fRNAdb - Detail Page [FR346925]

FR346925

Summary
Sequence
Secondary Structure

Evidence Mapping [H-invitational v6.0]

extracted from H-invitational v6.0

Summary
ID	FR346925
Description	non-protein coding (noncoding) transcript
Accession	S66902
Sequence Ontology	ncRNA
Organism
Homo sapiens	human , man
Genome Mapping
human(hg18) 1 region	chr1:165635188-165647869(+)
Cross Reference
RNAdb v2.0	HIV1154
H-invitational v5.0	HIT000216140
Gene Association / Sense Overlap / Exon
human(hg18)	POU2F1 (uc001gec.1 , uc001ged.1 , uc001gee.1 , uc001gef.1 , uc001geg.2 )
Gene Association / Sense Overlap / Intron
human(hg18)	POU2F1 (uc001gec.1 , uc001ged.1 , uc001gee.1 , uc001gef.1 , uc001geg.2 , uc009wvg.1 )
Gene Association / Sense Overlap / 3'UTR
human(hg18)	POU2F1 (uc009wvg.1 )
Sequence Similarity

OMIM
ID	Title	Locus
606788	ANOREXIA NERVOSA, SUSCEPTIBILITY TO, 1; ANON1 AN	1p(chr1:1-124300000)
606928	BONE MINERAL DENSITY QUANTITATIVE TRAIT LOCUS 3; BMND3 BONE MINERAL DENSITY, LOW, SUSCEPTIBILITY TO	1p36(chr1:1-27800000)
211420	BREAST CANCER, DUCTAL, 2; BRCD2 BREAST CANCER SUPPRESSOR-2; BCDS2	1p36(chr1:1-27800000)
115665	CATARACT, CONGENITAL, VOLKMANN TYPE; CCV	1pter-p36.13(chr1:1-20300000)
116600	CATARACT, POSTERIOR POLAR, 1; CTPP1 CTPP CTPA CATARACT, CONGENITAL TOTAL, INCLUDED	1pter-p36.1(chr1:1-27800000)
121800	CORNEAL DYSTROPHY, CRYSTALLINE, OF SCHNYDER SCCD SCHNYDER CRYSTALLINE CORNEAL DYSTROPHY SCHNYDER CORNEAL DYSTROPHY; SCD	1p36.3(chr1:1-7100000)
608995	DYSLEXIA, SUSCEPTIBILITY TO, 8; DYX8	1p36-p34(chr1:1-46500000)
607671	DYSTONIA 13, TORSION; DYT13	1p36.32-p36.13(chr1:2300001-20300000)
600975	GLAUCOMA 3, PRIMARY INFANTILE, B; GLC3B GLAUCOMA, PRIMARY CONGENITAL, TYPE B GLC3, TYPE B	1p36.2-p36.1(chr1:7100001-27800000)
605225	INFLAMMATORY BOWEL DISEASE 7; IBD7	1p36(chr1:1-27800000)
608553	LEBER CONGENITAL AMAUROSIS 9; LCA9	1p36(chr1:1-27800000)
155600	MELANOMA, CUTANEOUS MALIGNANT; CMM MELANOMA, MALIGNANT FAMILIAL ATYPICAL MOLE-MALIGNANT MELANOMA SYNDROME; FAMMM MELANOMA, FAMILIAL; MLM DYSPLASTIC NEVUS SYNDROME, HEREDITARY; DNS MELANOMA, CUTANEOUS MALIGNANT, SUSCEPTIBILITY TO, 1, INCLUDED; CMM1, INCLUDED B-K MOLE SYNDROME, INCLUDED	1p36(chr1:1-27800000)
608446	MYOCARDIAL INFARCTION, SUSCEPTIBILITY TO, 1 MCI1 MYOCARDIAL INFARCTION, PREMATURE, SUSCEPTIBILITY TO	1p34,1q25(chr1:34400001-46500000,chr1:171200001-184000000)
606852	PARKINSON DISEASE 10; PARK10 PARKINSON DISEASE, AGE AT ONSET OF; AAOPD	1p32(chr1:51300001-60900000)
164175	POU DOMAIN, CLASS 2, TRANSCRIPTION FACTOR 1; POU2F1 OTF, LYMPHOID-SPECIFIC, 1; OTF1 OCTAMER-BINDING TRANSCRIPTION FACTOR 1; OCT1	1q22-q23(chr1:153300001-163800000)
605606	PSORIASIS SUSCEPTIBILITY 7; PSORS7	1p(chr1:1-124300000)
608543	SCHIZOPHRENIA 12 SCZD12 SCHIZOPHRENIA SUSCEPTIBILITY LOCUS, CHROMOSOME 1p-RELATED	1p36.2(chr1:7100001-16100000)
607317	SPINOCEREBELLAR ATAXIA, AUTOSOMAL RECESSIVE 4; SCAR4 SPINOCEREBELLAR ATAXIA WITH SACCADIC INTRUSIONS; SCASI SPINOCEREBELLAR ATAXIA 24, FORMERLY; SCA24, FORMERLY	1p36(chr1:1-27800000)

Reference
The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. Genome Information Integration Project And H-Invitational 2 .,Yamasaki C.,Murakami K.,Fujii Y.,Sato Y.,Harada E.,Takeda J.,Taniya T.,Sakate R.,Kikugawa S.,Shimada M.,Tanino M.,Koyanagi KO.,Barrero RA.,Gough C.,Chun HW.,Habara T.,Hanaoka H.,Hayakawa Y.,Hilton PB.,Kaneko Y.,Kanno M.,Kawahara Y.,Kawamura T.,Matsuya A.,Nagata N.,Nishikata K.,Noda AO.,Nurimoto S.,Saichi N.,Sakai H.,Sanbonmatsu R.,Shiba R.,Suzuki M.,Takabayashi K.,Takahashi A.,Tamura T.,Tanaka M.,Tanaka S.,Todokoro F.,Yamaguchi K.,Yamamoto N.,Okido T.,Mashima J.,Hashizume A.,Jin L.,Lee KB.,Lin YC.,Nozaki A.,Sakai K.,Tada M.,Miyazaki S.,Makino T.,Ohyanagi H.,Osato N.,Tanaka N.,Suzuki Y.,Ikeo K.,Saitou N.,Sugawara H.,O'Donovan C.,Kulikova T.,Whitfield E.,Halligan B.,Shimoyama M.,Twigger S.,Yura K.,Kimura K.,Yasuda T.,Nishikawa T.,Akiyama Y.,Motono C.,Mukai Y.,Nagasaki H.,Suwa M.,Horton P.,Kikuno R.,Ohara O.,Lancet D.,Eveno E.,Graudens E.,Imbeaud S.,Debily MA.,Hayashizaki Y.,Amid C.,Han M.,Osanger A.,Endo T.,Thomas MA.,Hirakawa M.,Makalowski W.,Nakao M.,Kim NS.,Yoo HS.,De Souza SJ.,Bonaldo Mde F.,Niimura Y.,Kuryshev V.,Schupp I.,Wiemann S.,Bellgard M.,Shionyu M.,Jia L.,Thierry-Mieg D.,Thierry-Mieg J.,Wagner L.,Zhang Q.,Go M.,Minoshima S.,Ohtsubo M.,Hanada K.,Tonellato P.,Isogai T.,Zhang J.,Lenhard B.,Kim S.,Chen Z.,Hinz U.,Estreicher A.,Nakai K.,Makalowska I.,Hide W.,Tiffin N.,Wilming L.,Chakraborty R.,Soares MB.,Chiusano ML.,Suzuki Y.,Auffray C.,Yamaguchi-Kabata Y.,Itoh T.,Hishiki T.,Fukuchi S.,Nishikawa K.,Sugano S.,Nomura N.,Tateno Y.,Imanishi T. and Gojobori T. Nucleic Acids Res 36 (Database issue), D793-9 (2008) RNAdb--a comprehensive mammalian noncoding RNA database. Pang KC.,Stephen S.,Engström PG.,Tajul-Arifin K.,Chen W.,Wahlestedt C.,Lenhard B.,Hayashizaki Y. and Mattick JS. Nucleic Acids Res 33 (Database issue), D125-30 (2005) Integrative annotation of 21,037 human genes validated by full-length cDNA clones. Imanishi T.,Itoh T.,Suzuki Y.,O'Donovan C.,Fukuchi S.,Koyanagi KO.,Barrero RA.,Tamura T.,Yamaguchi-Kabata Y.,Tanino M.,Yura K.,Miyazaki S.,Ikeo K.,Homma K.,Kasprzyk A.,Nishikawa T.,Hirakawa M.,Thierry-Mieg J.,Thierry-Mieg D.,Ashurst J.,Jia L.,Nakao M.,Thomas MA.,Mulder N.,Karavidopoulou Y.,Jin L.,Kim S.,Yasuda T.,Lenhard B.,Eveno E.,Suzuki Y.,Yamasaki C.,Takeda J.,Gough C.,Hilton P.,Fujii Y.,Sakai H.,Tanaka S.,Amid C.,Bellgard M.,Bonaldo Mde F.,Bono H.,Bromberg SK.,Brookes AJ.,Bruford E.,Carninci P.,Chelala C.,Couillault C.,de Souza SJ.,Debily MA.,Devignes MD.,Dubchak I.,Endo T.,Estreicher A.,Eyras E.,Fukami-Kobayashi K.,Gopinath GR.,Graudens E.,Hahn Y.,Han M.,Han ZG.,Hanada K.,Hanaoka H.,Harada E.,Hashimoto K.,Hinz U.,Hirai M.,Hishiki T.,Hopkinson I.,Imbeaud S.,Inoko H.,Kanapin A.,Kaneko Y.,Kasukawa T.,Kelso J.,Kersey P.,Kikuno R.,Kimura K.,Korn B.,Kuryshev V.,Makalowska I.,Makino T.,Mano S.,Mariage-Samson R.,Mashima J.,Matsuda H.,Mewes HW.,Minoshima S.,Nagai K.,Nagasaki H.,Nagata N.,Nigam R.,Ogasawara O.,Ohara O.,Ohtsubo M.,Okada N.,Okido T.,Oota S.,Ota M.,Ota T.,Otsuki T.,Piatier-Tonneau D.,Poustka A.,Ren SX.,Saitou N.,Sakai K.,Sakamoto S.,Sakate R.,Schupp I.,Servant F.,Sherry S.,Shiba R.,Shimizu N.,Shimoyama M.,Simpson AJ.,Soares B.,Steward C.,Suwa M.,Suzuki M.,Takahashi A.,Tamiya G.,Tanaka H.,Taylor T.,Terwilliger JD.,Unneberg P.,Veeramachaneni V.,Watanabe S.,Wilming L.,Yasuda N.,Yoo HS.,Stodolsky M.,Makalowski W.,Go M.,Nakai K.,Takagi T.,Kanehisa M.,Sakaki Y.,Quackenbush J.,Okazaki Y.,Hayashizaki Y.,Hide W.,Chakraborty R.,Nishikawa K.,Sugawara H.,Tateno Y.,Chen Z.,Oishi M.,Tonellato P.,Apweiler R.,Okubo K.,Wagner L.,Wiemann S.,Strausberg RL.,Isogai T.,Auffray C.,Nomura N.,Gojobori T. and Sugano S. PLoS Biol 2 (6), e162 (2004)

Reference

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts.
Genome Information Integration Project And H-Invitational 2 .,Yamasaki C.,Murakami K.,Fujii Y.,Sato Y.,Harada E.,Takeda J.,Taniya T.,Sakate R.,Kikugawa S.,Shimada M.,Tanino M.,Koyanagi KO.,Barrero RA.,Gough C.,Chun HW.,Habara T.,Hanaoka H.,Hayakawa Y.,Hilton PB.,Kaneko Y.,Kanno M.,Kawahara Y.,Kawamura T.,Matsuya A.,Nagata N.,Nishikata K.,Noda AO.,Nurimoto S.,Saichi N.,Sakai H.,Sanbonmatsu R.,Shiba R.,Suzuki M.,Takabayashi K.,Takahashi A.,Tamura T.,Tanaka M.,Tanaka S.,Todokoro F.,Yamaguchi K.,Yamamoto N.,Okido T.,Mashima J.,Hashizume A.,Jin L.,Lee KB.,Lin YC.,Nozaki A.,Sakai K.,Tada M.,Miyazaki S.,Makino T.,Ohyanagi H.,Osato N.,Tanaka N.,Suzuki Y.,Ikeo K.,Saitou N.,Sugawara H.,O'Donovan C.,Kulikova T.,Whitfield E.,Halligan B.,Shimoyama M.,Twigger S.,Yura K.,Kimura K.,Yasuda T.,Nishikawa T.,Akiyama Y.,Motono C.,Mukai Y.,Nagasaki H.,Suwa M.,Horton P.,Kikuno R.,Ohara O.,Lancet D.,Eveno E.,Graudens E.,Imbeaud S.,Debily MA.,Hayashizaki Y.,Amid C.,Han M.,Osanger A.,Endo T.,Thomas MA.,Hirakawa M.,Makalowski W.,Nakao M.,Kim NS.,Yoo HS.,De Souza SJ.,Bonaldo Mde F.,Niimura Y.,Kuryshev V.,Schupp I.,Wiemann S.,Bellgard M.,Shionyu M.,Jia L.,Thierry-Mieg D.,Thierry-Mieg J.,Wagner L.,Zhang Q.,Go M.,Minoshima S.,Ohtsubo M.,Hanada K.,Tonellato P.,Isogai T.,Zhang J.,Lenhard B.,Kim S.,Chen Z.,Hinz U.,Estreicher A.,Nakai K.,Makalowska I.,Hide W.,Tiffin N.,Wilming L.,Chakraborty R.,Soares MB.,Chiusano ML.,Suzuki Y.,Auffray C.,Yamaguchi-Kabata Y.,Itoh T.,Hishiki T.,Fukuchi S.,Nishikawa K.,Sugano S.,Nomura N.,Tateno Y.,Imanishi T. and Gojobori T.
Nucleic Acids Res 36 (Database issue), D793-9 (2008)

RNAdb--a comprehensive mammalian noncoding RNA database.
Pang KC.,Stephen S.,Engström PG.,Tajul-Arifin K.,Chen W.,Wahlestedt C.,Lenhard B.,Hayashizaki Y. and Mattick JS.
Nucleic Acids Res 33 (Database issue), D125-30 (2005)

Integrative annotation of 21,037 human genes validated by full-length cDNA clones.
Imanishi T.,Itoh T.,Suzuki Y.,O'Donovan C.,Fukuchi S.,Koyanagi KO.,Barrero RA.,Tamura T.,Yamaguchi-Kabata Y.,Tanino M.,Yura K.,Miyazaki S.,Ikeo K.,Homma K.,Kasprzyk A.,Nishikawa T.,Hirakawa M.,Thierry-Mieg J.,Thierry-Mieg D.,Ashurst J.,Jia L.,Nakao M.,Thomas MA.,Mulder N.,Karavidopoulou Y.,Jin L.,Kim S.,Yasuda T.,Lenhard B.,Eveno E.,Suzuki Y.,Yamasaki C.,Takeda J.,Gough C.,Hilton P.,Fujii Y.,Sakai H.,Tanaka S.,Amid C.,Bellgard M.,Bonaldo Mde F.,Bono H.,Bromberg SK.,Brookes AJ.,Bruford E.,Carninci P.,Chelala C.,Couillault C.,de Souza SJ.,Debily MA.,Devignes MD.,Dubchak I.,Endo T.,Estreicher A.,Eyras E.,Fukami-Kobayashi K.,Gopinath GR.,Graudens E.,Hahn Y.,Han M.,Han ZG.,Hanada K.,Hanaoka H.,Harada E.,Hashimoto K.,Hinz U.,Hirai M.,Hishiki T.,Hopkinson I.,Imbeaud S.,Inoko H.,Kanapin A.,Kaneko Y.,Kasukawa T.,Kelso J.,Kersey P.,Kikuno R.,Kimura K.,Korn B.,Kuryshev V.,Makalowska I.,Makino T.,Mano S.,Mariage-Samson R.,Mashima J.,Matsuda H.,Mewes HW.,Minoshima S.,Nagai K.,Nagasaki H.,Nagata N.,Nigam R.,Ogasawara O.,Ohara O.,Ohtsubo M.,Okada N.,Okido T.,Oota S.,Ota M.,Ota T.,Otsuki T.,Piatier-Tonneau D.,Poustka A.,Ren SX.,Saitou N.,Sakai K.,Sakamoto S.,Sakate R.,Schupp I.,Servant F.,Sherry S.,Shiba R.,Shimizu N.,Shimoyama M.,Simpson AJ.,Soares B.,Steward C.,Suwa M.,Suzuki M.,Takahashi A.,Tamiya G.,Tanaka H.,Taylor T.,Terwilliger JD.,Unneberg P.,Veeramachaneni V.,Watanabe S.,Wilming L.,Yasuda N.,Yoo HS.,Stodolsky M.,Makalowski W.,Go M.,Nakai K.,Takagi T.,Kanehisa M.,Sakaki Y.,Quackenbush J.,Okazaki Y.,Hayashizaki Y.,Hide W.,Chakraborty R.,Nishikawa K.,Sugawara H.,Tateno Y.,Chen Z.,Oishi M.,Tonellato P.,Apweiler R.,Okubo K.,Wagner L.,Wiemann S.,Strausberg RL.,Isogai T.,Auffray C.,Nomura N.,Gojobori T. and Sugano S.
PLoS Biol 2 (6), e162 (2004)

Evidence :

Evidence Secondary Structure [putative(CentroidFold)]

Putative secondary structure predicted by CentroidFold(-g=4).

Click here to view the PDF file.

0         1         2         3         4         5         6
UCACCUAUUAAAGCAAUUUUCCCCAGCCCAACUUCACUGGCACUUCAGACACCACCUCCAACAACACAGC
......................((((..........))))..............................

7         8
AACCGUGAUUUCCACAGCG
...................

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