Schema for Primate Cons - Primate Basewise Conservation by PhyloP
Database: hg19    Primary Table: phyloP46wayPrimates    Row Count: 2,809,934
Format description: Wiggle track values to display as y-values (first 6 fields are bed6)
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 10917int(10) unsigned Start position in chromosome
chromEnd 11941int(10) unsigned End position in chromosome
name chr1.0varchar(255) Name of item
span 1int(10) unsigned each value spans this many bases
count 1024int(10) unsigned number of values in this block
offset 0int(10) unsigned offset in File to fetch data
file /gbdb/hg19/multiz46way/phyl...varchar(255) path name to data file, one byte per value
lowerLimit -2.525double lowest data value in this block
dataRange 2.796double lowerLimit + dataRange = upperLimit
validCount 1024int(10) unsigned number of valid data values in this block
sumData -58.49double sum of the data points, for average and stddev calc
sumSquares 301.144double sum of data points squared, for stddev calc
Sample Rows
binchromchromStartchromEndnamespancountoffsetfilelowerLimitdataRangevalidCountsumDatasumSquares
585chr11091711941chr1.0110240/gbdb/hg19/multiz46way/phyloP46wayPrimates.wib-2.5252.7961024-58.49301.144
585chr11194112965chr1.1110241024/gbdb/hg19/multiz46way/phyloP46wayPrimates.wib-3.914.1991024-40.509311.968
585chr11296513989chr1.2110242048/gbdb/hg19/multiz46way/phyloP46wayPrimates.wib-3.7353.9191024-41.118307.183
585chr11398915013chr1.3110243072/gbdb/hg19/multiz46way/phyloP46wayPrimates.wib-3.5943.778102450.895189.576
585chr11501316037chr1.4110244096/gbdb/hg19/multiz46way/phyloP46wayPrimates.wib-3.1733.357102418.93214.706
585chr11603717061chr1.5110245120/gbdb/hg19/multiz46way/phyloP46wayPrimates.wib-3.6663.85102445.495188.234
585chr11706118085chr1.6110246144/gbdb/hg19/multiz46way/phyloP46wayPrimates.wib-1.4991.683102486.199132.37
585chr11808519109chr1.7110247168/gbdb/hg19/multiz46way/phyloP46wayPrimates.wib-2.8193.003102434.609195.032
585chr11910920133chr1.8110248192/gbdb/hg19/multiz46way/phyloP46wayPrimates.wib-3.0993.283102438.196194.668
585chr12013321157chr1.9110249216/gbdb/hg19/multiz46way/phyloP46wayPrimates.wib-3.2143.39810247.408231.051

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.