Schema for bioCycPathway
Database: hg19    Primary Table: bioCycPathway    Row Count: 1,916
Format description: BioCyc Pathway to Known Gene cross reference
fieldexampleSQL type info description
kgID uc001kpr.2varchar(40) values Known Gene ID
geneID GOT1varchar(40) values Gene (RefSeq) ID
mapID ASPASN-PWYvarchar(40) values BioCyc pathway map ID
Connected Tables and Joining Fields
      hg19.ccdsKgMap.geneId (via bioCycPathway.kgID)
      hg19.ceBlastTab.query (via bioCycPathway.kgID)
      hg19.dmBlastTab.query (via bioCycPathway.kgID)
      hg19.drBlastTab.query (via bioCycPathway.kgID)
      hg19.foldUtr3.name (via bioCycPathway.kgID)
      hg19.foldUtr5.name (via bioCycPathway.kgID)
      hg19.gnfAtlas2Distance.query (via bioCycPathway.kgID)
      hg19.gnfAtlas2Distance.target (via bioCycPathway.kgID)
      hg19.humanHprdP2P.query (via bioCycPathway.kgID)
      hg19.humanHprdP2P.target (via bioCycPathway.kgID)
      hg19.humanVidalP2P.query (via bioCycPathway.kgID)
      hg19.humanVidalP2P.target (via bioCycPathway.kgID)
      hg19.humanWankerP2P.query (via bioCycPathway.kgID)
      hg19.humanWankerP2P.target (via bioCycPathway.kgID)
      hg19.keggPathway.kgID (via bioCycPathway.kgID)
      hg19.kg4ToKg5.newId (via bioCycPathway.kgID)
      hg19.kgAlias.kgID (via bioCycPathway.kgID)
      hg19.kgColor.kgID (via bioCycPathway.kgID)
      hg19.kgProtAlias.kgID (via bioCycPathway.kgID)
      hg19.kgProtMap2.qName (via bioCycPathway.kgID)
      hg19.kgSpAlias.kgID (via bioCycPathway.kgID)
      hg19.kgTargetAli.qName (via bioCycPathway.kgID)
      hg19.kgTxInfo.name (via bioCycPathway.kgID)
      hg19.kgXref.kgID (via bioCycPathway.kgID)
      hg19.knownBlastTab.query (via bioCycPathway.kgID)
      hg19.knownBlastTab.target (via bioCycPathway.kgID)
      hg19.knownCanonical.protein (via bioCycPathway.kgID)
      hg19.knownCanonical.transcript (via bioCycPathway.kgID)
      hg19.knownGene.name (via bioCycPathway.kgID)
      hg19.knownGeneMrna.name (via bioCycPathway.kgID)
      hg19.knownGenePep.name (via bioCycPathway.kgID)
      hg19.knownIsoforms.transcript (via bioCycPathway.kgID)
      hg19.knownToAllenBrain.name (via bioCycPathway.kgID)
      hg19.knownToEnsembl.name (via bioCycPathway.kgID)
      hg19.knownToGnfAtlas2.name (via bioCycPathway.kgID)
      hg19.knownToHprd.name (via bioCycPathway.kgID)
      hg19.knownToLocusLink.name (via bioCycPathway.kgID)
      hg19.knownToPfam.name (via bioCycPathway.kgID)
      hg19.knownToRefSeq.name (via bioCycPathway.kgID)
      hg19.knownToSuper.gene (via bioCycPathway.kgID)
      hg19.knownToTreefam.name (via bioCycPathway.kgID)
      hg19.knownToU133.name (via bioCycPathway.kgID)
      hg19.knownToVisiGene.name (via bioCycPathway.kgID)
      hg19.mmBlastTab.query (via bioCycPathway.kgID)
      hg19.rnBlastTab.query (via bioCycPathway.kgID)
      hg19.scBlastTab.query (via bioCycPathway.kgID)
      hg19.bioCycMapDesc.mapID (via bioCycPathway.mapID)
Sample Rows
kgIDgeneIDmapID
uc001kpr.2GOT1ASPASN-PWY
uc002eof.1GOT2ASPASN-PWY
uc011lbj.1GOT1L1ASPASN-PWY
uc001ntf.3ASRGL1ASPASN-PWY
uc001yop.1ASPGASPASN-PWY
uc001rgd.3BCAT1BRANCHED-CHAIN-AA-SYN-PWY
uc002pkr.2BCAT2BRANCHED-CHAIN-AA-SYN-PWY
uc002nam.2ILVBLBRANCHED-CHAIN-AA-SYN-PWY
uc001tvg.2SDSBRANCHED-CHAIN-AA-SYN-PWY
uc001tvi.2SDSLBRANCHED-CHAIN-AA-SYN-PWY

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.