1-27800000)
211420  BREAST CANCER, DUCTAL, 2; BRCD2
BREAST CANCER SUPPRESSOR-2; BCDS2
1p36(chr1:1-27800000)
115665  CATARACT, CONGENITAL, VOLKMANN TYPE; CCV 1pter-p36.13(chr1:1-20300000)
116600  CATARACT, POSTERIOR POLAR, 1; CTPP1
CTPP
CTPA CATARACT, CONGENITAL TOTAL, INCLUDED
1pter-p36.1(chr1:1-27800000)
121800  CORNEAL DYSTROPHY, CRYSTALLINE, OF SCHNYDER
SCCD
SCHNYDER CRYSTALLINE CORNEAL DYSTROPHY
SCHNYDER CORNEAL DYSTROPHY; SCD
1p36.3(chr1:1-7100000)
608995  DYSLEXIA, SUSCEPTIBILITY TO, 8; DYX8 1p36-p34(chr1:1-46500000)
607671  DYSTONIA 13, TORSION; DYT13 1p36.32-p36.13(chr1:2300001-20300000)
600975  GLAUCOMA 3, PRIMARY INFANTILE, B; GLC3B
GLAUCOMA, PRIMARY CONGENITAL, TYPE B
GLC3, TYPE B
1p36.2-p36.1(chr1:7100001-27800000)
605225  INFLAMMATORY BOWEL DISEASE 7; IBD7 1p36(chr1:1-27800000)
608553  LEBER CONGENITAL AMAUROSIS 9; LCA9 1p36(chr1:1-27800000)
155600  MELANOMA, CUTANEOUS MALIGNANT; CMM
MELANOMA, MALIGNANT
FAMILIAL ATYPICAL MOLE-MALIGNANT MELANOMA SYNDROME; FAMMM
MELANOMA, FAMILIAL; MLM
DYSPLASTIC NEVUS SYNDROME, HEREDITARY; DNS MELANOMA, CUTANEOUS MALIGNANT, SUSCEPTIBILITY TO, 1, INCLUDED; CMM1, INCLUDED
B-K MOLE SYNDROME, INCLUDED
1p36(chr1:1-27800000)
608446  MYOCARDIAL INFARCTION, SUSCEPTIBILITY TO, 1
MCI1
MYOCARDIAL INFARCTION, PREMATURE, SUSCEPTIBILITY TO
1p34,1q25(chr1:34400001-46500000,chr1:171200001-184000000)
606852  PARKINSON DISEASE 10; PARK10
PARKINSON DISEASE, AGE AT ONSET OF; AAOPD
1p32(chr1:51300001-60900000)
164175  POU DOMAIN, CLASS 2, TRANSCRIPTION FACTOR 1; POU2F1
OTF, LYMPHOID-SPECIFIC, 1; OTF1
OCTAMER-BINDING TRANSCRIPTION FACTOR 1; OCT1
1q22-q23(chr1:153300001-163800000)
605606  PSORIASIS SUSCEPTIBILITY 7; PSORS7 1p(chr1:1-124300000)
608543  SCHIZOPHRENIA 12
SCZD12
SCHIZOPHRENIA SUSCEPTIBILITY LOCUS, CHROMOSOME 1p-RELATED
1p36.2(chr1:7100001-16100000)
607317  SPINOCEREBELLAR ATAXIA, AUTOSOMAL RECESSIVE 4; SCAR4
SPINOCEREBELLAR ATAXIA WITH SACCADIC INTRUSIONS; SCASI
SPINOCEREBELLAR ATAXIA 24, FORMERLY; SCA24, FORMERLY
1p36(chr1:1-27800000)

Reference
The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts.
Genome Information Integration Project And H-Invitational 2 .,Yamasaki C.,Murakami K.,Fujii Y.,Sato Y.,Harada E.,Takeda J.,Taniya T.,Sakate R.,Kikugawa S.,Shimada M.,Tanino M.,Koyanagi KO.,Barrero RA.,Gough C.,Chun HW.,Habara T.,Hanaoka H.,Hayakawa Y.,Hilton PB.,Kaneko Y.,Kanno M.,Kawahara Y.,Kawamura T.,Matsuya A.,Nagata N.,Nishikata K.,Noda AO.,Nurimoto S.,Saichi N.,Sakai H.,Sanbonmatsu R.,Shiba R.,Suzuki M.,Takabayashi K.,Takahashi A.,Tamura T.,Tanaka M.,Tanaka S.,Todokoro F.,Yamaguchi K.,Yamamoto N.,Okido T.,Mashima J.,Hashizume A.,Jin L.,Lee KB.,Lin YC.,Nozaki A.,Sakai K.,Tada M.,Miyazaki S.,Makino T.,Ohyanagi H.,Osato N.,Tanaka N.,Suzuki Y.,Ikeo K.,Saitou N.,Sugawara H.,O'Donovan C.,Kulikova T.,Whitfield E.,Halligan B.,Shimoyama M.,Twigger S.,Yura K.,Kimura K.,Yasuda T.,Nishikawa T.,Akiyama Y.,Motono C.,Mukai Y.,Nagasaki H.,Suwa M.,Horton P.,Kikuno R.,Ohara O.,Lancet D.,Eveno E.,Graudens E.,Imbeaud S.,Debily MA.,Hayashizaki Y.,Amid C.,Han M.,Osanger A.,Endo T.,Thomas MA.,Hirakawa M.,Makalowski W.,Nakao M.,Kim NS.,Yoo HS.,De Souza SJ.,Bonaldo Mde F.,Niimura Y.,Kuryshev V.,Schupp I.,Wiemann S.,Bellgard M.,Shionyu M.,Jia L.,Thierry-Mieg D.,Thierry-Mieg J.,Wagner L.,Zhang Q.,Go M.,Minoshima S.,Ohtsubo M.,Hanada K.,Tonellato P.,Isogai T.,Zhang J.,Lenhard B.,Kim S.,Chen Z.,Hinz U.,Estreicher A.,Nakai K.,Makalowska I.,Hide W.,Tiffin N.,Wilming L.,Chakraborty R.,Soares MB.,Chiusano ML.,Suzuki Y.,Auffray C.,Yamaguchi-Kabata Y.,Itoh T.,Hishiki T.,Fukuchi S.,Nishikawa K.,Sugano S.,Nomura N.,Tateno Y.,Imanishi T. and Gojobori T.
Nucleic Acids Res 36 (Database issue), D793-9 (2008)
RNAdb--a comprehensive mammalian noncoding RNA database.
Pang KC.,Stephen S.,Engström PG.,Tajul-Arifin K.,Chen W.,Wahlestedt C.,Lenhard B.,Hayashizaki Y. and Mattick JS.
Nucleic Acids Res 33 (Database issue), D125-30 (2005)
Integrative annotation of 21,037 human genes validated by full-length cDNA clones.
Imanishi T.,Itoh T.,Suzuki Y.,O'Donovan C.,Fukuchi S.,Koyanagi KO.,Barrero RA.,Tamura T.,Yamaguchi-Kabata Y.,Tanino M.,Yura K.,Miyazaki S.,Ikeo K.,Homma K.,Kasprzyk A.,Nishikawa T.,Hirakawa M.,Thierry-Mieg J.,Thierry-Mieg D.,Ashurst J.,Jia L.,Nakao M.,Thomas MA.,Mulder N.,Karavidopoulou Y.,Jin L.,Kim S.,Yasuda T.,Lenhard B.,Eveno E.,Suzuki Y.,Yamasaki C.,Takeda J.,Gough C.,Hilton P.,Fujii Y.,Sakai H.,Tanaka S.,Amid C.,Bellgard M.,Bonaldo Mde F.,Bono H.,Bromberg SK.,Brookes AJ.,Bruford E.,Carninci P.,Chelala C.,Couillault C.,de Souza SJ.,Debily MA.,Devignes MD.,Dubchak I.,Endo T.,Estreicher A.,Eyras E.,Fukami-Kobayashi K.,Gopinath GR.,Graudens E.,Hahn Y.,Han M.,Han ZG.,Hanada K.,Hanaoka H.,Harada E.,Hashimoto K.,Hinz U.,Hirai M.,Hishiki T.,Hopkinson I.,Imbeaud S.,Inoko H.,Kanapin A.,Kaneko Y.,Kasukawa T.,Kelso J.,Kersey P.,Kikuno R.,Kimura K.,Korn B.,Kuryshev V.,Makalowska I.,Makino T.,Mano S.,Mariage-Samson R.,Mashima J.,Matsuda H.,Mewes HW.,Minoshima S.,Nagai K.,Nagasaki H.,Nagata N.,Nigam R.,Ogasawara O.,Ohara O.,Ohtsubo M.,Okada N.,Okido T.,Oota S.,Ota M.,Ota T.,Otsuki T.,Piatier-Tonneau D.,Poustka A.,Ren SX.,Saitou N.,Sakai K.,Sakamoto S.,Sakate R.,Schupp I.,Servant F.,Sherry S.,Shiba R.,Shimizu N.,Shimoyama M.,Simpson AJ.,Soares B.,Steward C.,Suwa M.,Suzuki M.,Takahashi A.,Tamiya G.,Tanaka H.,Taylor T.,Terwilliger JD.,Unneberg P.,Veeramachaneni V.,Watanabe S.,Wilming L.,Yasuda N.,Yoo HS.,Stodolsky M.,Makalowski W.,Go M.,Nakai K.,Takagi T.,Kanehisa M.,Sakaki Y.,Quackenbush J.,Okazaki Y.,Hayashizaki Y.,Hide W.,Chakraborty R.,Nishikawa K.,Sugawara H.,Tateno Y.,Chen Z.,Oishi M.,Tonellato P.,Apweiler R.,Okubo K.,Wagner L.,Wiemann S.,Strausberg RL.,Isogai T.,Auffray C.,Nomura N.,Gojobori T. and Sugano S.
PLoS Biol 2 (6), e162 (2004)

[Return]