Schema for ceBlastTab
Database: hg19    Primary Table: ceBlastTab    Row Count: 4,968
Format description: Tab-delimited blast output file
fieldexampleSQL type info description
query uc003trd.2varchar(255) values Name of sequence in this assembly (query)
target C05D11.10varchar(255) values Name of sequence in other assembly (target)
identity 30.7float range Percent identity
aliLength 114int(10) unsigned range Length of alignment
mismatch 70int(10) unsigned range Number of mismatches
gapOpen 3int(10) unsigned range Number of gap openings
qStart 1int(10) unsigned range Start in query (0 based)
qEnd 107int(10) unsigned range End in query (non-inclusive)
tStart 4int(10) unsigned range Start in target (0 based)
tEnd 117int(10) unsigned range End in target (non-inclusive)
eValue 0.000000062double range Expectation value
bitScore 52.37double range Bit score
Connected Tables and Joining Fields
      hg19.bioCycPathway.kgID (via ceBlastTab.query)
      hg19.ccdsKgMap.geneId (via ceBlastTab.query)
      hg19.dmBlastTab.query (via ceBlastTab.query)
      hg19.drBlastTab.query (via ceBlastTab.query)
      hg19.foldUtr3.name (via ceBlastTab.query)
      hg19.foldUtr5.name (via ceBlastTab.query)
      hg19.gnfAtlas2Distance.query (via ceBlastTab.query)
      hg19.gnfAtlas2Distance.target (via ceBlastTab.query)
      hg19.humanHprdP2P.query (via ceBlastTab.query)
      hg19.humanHprdP2P.target (via ceBlastTab.query)
      hg19.humanVidalP2P.query (via ceBlastTab.query)
      hg19.humanVidalP2P.target (via ceBlastTab.query)
      hg19.humanWankerP2P.query (via ceBlastTab.query)
      hg19.humanWankerP2P.target (via ceBlastTab.query)
      hg19.keggPathway.kgID (via ceBlastTab.query)
      hg19.kg4ToKg5.newId (via ceBlastTab.query)
      hg19.kgAlias.kgID (via ceBlastTab.query)
      hg19.kgColor.kgID (via ceBlastTab.query)
      hg19.kgProtAlias.kgID (via ceBlastTab.query)
      hg19.kgProtMap2.qName (via ceBlastTab.query)
      hg19.kgSpAlias.kgID (via ceBlastTab.query)
      hg19.kgTargetAli.qName (via ceBlastTab.query)
      hg19.kgTxInfo.name (via ceBlastTab.query)
      hg19.kgXref.kgID (via ceBlastTab.query)
      hg19.knownBlastTab.query (via ceBlastTab.query)
      hg19.knownBlastTab.target (via ceBlastTab.query)
      hg19.knownCanonical.protein (via ceBlastTab.query)
      hg19.knownCanonical.transcript (via ceBlastTab.query)
      hg19.knownGene.name (via ceBlastTab.query)
      hg19.knownGeneMrna.name (via ceBlastTab.query)
      hg19.knownGenePep.name (via ceBlastTab.query)
      hg19.knownIsoforms.transcript (via ceBlastTab.query)
      hg19.knownToAllenBrain.name (via ceBlastTab.query)
      hg19.knownToEnsembl.name (via ceBlastTab.query)
      hg19.knownToGnfAtlas2.name (via ceBlastTab.query)
      hg19.knownToHprd.name (via ceBlastTab.query)
      hg19.knownToLocusLink.name (via ceBlastTab.query)
      hg19.knownToPfam.name (via ceBlastTab.query)
      hg19.knownToRefSeq.name (via ceBlastTab.query)
      hg19.knownToSuper.gene (via ceBlastTab.query)
      hg19.knownToTreefam.name (via ceBlastTab.query)
      hg19.knownToU133.name (via ceBlastTab.query)
      hg19.knownToVisiGene.name (via ceBlastTab.query)
      hg19.mmBlastTab.query (via ceBlastTab.query)
      hg19.rnBlastTab.query (via ceBlastTab.query)
      hg19.scBlastTab.query (via ceBlastTab.query)
Sample Rows
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
uc003trd.2C05D11.1030.7114703110741170.00000006252.37
uc003uid.2ZC506.4b39.568674431630834338903e-178622.5
uc010fpr.2Y57G11A.325224130722236522480.00000000002567.4
uc010fox.2R10E4.2a57.5417966258235772535e-48188
uc003tqg.2F32D8.664.1867900670672.1e-1886.66
uc003szf.2B0250.554.5829513224233542996.1e-86313.9
uc010fot.1W04E12.826.6230817913215487193162.8e-23107.1
uc003syn.1C07H6.765.12862621752601472303e-26115.2
uc003szd.1M142.473.6876191181256661425.9e-25111.7
uc003sxu.2K08H2.632.1213781235172421700.00000000000001475.48

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.