FR356555

[Return]
  • Summary
  • Sequence
  • Secondary Structure
Evidence Mapping [blat]
blat with identity=99, coverage=90 and no-repeat
Evidence Sequence Similarity [highly similar]
Almost same sequences with one mismatch or one gap
Summary
ID FR356555
Description H/ACA box guide small nucleolar RNA (snoRNA) U98
Accession AJ609433 , AY349598
Sequence Ontology H_ACA_box_snoRNA
Organism
Homo sapiens human , man
Genome Mapping
human(hg18)           1 region chr1:28780019-28780151(-) 
Cross Reference
Rfam v8.1 RF00190
NONCODE v1.0 u3298
Gene Association / Sense Overlap / 5'UTR
human(hg18) NR_003035 (uc001bqt.2 ), TRG11 (uc001bqm.2 , uc001bqo.2 )
Gene Association / Sense Overlap / Intron
human(hg18) TRG11 (uc001bqk.2 , uc001bql.2 , uc001bqn.2 , uc001bqp.2 )
Gene Association / Transcription Neighbor / upstream
human(hg18) NR_002987 (uc001bqr.2 ), NR_003077 (uc001bqq.1 ), NR_002976 (uc001bqs.2 )
Sequence Similarity
highly similar FR219435   H/ACA box guide small nucleolar RNA (snoRNA) ACA16 / SNORA16A

MicroArray / Affymetrix GeneChip Exon Array / hg18
ProbeTranscript ClusterProbe Locus
3943536 2403557  chr1:28780051-28780075(-) 
2799270 2403557  chr1:28780052-28780076(-) 
636140 2403557  chr1:28780054-28780078(-) 
2550955 2403557  chr1:28780056-28780080(-) 

Reference
NONCODE: an integrated knowledge database of non-coding RNAs.
Liu C.,Bai B.,Skogerbø G.,Cai L.,Deng W.,Zhang Y.,Bu D.,Zhao Y. and Chen R.
Nucleic Acids Res 33 (Database issue), D112-5 (2005)
Human box H/ACA pseudouridylation guide RNA machinery.
Kiss AM.,Jády BE.,Bertrand E. and Kiss T.
Mol Cell Biol 24 (13), 5797-807 (2004)
Identification of 13 novel human modification guide RNAs.
Vitali P.,Royo H.,Seitz H.,Bachellerie JP.,Hüttenhofer A. and Cavaillé J.
Nucleic Acids Res 31 (22), 6543-51 (2003)
Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes.
Gaspin C.,Cavaillé J.,Erauso G. and Bachellerie JP.
J Mol Biol 297 (4), 895-906 (2000)
The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions.
Balakin AG.,Smith L. and Fournier MJ.
Cell 86 (5), 823-34 (1996)

[Return]