fRNAdb::Statistics
Length of Sequence
Length of Sequence
Classification by sequence length.
This chart is made with Google Chart API. Figure in parenthesis is the number of fRNAdb Ids.
Datasource
Classification by data source.
Database name are linked to each Web site.
Database name are linked to each Web site.
| Database | fRNAdb Ids |
|---|---|
| RNAdb | 289,336 |
| Rfam | 108,107 |
| Gene Expression Omnibus | 102,130 |
| miRBase | 5,912 |
| NONCODE | 5,516 |
| H-invitational | 2,169 |
| snoRNA-LBME-db | 359 |
| European ribosomal RNA database | 44 |
Sequence Ontology
Classification by Sequence Ontology. Top 20 are shown.
Each term is linked to Sequence Ontology term browser, miSO.
Each term is linked to Sequence Ontology term browser, miSO.
Taxonomy of sequence
Classification by taxonomy. Top 20 are shown.
Taxonomy name are linked to NCBI Taxonomy.
Taxonomy name are linked to NCBI Taxonomy.
These wonderful taxonomy icons are from Life Science Databases.
Words of Disease
Classification by terms about diseases in reference (titles & abstracts).
Top 20 are shown.
Used terms are of Human Disease Ontology.
The word counting is done as follows:
Top 20 are shown.
Used terms are of Human Disease Ontology.
The word counting is done as follows:
- Words are extracted by splitting texts with blank spaces. The reference articles (titles & abstracts) associated to each sequence in fRNAdb are used for the source text.
- Find and count terms (case-insensitive) registered in the ontology in the text. Synonymous terms are are grouped in a same category but counted independently.
| Word | fRNAdb Ids |
|---|---|
| Viral Infection | 24,946 |
| Hepatitis | 7,345 |
| Immunodeficiency | 7,157 |
| Foot-and-Mouth Disease | 2,167 |
| Sarcoma | 1,496 |
| Viremia | 1,099 |
| Classical Swine Fever | 1,057 |
| dengue | 325 |
| Encephalitis | 258 |
| Prion Diseases | 174 |
| Creutzfeldt-Jakob disease | 174 |
| Muscular Atrophy | 145 |
| Spinal Muscular Atrophy | 145 |
| Leukemia | 143 |
| Adenovirus | 138 |
| Colorectal Cancer | 131 |
| Lymphoma | 129 |
| Mental Retardation | 96 |
| Angelman Syndrome | 82 |
| Japanese encephalitis | 63 |
| Yellow Fever | 63 |
Using Human disease ontology. Generic words are removed.
Words of Anatomy
Classification by anatomical terms in reference (titles & abstracts).
Top 20 are shown.
Used terms are of Foundational Model of Anatomy (subset) Ontology.
The word counting is done as follows:
Top 20 are shown.
Used terms are of Foundational Model of Anatomy (subset) Ontology.
The word counting is done as follows:
- Words are extracted by splitting texts with blank spaces. The reference articles (titles & abstracts) associated to each sequence in fRNAdb are used for the source text.
- Find and count terms (case-insensitive) registered in the ontology in the text. Synonymous terms are are grouped in a same category but counted independently.
| Word | fRNAdb Ids |
|---|---|
| Messenger RNA | 121,332 |
| Stem cell | 88,586 |
| tRNA Transfer RNA |
57,766 34,483 |
| Ribosome | 51,124 |
| rRNA Ribosomal RNA Ribosomal ribonucleic acid |
36,331 28,338 3 |
| Helix | 25,559 |
| Somatic cell | 25,380 |
| Intron | 25,207 |
| Cytoplasm | 21,483 |
| Polyribosomes Polysomes |
20,218 112 |
| RNA molecule | 12,558 |
| Large ribosomal subunit | 6,302 |
| Mitochondrial ribosome | 6,066 |
| Pyrimidine | 4,276 |
| Chromosomal region Region of chromosome |
3,641 8 |
| Fibre Fiber |
3,394 2 |
| Guanine | 2,452 |
| Small ribosomal subunit | 2,027 |
| Adenine | 1,750 |
| Ciliated | 1,679 |
Using Foundational Model of Anatomy (subset) ontology. Generic words are removed.
Words of Biological Process
Classification by Gene Ontology (Biological Process) terms in reference (titles & abstracts). Top 20 are shown.
The word counting is done as follows:
The word counting is done as follows:
- Words are extracted by splitting texts with blank spaces. The reference articles (titles & abstracts) associated to each sequence in fRNAdb are used for the source text.
- Find and count terms (case-insensitive) registered in the ontology in the text. Synonymous terms are are grouped in a same category but counted independently.
Using Biological Process(GO) ontology. Generic words are removed.
Words of Molecular Function
Classification by Gene Ontology (Molecular Function) terms in reference (titles & abstracts). Top 20 are shown.
The word counting is done as follows:
The word counting is done as follows:
- Words are extracted by splitting texts with blank spaces. The reference articles (titles & abstracts) associated to each sequence in fRNAdb are used for the source text.
- Find and count terms (case-insensitive) registered in the ontology in the text. Synonymous terms are are grouped in a same category but counted independently.
| Word | fRNAdb Ids |
|---|---|
| tRNA transfer RNA |
57,766 34,483 |
| ribosomal protein | 27,482 |
| proteinase | 20,071 |
| base pairing | 6,346 |
| transcriptase RNA polymerase activity |
5,485 127 |
| small nucleolar RNA | 5,182 |
| RNase P | 3,865 |
| protein binding | 2,743 |
| ligand | 1,198 |
| ribosome binding | 1,013 |
| RNA binding | 752 |
| RNA chaperone | 455 |
| catalytic activity enzyme activity |
370 24 |
| methyltransferase activity methylase |
367 1 |
| ABC transporter | 358 |
| TPP | 355 |
| E3 E2 |
333 65 |
| telomerase RNA | 233 |
| globin | 187 |
| MetF | 177 |
| MetH | 177 |
Using Molecular Function(GO) ontology. Generic words are removed.
Words of Cellular Component
Classification by Gene Ontology (Cellular Component) terms in reference (titles & abstracts). Top 20 are shown.
The word counting is done as follows:
The word counting is done as follows:
- Words are extracted by splitting texts with blank spaces. The reference articles (titles & abstracts) associated to each sequence in fRNAdb are used for the source text.
- Find and count terms (case-insensitive) registered in the ontology in the text. Synonymous terms are are grouped in a same category but counted independently.
Using Cellular Component(GO) ontology. Generic words are removed.
Names of snoRNA and miRNA
Classification by snoRNA name and miRNA name in reference (titles & abstracts). Top 20 are shown.
The word counting is done as follows:
The word counting is done as follows:
- Words are extracted by splitting texts with blank spaces. The reference articles (titles & abstracts) associated to each sequence in fRNAdb are used for the source text.
- Find and count terms (case-sensitive) registered in the ontology in the text. Synonymous terms are are grouped in a same category but counted independently.
| Word | fRNAdb Ids |
|---|---|
| mir-10 | 16,203 |
| mir-iab-4 | 16,203 |
| U55 | 6,066 |
| U2 | 5,157 |
| U14 | 5,024 |
| U3 | 3,943 |
| U8 | 3,828 |
| U18 | 3,799 |
| U49 | 3,713 |
| U48 | 3,713 |
| C1 | 973 |
| lin-4 | 594 |
| let-7 | 397 |
| E3 | 333 |
| U24 | 275 |
| U36 | 155 |
| U32 | 153 |
| U35 | 153 |
| U37 | 153 |
| U38 | 153 |
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