fRNAdb - Detail Page [FR356555]

FR356555

Summary
Sequence
Secondary Structure

Evidence Mapping [blat]

blat with identity=99, coverage=90 and no-repeat

Evidence Sequence Similarity [highly similar]

Almost same sequences with one mismatch or one gap

Summary
ID	FR356555
Description	H/ACA box guide small nucleolar RNA (snoRNA) U98
Accession	AJ609433 , AY349598
Sequence Ontology	H_ACA_box_snoRNA
Organism
Homo sapiens	human , man
Genome Mapping
human(hg18) 1 region	chr1:28780019-28780151(-)
Cross Reference
Rfam v8.1	RF00190
NONCODE v1.0	u3298
Gene Association / Sense Overlap / 5'UTR
human(hg18)	NR_003035 (uc001bqt.2 ), TRG11 (uc001bqm.2 , uc001bqo.2 )
Gene Association / Sense Overlap / Intron
human(hg18)	TRG11 (uc001bqk.2 , uc001bql.2 , uc001bqn.2 , uc001bqp.2 )
Gene Association / Transcription Neighbor / upstream
human(hg18)	NR_002987 (uc001bqr.2 ), NR_003077 (uc001bqq.1 ), NR_002976 (uc001bqs.2 )
Sequence Similarity
highly similar	FR219435 H/ACA box guide small nucleolar RNA (snoRNA) ACA16 / SNORA16A

MicroArray / Affymetrix GeneChip Exon Array / hg18
Probe	Transcript Cluster	Probe Locus
3943536	2403557	chr1:28780051-28780075(-)
2799270	2403557	chr1:28780052-28780076(-)
636140	2403557	chr1:28780054-28780078(-)
2550955	2403557	chr1:28780056-28780080(-)

Reference
NONCODE: an integrated knowledge database of non-coding RNAs. Liu C.,Bai B.,Skogerbø G.,Cai L.,Deng W.,Zhang Y.,Bu D.,Zhao Y. and Chen R. Nucleic Acids Res 33 (Database issue), D112-5 (2005) Human box H/ACA pseudouridylation guide RNA machinery. Kiss AM.,Jády BE.,Bertrand E. and Kiss T. Mol Cell Biol 24 (13), 5797-807 (2004) Identification of 13 novel human modification guide RNAs. Vitali P.,Royo H.,Seitz H.,Bachellerie JP.,Hüttenhofer A. and Cavaillé J. Nucleic Acids Res 31 (22), 6543-51 (2003) Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes. Gaspin C.,Cavaillé J.,Erauso G. and Bachellerie JP. J Mol Biol 297 (4), 895-906 (2000) The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. Balakin AG.,Smith L. and Fournier MJ. Cell 86 (5), 823-34 (1996)

Reference

NONCODE: an integrated knowledge database of non-coding RNAs.
Liu C.,Bai B.,Skogerbø G.,Cai L.,Deng W.,Zhang Y.,Bu D.,Zhao Y. and Chen R.
Nucleic Acids Res 33 (Database issue), D112-5 (2005)

Human box H/ACA pseudouridylation guide RNA machinery.
Kiss AM.,Jády BE.,Bertrand E. and Kiss T.
Mol Cell Biol 24 (13), 5797-807 (2004)

Identification of 13 novel human modification guide RNAs.
Vitali P.,Royo H.,Seitz H.,Bachellerie JP.,Hüttenhofer A. and Cavaillé J.
Nucleic Acids Res 31 (22), 6543-51 (2003)

Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes.
Gaspin C.,Cavaillé J.,Erauso G. and Bachellerie JP.
J Mol Biol 297 (4), 895-906 (2000)

The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions.
Balakin AG.,Smith L. and Fournier MJ.
Cell 86 (5), 823-34 (1996)

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