fRNAdb - Detail Page [FR391625]

FR391625

Summary
Sequence

Evidence Mapping [RNAz]

extracted from RNAz track on Genome Browser@hg18

Summary
ID	FR391625
Description	Putative conserved noncoding region (RNAz)
Accession
Sequence Ontology	nc_conserved_region
Organism
Homo sapiens	human , man
Genome Mapping
human(hg18) 1 region	chr7:5501909-5502075(+)
Cross Reference
RNAdb v2.0	RNZ30458
Gene Association / AntiSense Overlap / Intron
human(hg18)	FBXL18 (uc003son.2 , uc003soo.1 )
Sequence Similarity

OMIM
ID	Title	Locus
609084	F-BOX AND LEUCINE-RICH REPEAT PROTEIN 18; FBXL18 FBL18

Reference
Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome. Washietl S.,Hofacker IL.,Lukasser M.,Hüttenhofer A. and Stadler PF. Nat Biotechnol 23 (11), 1383-90 (2005) RNAdb--a comprehensive mammalian noncoding RNA database. Pang KC.,Stephen S.,Engström PG.,Tajul-Arifin K.,Chen W.,Wahlestedt C.,Lenhard B.,Hayashizaki Y. and Mattick JS. Nucleic Acids Res 33 (Database issue), D125-30 (2005)

Reference

Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome.
Washietl S.,Hofacker IL.,Lukasser M.,Hüttenhofer A. and Stadler PF.
Nat Biotechnol 23 (11), 1383-90 (2005)

RNAdb--a comprehensive mammalian noncoding RNA database.
Pang KC.,Stephen S.,Engström PG.,Tajul-Arifin K.,Chen W.,Wahlestedt C.,Lenhard B.,Hayashizaki Y. and Mattick JS.
Nucleic Acids Res 33 (Database issue), D125-30 (2005)

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offset      0         1         2         3         4         5         6
FR391625    CCACCUGCUCCUU------------------CCAC----UGCAGCGUC--CGGGCUC-CC----------
rn4         CCACCUGCUG-------------------------------CAGCAUCUCUGGGCUC-GC----------
cavPor3     --------CCCUCGGA--GA---GC------AGAC----AC------------------A----------
mm9         CCACCUAC-------------------------------UGCAGCAUCUCUGGGCAC-GC----------
speTri1     CCACCUGCUCCAC------------------CCCC----UGCAGCUUCCCUGGGCUU-GC----------
tupBel1     CCACCUGCCCCUU------------------UCAC----UCUGGCUUCCCUGGGCUC-GC----------
oryCun1     ---------------------------------GC----UGCAGCCUCCCUGGGCAC-AC----------
otoGar1     CCACCUGUUCCUU------------------UCAC----ACCAGCUUCCCUGGGCAC-CC----------
ochPri2     CGAUGGGCACAGCA-GCCCUGGGGCAGGGGGCCAC-CUCUCCUGCUCC-CC-UCAUG-A-----------
calJac1     CCACCUGCUCCUU------------------UCAC----UGCAGCGUCCCUGGGCUC-CC----------
equCab2     CCACCUGCUCCUU------------------UCAC----UCCGGCCUCCCUAGGCGU-GG----------
rheMac2     CCACCUGCUCCUU------------------UCAC----UGCAGCAUCCCUGGGCUC-CC----------
canFam2     CCACCUGCUCCUU------------------UCAC----UCCAGCCUUCCCAGGCUCAGC----------
ponAbe2     CCACCUGCUCCUU------------------CCAC----UGCAGCGUCCCUGGGCUC-CC----------
myoLuc1     CCACCUGCUCCUC------------------UCAC----UC------------------A----------
gorGor1     CCACCUGCUCCUU------------------CCAC----UGCAGCGUC-CCGGGCUC-CC----------
pteVam1     CCCCCUGCUCCUC------------------GCAC----UCCAGCCU-----------------------
panTro2     CCACCUGCUCCUU------------------CCAC----UGCAGCGUC-CCAGGCUC-CC----------
loxAfr2     CCACCUGCUUCUU------------------UCAC----UCCCGGCCC-CAGGUUUC-AC----------
monDom4     CCACCUGCUCCUU------------------UCAU----CCCAAUCUGCCUUGGCUU-CUCUUAAAACUG
ornAna1     GCGCCUGCUCCUU------------------UAUUCCCCCCCAGCCAGUCUUGGCUC-CUCUUACACCCA
SS anno     .................................................((((.................
pair symbol                                                  abcd                 

offset      7         8         9         0         1         2         3
FR391625    UUGCCGCAGAAGGCAGGAAUCCAGAGGAACGGGGCCAGCUGGCAGCGUCUGG--GA-AC-CGG-CAUUUG
rn4         CUGCCUCAGAAGGCAGCAAUCCAAAGGAAUGGGGCCAUUUGGCUGUGUUCUG-GAA-GC-CUG-UGUCUG
cavPor3     UUGCUGCAGGACACAGGGACCCAGAGGGAAGGGGCCACACAU-----------AG--G--CAGGGCCCAG
mm9         CUGCCUCAGAAGGCAGCAAUCCAGAGGAACGGGGCCAUUUGGCUGUGUUCUG--GCAGC-CU---GUGUG
speTri1     CUGUCACAGAAGGCAGGAAUCCAGAGGAACGGGGCCACUUGGCUGCAUGCCG-GAA-AC-CGG-UGUUUG
tupBel1     UCGCUGCAGAAGGCAGAAAGCCAGGGGAACAGGGCCAUUUGGCUGCAUUCUA-GAA-AC-CGG-UGUUUG
oryCun1     UCGCCCCAGAAGGCAGGGAUCCAGAGGAACCGGGCCAGCUGGCCACGUCCUA--GA-GC-CGG-CG-GUG
otoGar1     UUGCCAUGGAAGGCAGGAAUCCAGAGGAAUGGGGCCAUUUGGCCACAUUCUA-GAA-AC-UGG-UGUUUG
ochPri2     CUU-GCCAGACGGAAGAUGCCCAGGGGAACACAGCCAGCAGGCUGCGUCUGG--AA-GC-UGG-CAUGUG
calJac1     UUGCUGCAGAAGGCCAGAAUCCAGAGGAACGGGGCCAGCUGGCAGCGUCUGG--GA-AG-CGG-UGUUUG
equCab2     CUGCUGCAGAGGGCAGGAAUCCAGGGGAACGGGGCCAUCUGGCCGUGACUUA--GA-GCCUGG-UGUUUG
rheMac2     UUGCCGCAGAAGGCAGGAAUCCAGAGGAACGGGGCCAGCUGGCAGCGUCUGG--GA-AG-CAG-CGUCUG
canFam2     UUGCCGCAGAAGGCAGGACUCCAGAGGAAUGGGGCCAUUUGGCUGCGUCUUA--GAGAC-CGG-UGUCUG
ponAbe2     UUGCCGCAGAAGGCAGGAAUCCAGAGGAACGGGGCCAGCUGGCAGCGUCUGG--GA-AC-CAG-CGUUUG
myoLuc1     -GCCUCCCACAGGCAGAGAGCCAGGGGAACAGGGCCACUUGGCGCGGUUAGGAAGA-AC-CAG-GGUUUG
gorGor1     UUGCCGCAGAAGGCAGGAAUCCAGAGGAACGGGGCCAGCUGGCAGCGUCUGG--GA-AC-CGG-CGUUUG
pteVam1     -CCCCACAGAAGGCAGCAACCCAGAGAA---GAGUCACCUGGCCGCGUUUUA--GA-AA-CUG--GUUUA
panTro2     UUGCCGCAGAAGGCAGGAAUCCAGAGGAACGGGGCCAGCUGGCAGCGUCUGG--GA-AC-CGG-CGUUUG
loxAfr2     UGGCAGCAGAU-GUGGGAACCCAGAGGAACGGGACCAUCUGGCCGCGUCUCA--G-----UCG-UGUUUG
monDom4     UCAUAGCAGAAGGCAGAAAUUCAGGAGCCGGUUCUAAAUUGGCUACAUUUUA-GGA-GC-UGG-CAUUUA
ornAna1     AUGCGGCAGAAGGCAAGAAUGAAGAAGC--------AGCUGGCGG-------------------------
SS anno     (((((......)))))....)))).................(((((..((((..((.((.(.(.((((((
pair symbol efghi      ihgfe    dcba                 abcde  fghi  jk lm n o pqrstu

offset      4         5         6         7         8         9         0
FR391625    UUCUGAACAGGCAGUACCCAGCUCAGAGCAGACGUGGU--UCUCAGG-GGCUGCUGGGCACAGGCUGGAG
rn4         UUCAGAACAGGCAGUACCUUACAC--AGCAGACUG-----------U-GGCUG-UGGGCACAGGCUGGAG
cavPor3     CUCAGAGCACACACUGUGGCUC----------UGUGGCUCUAGGAG---------------AGGCCGGCG
mm9         UUCAGAACAGGCAGUACCUUACAC--AGCAGACA-G---------------------GCGCAGGCUGGAG
speTri1     UUCUGAACAGACAGUACCCAGCUCAGAGCAGACAUGGU--UCU--GC-GGCUGCUGGGCAAUGGCUAGAG
tupBel1     UUCUGAACAGGCAGUACCCAGCUCAGAGCAGACGUGGU--UCUCAGU-GGCUGCUGGGCACAGGCUCGAA
oryCun1     UACUGAACAGGCAGUACCCGGCGCACAGCAGACGGGGC--UU-CCGU-GG-----------CUGCGGGGC
otoGar1     UUCUGAACAGGCAGUACCCAGCUCAGAGCAGACGUAGU--UCUCAGU-GGCUGCCGGGCACAGGCUUGAG
ochPri2     UUCUGAAGGGGCAGUCCCCAACACUGGGCAGAC-------------------------------------
calJac1     UUCUGAACAGGCAGUACCCGGCUCAGAGCAGACGUGGU--UCUCAGC-GGCUGCUGGGCACAGGCUUGAG
equCab2     UUCUGAACAGGCAGUCCCC-GCUCCGAUCAGAG-CGGU--UCUCAGC---------------GGCUGG--
rheMac2     UUCUGAACAGGCAGUACCCAGCUCAGAGCAGACGUGGU--UCUCAGG-GGCUGCUGGGCACAGGCUGGAG
canFam2     UUCUGAACAGGCAGUACCCAGCUCUGAUCAGACAUGGU--UCUCAGA-GC--------------C-GG--
ponAbe2     UUCUGAACAGGCAGUACCCAGCUCAGAGCAGACGUGGU--UCUCAGG-GGCCGAUGAGCACAGGCUGGAG
myoLuc1     UUCUGAACAGGCAGUACCGCGA-----UCGGACGUGGC--UCUCAG---------------CGGCCA--G
gorGor1     UUCUGAACAGGCAGUACCCAGCUCAGAGCAGACGUGGU--UCUCAGG-GGCUGCUGGGCACAGGCUGGAG
pteVam1     CCCCAAACGAGCAGUACCA-GCCCCAACCACAAGGGGC--UUGCAG---------------CAGCCGG--
panTro2     UUCUGAACAGGCAGUACCCAGCUCAGAGCAGACAUGGU--UCUCAGG-GGCUGCUGGGCACAGGCUGGAG
loxAfr2     CUCUGUAGUC---G-UCCUGGCUCGGAGUAGGCGUGGU--GCACAGCCAG-----------CCACUGGGC
monDom4     UUCUCUGCAGGC----------------------------------------------------------
ornAna1     ---ACGAGAGGGAGAACCGGGA-CGAGUUGGAGGUGG--------------AGCUGGUCGAAAACCGCAA
SS anno     ((((((.(.((......)).).))))))))))))))))..))))))...)))))................
pair symbol vwxyzA B CD      DC B Azyxwvutsrqponml  kjihgf   edcba

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