Schema for netSusScr2
Database: hg19    Primary Table: netSusScr2    Row Count: 3,822,588
Format description: Database representation of a net of alignments.
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
level 1int(10) unsigned Level of alignment
tName chr1varchar(255) Target chromosome
tStart 11707int(10) unsigned Start on target
tEnd 36884int(10) unsigned End on target
strand +char(1) Orientation of query. + or -
qName chr5varchar(255) Query chromosome
qStart 63220996int(10) unsigned Start on query
qEnd 63248923int(10) unsigned End on query
chainId 7774int(10) unsigned Associated chain Id with alignment details
ali 17091int(10) unsigned Bases in gap-free alignments
score 551182double Score - a number proportional to 100x matching bases
qOver -1int(11) Overlap with parent gap on query side. -1 for undefined
qFar -1int(11) Distance from parent gap on query side. -1 for undefined
qDup 22360int(11) Bases with two or more copies in query. -1 for undefined
type topvarchar(255) Syntenic type: gap/top/syn/nonsyn/inv
tN 0int(11) Unsequenced bases on target. -1 for undefined
qN 200int(11) Unsequenced bases on query. -1 for undefined
tR 6472int(11) RepeatMasker bases on target. -1 for undefined
qR 8978int(11) RepeatMasker bases on query. -1 for undefined
tNewR -1int(11) Lineage specific repeats on target. -1 for undefined
qNewR -1int(11) Lineage specific repeats on query. -1 for undefined
tOldR -1int(11) Bases of ancient repeats on target. -1 for undefined
qOldR -1int(11) Bases of ancient repeats on query. -1 for undefined
tTrf 270int(11) Bases of tandem repeats on target. -1 for undefined
qTrf 160int(11) Bases of tandem repeats on query. -1 for undefined
Connected Tables and Joining Fields
      hg19.chainSusScr2.id (via netSusScr2.chainId)
      hg19.chainSusScr2Link.chainId (via netSusScr2.chainId)
Sample Rows
binleveltNametStarttEndstrandqNameqStartqEndchainIdaliscoreqOverqFarqDuptypetNqNtRqRtNewRqNewRtOldRqOldRtTrfqTrf
5851chr11170736884+chr56322099663248923777417091551182-1-122360top020064728978-1-1-1-1270160
5852chr11209512178+chr56322138763223088000-1-1-1gap0000-1-1-1-100
5852chr11228612297+chr56322319663223196000-1-1-1gap0000-1-1-1-100
5852chr11234112353+chr56322324063223240000-1-1-1gap0000-1-1-1-100
5852chr11249712516+chr56322338463223384000-1-1-1gap0000-1-1-1-100
5852chr11259212602+chr56322345263223452000-1-1-1gap0000-1-1-1-100
5852chr11273612764+chr56322358563223585000-1-1-1gap0000-1-1-1-100
5852chr11283812856+chr56322365863223658000-1-1-1gap0000-1-1-1-100
5852chr11368413697+chr56322453363224533000-1-1-1gap0000-1-1-1-100
5852chr11427314314+chr56322509663225096000-1-1-1gap0000-1-1-1-100

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.