Schema for Cow Chain - Cow (Oct. 2007 (Baylor 4.0/bosTau4)) Chained Alignments
Database: hg19    Primary Table: chainBosTau4    Row Count: 11,000,530
Format description: Summary info about a chain of alignments
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
score 485752double score of chain
tName chr1varchar(255) Target sequence name
tSize 249250621int(10) unsigned Target sequence size
tStart 11396int(10) unsigned Alignment start position in target
tEnd 36667int(10) unsigned Alignment end position in target
qName chr5varchar(255) Query sequence name
qSize 125847759int(10) unsigned Query sequence size
qStrand +char(1) Query strand
qStart 113864279int(10) unsigned Alignment start position in query
qEnd 113896657int(10) unsigned Alignment end position in query
id 4005int(10) unsigned chain id
Connected Tables and Joining Fields
      hg19.chainBosTau4Link.chainId (via chainBosTau4.id)
      hg19.netBosTau4.chainId (via chainBosTau4.id)
Sample Rows
binscoretNametSizetStarttEndqNameqSizeqStrandqStartqEndid
585485752chr12492506211139636667chr5125847759+1138642791138966574005
58515319chr12492506211440315884chr8116942821+78299360782999852750869
58515330chr12492506211440315884chr8116942821+78059713780603382747299
58533819chr12492506212756728584chr1285358539-2259015422592667450563
58537808chr12492506214100741980chr11110171769-5402474654025890313484
58562324chr12492506214100743062chr10106383598+272971232730443768898
585293272chr12492506214100764083chr10106383598+27127340271634307003
5859405chr12492506214728747551chrUn.004.243419972+17467177285356721
585249716chr12492506214728764083chr10106383598+27172721271955438426
585745396chr12492506214731970563chr10106383598+27189882272177902506

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.