Schema for Lizard Chain - Lizard (Feb. 2007 (Broad/anoCar1)) Chained Alignments
Database: hg19    Primary Table: chainAnoCar1    Row Count: 2,720,909
Format description: Summary info about a chain of alignments
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
score 80861double score of chain
tName chr1varchar(255) Target sequence name
tSize 249250621int(10) unsigned Target sequence size
tStart 12038int(10) unsigned Alignment start position in target
tEnd 25894int(10) unsigned Alignment end position in target
qName scaffold_49varchar(255) Query sequence name
qSize 4915319int(10) unsigned Query sequence size
qStrand -char(1) Query strand
qStart 3384480int(10) unsigned Alignment start position in query
qEnd 3436551int(10) unsigned Alignment end position in query
id 13484int(10) unsigned chain id
Connected Tables and Joining Fields
      hg19.chainAnoCar1Link.chainId (via chainAnoCar1.id)
      hg19.netAnoCar1.chainId (via chainAnoCar1.id)
Sample Rows
binscoretNametSizetStarttEndqNameqSizeqStrandqStartqEndid
58580861chr12492506211203825894scaffold_494915319-3384480343655113484
58537742chr12492506215229569972scaffold_4441127981-10208991076270122028
58557152chr12492506215232569993scaffold_2362196359+1614353164690632232
58512622chr12492506215234563382scaffold_2452119245+5286295385341345966
58532889chr12492506215235769982scaffold_1243252865-15611621604556193119
58529954chr12492506215238163511scaffold_2362196359+16402661646553258223
58535040chr12492506215238269966scaffold_584748168+516725565790156932
58512376chr12492506215238353327scaffold_2362196359-126892012698891376662
58510954chr12492506215242353331scaffold_4441127981-101262910135681572099
58542363chr12492506215245970239scaffold_4441127981-84519993091482714

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.