Schema for knownGenePep
Database: hg19    Primary Table: knownGenePep    Row Count: 62,378
Format description: A predicted peptide - linked to a predicted gene.
fieldexampleSQL type info description
name uc010nxq.1varchar(255) values Name of gene - same as in genePred
seq MSESINFSHNLGQLLSPPRCVVMPGMP...longblob   Peptide sequence
Connected Tables and Joining Fields
      hg19.bioCycPathway.kgID (via knownGenePep.name)
      hg19.ccdsKgMap.geneId (via knownGenePep.name)
      hg19.ceBlastTab.query (via knownGenePep.name)
      hg19.dmBlastTab.query (via knownGenePep.name)
      hg19.drBlastTab.query (via knownGenePep.name)
      hg19.foldUtr3.name (via knownGenePep.name)
      hg19.foldUtr5.name (via knownGenePep.name)
      hg19.gnfAtlas2Distance.query (via knownGenePep.name)
      hg19.gnfAtlas2Distance.target (via knownGenePep.name)
      hg19.humanHprdP2P.query (via knownGenePep.name)
      hg19.humanHprdP2P.target (via knownGenePep.name)
      hg19.humanVidalP2P.query (via knownGenePep.name)
      hg19.humanVidalP2P.target (via knownGenePep.name)
      hg19.humanWankerP2P.query (via knownGenePep.name)
      hg19.humanWankerP2P.target (via knownGenePep.name)
      hg19.keggPathway.kgID (via knownGenePep.name)
      hg19.kg4ToKg5.newId (via knownGenePep.name)
      hg19.kgAlias.kgID (via knownGenePep.name)
      hg19.kgColor.kgID (via knownGenePep.name)
      hg19.kgProtAlias.kgID (via knownGenePep.name)
      hg19.kgProtMap2.qName (via knownGenePep.name)
      hg19.kgSpAlias.kgID (via knownGenePep.name)
      hg19.kgTargetAli.qName (via knownGenePep.name)
      hg19.kgTxInfo.name (via knownGenePep.name)
      hg19.kgXref.kgID (via knownGenePep.name)
      hg19.knownBlastTab.query (via knownGenePep.name)
      hg19.knownBlastTab.target (via knownGenePep.name)
      hg19.knownCanonical.protein (via knownGenePep.name)
      hg19.knownCanonical.transcript (via knownGenePep.name)
      hg19.knownGene.name (via knownGenePep.name)
      hg19.knownGeneMrna.name (via knownGenePep.name)
      hg19.knownIsoforms.transcript (via knownGenePep.name)
      hg19.knownToAllenBrain.name (via knownGenePep.name)
      hg19.knownToEnsembl.name (via knownGenePep.name)
      hg19.knownToGnfAtlas2.name (via knownGenePep.name)
      hg19.knownToHprd.name (via knownGenePep.name)
      hg19.knownToLocusLink.name (via knownGenePep.name)
      hg19.knownToPfam.name (via knownGenePep.name)
      hg19.knownToRefSeq.name (via knownGenePep.name)
      hg19.knownToSuper.gene (via knownGenePep.name)
      hg19.knownToTreefam.name (via knownGenePep.name)
      hg19.knownToU133.name (via knownGenePep.name)
      hg19.knownToVisiGene.name (via knownGenePep.name)
      hg19.mmBlastTab.query (via knownGenePep.name)
      hg19.rnBlastTab.query (via knownGenePep.name)
      hg19.scBlastTab.query (via knownGenePep.name)
Sample Rows
nameseq
uc010nxq.1MSESINFSHNLGQLLSPPRCVVMPGMPFPSIRSPELQKTTADLDHTLVSVPSVAESLHHPEITFLTAFCLPSFTRSRPLPDRQLHHCLALCPSFALPAGDGVCHGPGLQGSCYKGETQESVESRVLPG ...
uc001aal.1MVTEFIFLGLSDSQELQTFLFMLFFVFYGGIVFGNLLIVITVVSDSHLHSPMYFLLANLSLIDLSLSSVTAPKMITDFFSQRKVISFKGCLVQIFLLHFFGGSEMVILIAMGFDRYIAICKPLHYTTI ...
uc009vjk.2MLLPPGSLSRPRTFSSQPLQTKLMTHNGLFRPIPYVTAASADEATASQQPPQAQLHRYNGLFRPSSCLPAFSPGPELSQVDLTRPSSCFFAASPGPAPASWWPLQAQPLPPVGLCSPNVCLTADSSRP ...
uc001aau.2MLLPPGSLSRPRTFSSQPLQTKLMTHNGLFRPIPYVTAASADEATASQQPPQAQLHRYNGLFRPSSCLPAFSPGPELSQVDLTRPSSCFFAASPGPAPASWWPLQAQPLPPVGLCSPNVCLTADSSRP ...
uc010nxu.1MDGENHSVVSEFLFLGLTHSWEIQLLLLVFSSVLYVASITGNILIVFSVTTDPHLHSPMYFLLASLSFIDLGACSVTSPKMIYDLFRKRKVISFGGCIAQIFFIHVVGGVEMVLLIAMAFDRYVALCK ...
uc010nxv.1MDGENHSVVSEFLFLGLTHSWEIQLLLLVFSSVLYVASITGNILIVFSVTTDPHLHSPMYFLLASLSFIDLGACSVTSPKMIYDLFRKRKVISFGGCIAQIFFIHVVGGVEMVLLIAMAFDRYVALCK ...
uc001abe.3MAYLGPYPMSRQPPQMRLLPHNSLHRHSSIVTMASLDPAPASQPSLQALNFLKSTSPGPAHASLQPLQAQLLHLGGPSRPSLCLPSASTVPKSASQQILHAQHLPHCGPPKPSSQPFSSFYTPSSCHP ...
uc009vjm.2MAYLGPYPMSRQPPQMRLLPHNSLHRHSSIVTMASLDPAPASQPSLQALNFLKSTSPGPAHASLQPLQAQLLHLGGPSRPSLCLPSASTVPKSASQQILHAQHLPHCGPPKPSSQPFSSFYTPSSCHP ...
uc010nxx.1MWLVFHRPHPRPSWPLRAALGFGRRQSSLRCFPVLPSARPYVSANPTLRGGRLRQDPESETGVGDLPDPVTTLVLLHNRLPLAVTVGCLPSRCPTEKRAPPWQGLLHCLAVDVEVGQESEEKTERREV ...
uc001abv.1MSKGILQVHPPICDCPGCRISSPVNRGRLADKRTVALPAARNLKKERTPSFSASDGDSDGSGPTCGRRPGLKQEDGPHIRIMKRRVHTHWDVNISFREASCSQDGNLPTLISSVHRSRHLVMPEHQSR ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.