Schema for RNA-seq Lymph Node - Burge Lab RNA-seq 32mer Reads from Lymph Node

Database: hg19 Primary Table: burgeRnaSeqGemMapperAlignLymphNode Row Count: 16,221,077
Format description: Browser extensible data

field	example	SQL type	description
`bin`	585	`smallint(5) unsigned`	Indexing field to speed chromosome range queries.
`chrom`	chr1	`varchar(255)`	Reference sequence chromosome or scaffold
`chromStart`	14914	`int(10) unsigned`	Start position in chromosome
`chromEnd`	14946	`int(10) unsigned`	End position in chromosome
`name`	GSM325483_lymphNode_hg18_21...	`varchar(255)`	Name of item
`score`	1000	`int(10) unsigned`	Score from 0-1000
`strand`	+	`char(1)`	+ or -
`thickStart`	0	`int(10) unsigned`	Start of where display should be thick (start codon)
`thickEnd`	0	`int(10) unsigned`	End of where display should be thick (stop codon)
`reserved`	0	`int(10) unsigned`	Used as itemRgb as of 2004-11-22
`blockCount`	1	`int(10) unsigned`	Number of blocks
`blockSizes`	32,	`longblob`	Comma separated list of block sizes
`chromStarts`	0,	`longblob`	Start positions relative to chromStart

bin	chrom	chromStart	chromEnd	name	score	strand	blockCount	blockSizes	chromStarts
585	chr1	14914	14946	GSM325483_lymphNode_hg18_21363753_chr1_14915_14946	1000	+	1	32,	0,
585	chr1	14923	14955	GSM325483_lymphNode_hg18_8534419_chr1_14924_14955	1000	-	1	32,	0,
585	chr1	14923	14955	GSM325483_lymphNode_hg18_9096037_chr1_14924_14955	1000	-	1	32,	0,
585	chr1	14926	14958	GSM325483_lymphNode_hg18_4246747_chr1_14927_14958	1000	-	1	32,	0,
585	chr1	14926	14958	GSM325483_lymphNode_hg18_25638663_chr1_14927_14958	1000	-	1	32,	0,
585	chr1	14934	14966	GSM325483_lymphNode_hg18_6181093_chr1_14935_14966	1000	-	1	32,	0,
585	chr1	16071	16103	GSM325483_lymphNode_hg18_22381145_chr1_16072_16103	1000	+	1	32,	0,
585	chr1	16073	16105	GSM325483_lymphNode_hg18_3326592_chr1_16074_16105	1000	+	1	32,	0,
585	chr1	16075	16107	GSM325483_lymphNode_hg18_10288607_chr1_16076_16107	1000	+	1	32,	0,
585	chr1	16075	16107	GSM325483_lymphNode_hg18_18525350_chr1_16076_16107	1000	+	1	32,	0,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.