FR378527

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  • Summary
  • Sequence
Evidence Mapping [blat]
blat with identity=99, coverage=90 and no-repeat
Summary
ID FR378527
Description H19 RNA
Accession AF125183
Sequence Ontology ncRNA
Organism
Homo sapiens human , man
Genome Mapping
human(hg18)           1 region chr11:1972987-1975651(-) 
Cross Reference
NONCODE v1.0 u837
RNAdb v2.0 LIT1610
Gene Association / Sense Overlap / 5'UTR
human(hg18) CR594717 (uc001lvb.1 ), CR607033 (uc001lvd.2 ), BC010054 (uc001lva.2 ), CR597604 (uc001lve.2 ), CR598390 (uc001lvc.1 ), CR596119 (uc001luz.1 )
Gene Association / Sense Overlap / Exon
human(hg18) CR598390 (uc001lvc.1 )
Gene Association / Sense Overlap / Intron
human(hg18) CR594717 (uc001lvb.1 ), CR607033 (uc001lvd.2 ), BC010054 (uc001lva.2 ), CR597604 (uc001lve.2 ), CR598390 (uc001lvc.1 ), CR596119 (uc001luz.1 )
Gene Association / Sense Overlap / 3'UTR
human(hg18) CR598390 (uc001lvc.1 )
Sequence Similarity
  

OMIM
IDTitleLocus
103280  H19 GENE; H19
ADULT SKELETAL MUSCLE GENE; ASM
ASM1
D11S813E
11p15.5(chr11:1-2800000)

MicroArray / Affymetrix GeneChip Exon Array / hg18
ProbeTranscript ClusterProbe Locus
4079563 3359076  chr11:1973062-1973086(-) 
1990750 3359076  chr11:1973063-1973087(-) 
3232340 3359076  chr11:1973091-1973115(-) 
2536492 3359076  chr11:1973110-1973134(-) 
6056213 3359076  chr11:1973197-1973221(-) 
2970960 3359076  chr11:1973222-1973246(-) 
1350791 3359076  chr11:1973263-1973287(-) 
5201624 3359076  chr11:1973313-1973337(-) 
1031509 3359076  chr11:1973513-1973537(-) 
680038 3359076  chr11:1973532-1973556(-) 
2828020 3359076  chr11:1973535-1973559(-) 
1832027 3359076  chr11:1973536-1973560(-) 
2323384 3359076  chr11:1973561-1973585(-) 
5011327 3359076  chr11:1973562-1973586(-) 
2167550 3359076  chr11:1973567-1973591(-) 
5218977 3359076  chr11:1973570-1973594(-) 
4108317 3359076  chr11:1973601-1973625(-) 
3478422 3359076  chr11:1973603-1973627(-) 
2941404 3359076  chr11:1973626-1973650(-) 
1456492 3359076  chr11:1973645-1973669(-) 
5026989 3359076  chr11:1973682-1973706(-) 
2651370 3359076  chr11:1973689-1973713(-) 
2907023 3359076  chr11:1973693-1973717(-) 
2295416 3359076  chr11:1973696-1973720(-) 
1643433 3359076  chr11:1973756-1973780(-) 
396632 3359076  chr11:1973758-1973782(-) 
1653533 3359076  chr11:1973761-1973785(-) 
5949122 3359076  chr11:1973763-1973787(-) 
1640375 3359076  chr11:1973815-1973839(-) 
4586809 3359076  chr11:1973833-1973857(-) 
348125 3359076  chr11:1973857-1973881(-) 
1981043 3359076  chr11:1973860-1973884(-) 
5976758 3359076  chr11:1973915-1973939(-) 
5913309 3359076  chr11:1973923-1973947(-) 
4935481 3359076  chr11:1973929-1973953(-) 
3214858 3359076  chr11:1973953-1973977(-) 

Reference
RNAdb--a comprehensive mammalian noncoding RNA database.
Pang KC.,Stephen S.,Engström PG.,Tajul-Arifin K.,Chen W.,Wahlestedt C.,Lenhard B.,Hayashizaki Y. and Mattick JS.
Nucleic Acids Res 33 (Database issue), D125-30 (2005)
NONCODE: an integrated knowledge database of non-coding RNAs.
Liu C.,Bai B.,Skogerbø G.,Cai L.,Deng W.,Zhang Y.,Bu D.,Zhao Y. and Chen R.
Nucleic Acids Res 33 (Database issue), D112-5 (2005)
The sheep (Ovis aries) H19 gene: genomic structure and expression patterns, from the preimplantation embryo to adulthood.
Lee RS.,Depree KM. and Davey HW.
Gene 301 (1-2), 67-77 (2002)
Overexpression of an ectopic H19 gene enhances the tumorigenic properties of breast cancer cells.
Lottin S.,Adriaenssens E.,Dupressoir T.,Berteaux N.,Montpellier C.,Coll J.,Dugimont T. and Curgy JJ.
Carcinogenesis 23 (11), 1885-95 (2002)
Comparative sequence analysis of the INS-IGF2-H19 gene cluster in pigs.
Amarger V.,Nguyen M.,Van Laere AS.,Braunschweig M.,Nezer C.,Georges M. and Andersson L.
Mamm Genome 13 (7), 388-98 (2002)
Epigenetic alterations of H19 and LIT1 distinguish patients with Beckwith-Wiedemann syndrome with cancer and birth defects.
DeBaun MR.,Niemitz EL.,McNeil DE.,Brandenburg SA.,Lee MP. and Feinberg AP.
Am J Hum Genet 70 (3), 604-11 (2002)
Large scale mapping of methylcytosines in CTCF-binding sites in the human H19 promoter and aberrant hypomethylation in human bladder cancer.
Takai D.,Gonzales FA.,Tsai YC.,Thayer MJ. and Jones PA.
Hum Mol Genet 10 (23), 2619-26 (2001)
Ontogeny of the H19 gene in sheep and effect of maternal fasting on its expression in the fetus.
Naimeh LG.,Schutte BC.,Hamilton WS. and Tsalikian E.
Endocr Res 27 (4), 417-31 (2001)
Evidence for evolutionarily conserved secondary structure in the H19 tumor suppressor RNA.
Juan V.,Crain C. and Wilson C.
Nucleic Acids Res 28 (5), 1221-7 (2000)
Collection of mRNA-like non-coding RNAs.
Erdmann VA.,Szymanski M.,Hochberg A.,de Groot N. and Barciszewski J.
Nucleic Acids Res 27 (1), 192-5 (1999)
The murine H19 gene is activated during embryonic stem cell differentiation in vitro and at the time of implantation in the developing embryo.
Poirier F.,Chan CT.,Timmons PM.,Robertson EJ.,Evans MJ. and Rigby PW.
Development 113 (4), 1105-14 (1991)
The product of the H19 gene may function as an RNA.
Brannan CI.,Dees EC.,Ingram RS. and Tilghman SM.
Mol Cell Biol 10 (1), 28-36 (1990)

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