Schema for Orangutan Chain - Orangutan (July 2007 (WUGSC 2.0.2/ponAbe2)) Chained Alignments

Database: hg19 Primary Table: chainPonAbe2 Row Count: 1,153,110
Format description: Summary info about a chain of alignments

field	example	SQL type	description
`bin`	585	`smallint(5) unsigned`	Indexing field to speed chromosome range queries.
`score`	184432	`double`	score of chain
`tName`	chr1	`varchar(255)`	Target sequence name
`tSize`	249250621	`int(10) unsigned`	Target sequence size
`tStart`	11462	`int(10) unsigned`	Alignment start position in target
`tEnd`	14019	`int(10) unsigned`	Alignment end position in target
`qName`	chr12_random	`varchar(255)`	Query sequence name
`qSize`	11731781	`int(10) unsigned`	Query sequence size
`qStrand`	+	`char(1)`	Query strand
`qStart`	8391153	`int(10) unsigned`	Alignment start position in query
`qEnd`	8395357	`int(10) unsigned`	Alignment end position in query
`id`	71766	`int(10) unsigned`	chain id

bin	score	tName	tSize	tStart	tEnd	qName	qSize	qStrand	qStart	qEnd	id
585	184432	chr1	249250621	11462	14019	chr12_random	11731781	+	8391153	8395357	71766
585	199845	chr1	249250621	11610	30600	chr12	136387465	+	9598113	9614681	64955
585	2279211	chr1	249250621	11625	40733	chr2b	135000294	+	21132250	21169657	1668
585	115415	chr1	249250621	13918	25960	chr12	136387465	-	124384051	124389212	113108
585	290445	chr1	249250621	21286	34936	chr12	136387465	+	9486500	9500434	41660
585	9898	chr1	249250621	24402	24679	chr12	136387465	-	124390726	124391003	793678
585	39939	chr1	249250621	24679	25814	chr12	136387465	-	124391015	124392146	262702
585	26283	chr1	249250621	30236	32788	chrUn	72422247	+	6638582	6641150	378041
585	13139	chr1	249250621	30411	30616	chr2b	135000294	+	21155556	21155756	656290
585	72974	chr1	249250621	30483	33424	chr12	136387465	-	124334042	124337182	160184

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.