fRNAdb::Statistics
Length of Sequence
This chart is made with Google Chart API. Figure in parenthesis is the number of fRNAdb Ids.
| Database | fRNAdb Ids |
|---|---|
| RNAdb | 289,336 |
| Rfam | 108,107 |
| Gene Expression Omnibus | 102,130 |
| miRBase | 5,912 |
| NONCODE | 5,516 |
| H-invitational | 2,150 |
| snoRNA-LBME-db | 359 |
| European ribosomal RNA | 44 |
These wonderful taxonomy icons are from Life Science Databases.
| Word | fRNAdb Ids |
|---|---|
| Viral Infection | 25,321 |
| Hepatitis | 7,345 |
| Immunodeficiency | 7,157 |
| hepatitis C | 6,747 |
| Foot-and-Mouth Disease | 2,167 |
| Sarcoma | 1,496 |
| Viremia | 1,099 |
| Classical Swine Fever | 1,057 |
| dengue | 325 |
| Encephalitis | 258 |
| Leukemia | 234 |
| Angelman Syndrome | 206 |
| hepatitis E | 186 |
| Lymphoma | 185 |
| Prion Diseases | 174 |
| Creutzfeldt-Jakob disease | 174 |
| Spinal Muscular Atrophy | 145 |
| Muscular Atrophy | 145 |
| Adenovirus | 138 |
| Colorectal Cancer | 131 |
Using Human disease ontology. Generic words are removed.
Words of Anatomy
Classification by anatomical terms in reference (titles & abstracts).
Top 20 are shown.
Used terms are of Foundational Model of Anatomy (subset) Ontology.
The word counting is done as follows:
Top 20 are shown.
Used terms are of Foundational Model of Anatomy (subset) Ontology.
The word counting is done as follows:
- Words are extracted by splitting texts with blank spaces. The reference articles (titles & abstracts) associated to each sequence in fRNAdb are used for the source text.
- Find and count terms (case-insensitive) registered in the ontology in the text. Synonymous terms are are grouped in a same category but counted independently.
| Word | fRNAdb Ids |
|---|---|
| Messenger RNA | 123,016 |
| Stem cell | 88,699 |
| Gonad | 84,211 |
| Intron | 62,800 |
| tRNA Transfer RNA |
62,264 34,477 |
| Ribosome | 51,339 |
| rRNA Ribosomal RNA Ribosomal ribonucleic acid |
37,006 28,338 3 |
| Somatic cell | 25,751 |
| Helix | 25,559 |
| Cytoplasm | 21,485 |
| Fibroblast | 20,460 |
| Polyribosomes Polysomes |
20,218 112 |
| RNA molecule | 13,026 |
| Large ribosomal subunit | 6,302 |
| Mitochondrial ribosome | 6,066 |
| Exon | 5,629 |
| Pyrimidine | 4,276 |
| Chromosomal region Region of chromosome |
3,641 8 |
| Nucleolus | 3,266 |
| Guanine | 2,452 |
Using Foundational Model of Anatomy (subset) ontology. Generic words are removed.
Words of Biological Process
Classification by Gene Ontology (Biological Process) terms in reference (titles & abstracts). Top 20 are shown.
The word counting is done as follows:
The word counting is done as follows:
- Words are extracted by splitting texts with blank spaces. The reference articles (titles & abstracts) associated to each sequence in fRNAdb are used for the source text.
- Find and count terms (case-insensitive) registered in the ontology in the text. Synonymous terms are are grouped in a same category but counted independently.
Using Biological Process(GO) ontology. Generic words are removed.
Words of Molecular Function
Classification by Gene Ontology (Molecular Function) terms in reference (titles & abstracts). Top 20 are shown.
The word counting is done as follows:
The word counting is done as follows:
- Words are extracted by splitting texts with blank spaces. The reference articles (titles & abstracts) associated to each sequence in fRNAdb are used for the source text.
- Find and count terms (case-insensitive) registered in the ontology in the text. Synonymous terms are are grouped in a same category but counted independently.
| Word | fRNAdb Ids |
|---|---|
| tRNA transfer RNA |
62,264 34,477 |
| ribosomal protein | 27,482 |
| proteinase | 20,071 |
| tRNA binding | 6,409 |
| base pairing | 6,346 |
| transcriptase RNA polymerase activity |
5,485 127 |
| small nucleolar RNA | 5,182 |
| RNase P | 3,867 |
| ligand | 1,198 |
| ribosome binding | 1,013 |
| RNA chaperone | 455 |
| catalytic activity enzyme activity |
370 24 |
| methyltransferase activity methylase |
367 1 |
| ABC transporter | 358 |
| TPP | 355 |
| RNA binding | 286 |
| protein binding | 276 |
| telomerase RNA | 233 |
| globin | 187 |
| MetF | 177 |
| MetH | 177 |
Using Molecular Function(GO) ontology. Generic words are removed.
Words of Cellular Component
Classification by Gene Ontology (Cellular Component) terms in reference (titles & abstracts). Top 20 are shown.
The word counting is done as follows:
The word counting is done as follows:
- Words are extracted by splitting texts with blank spaces. The reference articles (titles & abstracts) associated to each sequence in fRNAdb are used for the source text.
- Find and count terms (case-insensitive) registered in the ontology in the text. Synonymous terms are are grouped in a same category but counted independently.
| Word | fRNAdb Ids |
|---|---|
| mir-iab-4 | 16,203 |
| mir-10 | 16,203 |
| U55 | 6,066 |
| U14 | 5,024 |
| U18 | 3,799 |
| U49 | 3,713 |
| U48 | 3,713 |
| snmRNA | 734 |
| lin-4 | 594 |
| let-7 | 397 |
| U24 | 275 |
| U36 | 155 |
| U37 | 153 |
| U35 | 153 |
| U32 | 153 |
| U38 | 153 |
| HBII-52 | 147 |
| HBII-13 | 147 |
| U22 | 124 |
| HBI-36 | 121 |
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