Schema for RNA-seq BT474 - Burge Lab RNA-seq 32mer Reads from BT474 Breast Tumour Cell Line

Database: hg19 Primary Table: burgeRnaSeqGemMapperAlignBT474 Row Count: 11,218,204
Format description: Browser extensible data

field	example	SQL type	description
`bin`	585	`smallint(5) unsigned`	Indexing field to speed chromosome range queries.
`chrom`	chr1	`varchar(255)`	Reference sequence chromosome or scaffold
`chromStart`	14924	`int(10) unsigned`	Start position in chromosome
`chromEnd`	14956	`int(10) unsigned`	End position in chromosome
`name`	GSM325484_HCT204_bt474__135...	`varchar(255)`	Name of item
`score`	1000	`int(10) unsigned`	Score from 0-1000
`strand`	-	`char(1)`	+ or -
`thickStart`	0	`int(10) unsigned`	Start of where display should be thick (start codon)
`thickEnd`	0	`int(10) unsigned`	End of where display should be thick (stop codon)
`reserved`	0	`int(10) unsigned`	Used as itemRgb as of 2004-11-22
`blockCount`	1	`int(10) unsigned`	Number of blocks
`blockSizes`	32,	`longblob`	Comma separated list of block sizes
`chromStarts`	0,	`longblob`	Start positions relative to chromStart

bin	chrom	chromStart	chromEnd	name	score	strand	blockCount	blockSizes	chromStarts
585	chr1	14924	14956	GSM325484_HCT204_bt474__13591929_chr1_14925_14956	1000	-	1	32,	0,
585	chr1	14926	14958	GSM325484_HCT204_bt474__14675976_chr1_14927_14958	1000	-	1	32,	0,
585	chr1	14929	14961	GSM325484_HCT204_bt474__17041182_chr1_14930_14961	1000	-	1	32,	0,
585	chr1	14931	14963	GSM325484_HCT204_bt474__9097738_chr1_14932_14963	1000	-	1	32,	0,
585	chr1	14935	14967	GSM325484_HCT204_bt474__15917430_chr1_14936_14967	1000	+	1	32,	0,
585	chr1	16071	16103	GSM325484_HCT204_bt474__1237298_chr1_16072_16103	1000	+	1	32,	0,
585	chr1	16074	16106	GSM325484_HCT204_bt474__16384678_chr1_16075_16106	1000	-	1	32,	0,
585	chr1	16076	16108	GSM325484_HCT204_bt474__15454007_chr1_16077_16108	1000	+	1	32,	0,
585	chr1	16077	16109	GSM325484_HCT204_bt474__12205476_chr1_16078_16109	1000	+	1	32,	0,
585	chr1	16079	16111	GSM325484_HCT204_bt474__13915937_chr1_16080_16111	1000	+	1	32,	0,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.