FR391398

[Return]
  • Summary
  • Sequence
  • Secondary Structure
Evidence Mapping [H-invitational v6.0]
extracted from H-invitational v6.0
Summary
ID FR391398
Description non-protein coding (noncoding) transcript
Accession X56198
Sequence Ontology ncRNA
Organism
Homo sapiens human , man
Genome Mapping
human(hg18)           1 region chrX:72961183-72961351(-) 
Cross Reference
RNAdb v2.0 HIV1231
H-invitational v5.0 HIT000322014
Gene Association / Sense Overlap / 5'UTR
human(hg18) NR_001564 (uc004ebm.1 )
Gene Association / AntiSense Overlap / 3'UTR
human(hg18) NR_003255 (uc004ebn.2 )
Sequence Similarity
  

OMIM
IDTitleLocus
300310  AGAMMAGLOBULINEMIA, X-LINKED, TYPE 2; AGMX2
XLA2
Xp22(chrX:1-24900000)
304050  AICARDI SYNDROME; AIC
CORPUS CALLOSUM, AGENESIS OF, WITH CHORIORETINAL ABNORMALITY
Xp22(chrX:1-24900000)
302801  CHARCOT-MARIE-TOOTH DISEASE, X-LINKED RECESSIVE, 2; CMTX2
CHARCOT-MARIE-TOOTH NEUROPATHY, X-LINKED RECESSIVE, 2
Xp22.2(chrX:9500001-17100000)
300066  DEAFNESS, X-LINKED 4; DFNX4
DEAFNESS, X-LINKED 6, PROGRESSIVE; DFN6
DEAFNESS, NONSYNDROMIC SENSORINEURAL PROGRESSIVE 6
Xp22(chrX:1-24900000)
300211  EPISODIC MUSCLE WEAKNESS, X-LINKED; EMWX Xp22.3(chrX:1-9500000)
305435  FETAL HEMOGLOBIN QUANTITATIVE TRAIT LOCUS 3; HBFQTL3
F-CELL PRODUCTION, X-LINKED; FCPX HETEROCELLULAR HEREDITARY PERSISTENCE OF FETAL HEMOGLOBIN, SWISS TYPE, INCLUDED
HPFH, SWISS TYPE, INCLUDED
Xp22.2(chrX:9500001-17100000)
300406  FG SYNDROME 3; FGS3 Xp22.3(chrX:1-9500000)
300273  GOITER, MULTINODULAR 2; MNG2 Xp22(chrX:1-24900000)
300221  HODGKIN DISEASE, X-LINKED PSEUDOAUTOSOMAL Xpter-p22.32(chrX:1-6000000)
426000  LYSINE-SPECIFIC DEMETHYLASE 5D; KDM5D
JUMONJI, AT-RICH INTERACTIVE DOMAIN 1D; JARID1D
SELECTED cDNA ON Y, MOUSE, HOMOLOG OF; SMCY
HISTOCOMPATIBILITY Y ANTIGEN; HY; HYA
H-Y ANTIGEN
Yq11(chrY:11300001-27200000)
300428  MENTAL RETARDATION, X-LINKED 2; MRX2 Xp22.3(chrX:1-9500000)
310465  N SYNDROME; NSX Xp22.3-p21.1(chrX:1-37500000)
301220  PIGMENTARY DISORDER, RETICULATE, WITH SYSTEMIC MANIFESTATIONS; PDR
AMYLOIDOSIS, FAMILIAL CUTANEOUS
Xp22-p21(chrX:1-37500000)
300424  RETINITIS PIGMENTOSA 23; RP23 Xp22(chrX:1-24900000)
300209  SIMPSON-GOLABI-BEHMEL SYNDROME, TYPE 2
SGBS2
Xp22(chrX:1-24900000)
313000  SPATIAL VISUALIZATION, APTITUDE FOR
VISUOSPATIAL/PERCEPTUAL ABILITIES; VSPA TURNER SYNDROME-ASSOCIATED NEUROCOGNITIVE PHENOTYPE, INCLUDED
Xp22.33(chrX:1-4300000)
300421  WITTWER SYNDROME
WTRS
300181  X INACTIVATION-SPECIFIC TRANSCRIPT-ANTISENSE; TSIX
XIST-ANTISENSE
Xq13.2(chrX:72200001-73800000)
314670  X INACTIVATION-SPECIFIC TRANSCRIPT; XIST X INACTIVATION CENTER, INCLUDED; XIC, INCLUDED Xq13.2(chrX:72200001-73800000)

MicroArray / Affymetrix GeneChip Exon Array / hg18
ProbeTranscript ClusterProbe Locus
5643624 4012572  chrX:72961250-72961274(-) 
1241470 4012572  chrX:72961272-72961296(-) 

Reference
The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts.
Genome Information Integration Project And H-Invitational 2 .,Yamasaki C.,Murakami K.,Fujii Y.,Sato Y.,Harada E.,Takeda J.,Taniya T.,Sakate R.,Kikugawa S.,Shimada M.,Tanino M.,Koyanagi KO.,Barrero RA.,Gough C.,Chun HW.,Habara T.,Hanaoka H.,Hayakawa Y.,Hilton PB.,Kaneko Y.,Kanno M.,Kawahara Y.,Kawamura T.,Matsuya A.,Nagata N.,Nishikata K.,Noda AO.,Nurimoto S.,Saichi N.,Sakai H.,Sanbonmatsu R.,Shiba R.,Suzuki M.,Takabayashi K.,Takahashi A.,Tamura T.,Tanaka M.,Tanaka S.,Todokoro F.,Yamaguchi K.,Yamamoto N.,Okido T.,Mashima J.,Hashizume A.,Jin L.,Lee KB.,Lin YC.,Nozaki A.,Sakai K.,Tada M.,Miyazaki S.,Makino T.,Ohyanagi H.,Osato N.,Tanaka N.,Suzuki Y.,Ikeo K.,Saitou N.,Sugawara H.,O'Donovan C.,Kulikova T.,Whitfield E.,Halligan B.,Shimoyama M.,Twigger S.,Yura K.,Kimura K.,Yasuda T.,Nishikawa T.,Akiyama Y.,Motono C.,Mukai Y.,Nagasaki H.,Suwa M.,Horton P.,Kikuno R.,Ohara O.,Lancet D.,Eveno E.,Graudens E.,Imbeaud S.,Debily MA.,Hayashizaki Y.,Amid C.,Han M.,Osanger A.,Endo T.,Thomas MA.,Hirakawa M.,Makalowski W.,Nakao M.,Kim NS.,Yoo HS.,De Souza SJ.,Bonaldo Mde F.,Niimura Y.,Kuryshev V.,Schupp I.,Wiemann S.,Bellgard M.,Shionyu M.,Jia L.,Thierry-Mieg D.,Thierry-Mieg J.,Wagner L.,Zhang Q.,Go M.,Minoshima S.,Ohtsubo M.,Hanada K.,Tonellato P.,Isogai T.,Zhang J.,Lenhard B.,Kim S.,Chen Z.,Hinz U.,Estreicher A.,Nakai K.,Makalowska I.,Hide W.,Tiffin N.,Wilming L.,Chakraborty R.,Soares MB.,Chiusano ML.,Suzuki Y.,Auffray C.,Yamaguchi-Kabata Y.,Itoh T.,Hishiki T.,Fukuchi S.,Nishikawa K.,Sugano S.,Nomura N.,Tateno Y.,Imanishi T. and Gojobori T.
Nucleic Acids Res 36 (Database issue), D793-9 (2008)
RNAdb--a comprehensive mammalian noncoding RNA database.
Pang KC.,Stephen S.,Engström PG.,Tajul-Arifin K.,Chen W.,Wahlestedt C.,Lenhard B.,Hayashizaki Y. and Mattick JS.
Nucleic Acids Res 33 (Database issue), D125-30 (2005)
Integrative annotation of 21,037 human genes validated by full-length cDNA clones.
Imanishi T.,Itoh T.,Suzuki Y.,O'Donovan C.,Fukuchi S.,Koyanagi KO.,Barrero RA.,Tamura T.,Yamaguchi-Kabata Y.,Tanino M.,Yura K.,Miyazaki S.,Ikeo K.,Homma K.,Kasprzyk A.,Nishikawa T.,Hirakawa M.,Thierry-Mieg J.,Thierry-Mieg D.,Ashurst J.,Jia L.,Nakao M.,Thomas MA.,Mulder N.,Karavidopoulou Y.,Jin L.,Kim S.,Yasuda T.,Lenhard B.,Eveno E.,Suzuki Y.,Yamasaki C.,Takeda J.,Gough C.,Hilton P.,Fujii Y.,Sakai H.,Tanaka S.,Amid C.,Bellgard M.,Bonaldo Mde F.,Bono H.,Bromberg SK.,Brookes AJ.,Bruford E.,Carninci P.,Chelala C.,Couillault C.,de Souza SJ.,Debily MA.,Devignes MD.,Dubchak I.,Endo T.,Estreicher A.,Eyras E.,Fukami-Kobayashi K.,Gopinath GR.,Graudens E.,Hahn Y.,Han M.,Han ZG.,Hanada K.,Hanaoka H.,Harada E.,Hashimoto K.,Hinz U.,Hirai M.,Hishiki T.,Hopkinson I.,Imbeaud S.,Inoko H.,Kanapin A.,Kaneko Y.,Kasukawa T.,Kelso J.,Kersey P.,Kikuno R.,Kimura K.,Korn B.,Kuryshev V.,Makalowska I.,Makino T.,Mano S.,Mariage-Samson R.,Mashima J.,Matsuda H.,Mewes HW.,Minoshima S.,Nagai K.,Nagasaki H.,Nagata N.,Nigam R.,Ogasawara O.,Ohara O.,Ohtsubo M.,Okada N.,Okido T.,Oota S.,Ota M.,Ota T.,Otsuki T.,Piatier-Tonneau D.,Poustka A.,Ren SX.,Saitou N.,Sakai K.,Sakamoto S.,Sakate R.,Schupp I.,Servant F.,Sherry S.,Shiba R.,Shimizu N.,Shimoyama M.,Simpson AJ.,Soares B.,Steward C.,Suwa M.,Suzuki M.,Takahashi A.,Tamiya G.,Tanaka H.,Taylor T.,Terwilliger JD.,Unneberg P.,Veeramachaneni V.,Watanabe S.,Wilming L.,Yasuda N.,Yoo HS.,Stodolsky M.,Makalowski W.,Go M.,Nakai K.,Takagi T.,Kanehisa M.,Sakaki Y.,Quackenbush J.,Okazaki Y.,Hayashizaki Y.,Hide W.,Chakraborty R.,Nishikawa K.,Sugawara H.,Tateno Y.,Chen Z.,Oishi M.,Tonellato P.,Apweiler R.,Okubo K.,Wagner L.,Wiemann S.,Strausberg RL.,Isogai T.,Auffray C.,Nomura N.,Gojobori T. and Sugano S.
PLoS Biol 2 (6), e162 (2004)

[Return]