Schema for refLink
Database: hg19    Primary Table: refLink    Row Count: 305,914
Format description: Link together a refseq mRNA and other stuff
fieldexampleSQL type info description
name  varchar(255) values Name displayed in UI
product  varchar(255) values Name of protein product
mrnaAcc NR_026498varchar(255) values mRNA accession
protAcc  varchar(255) values protein accession
geneName 0int(10) unsigned range pointer to geneName table
prodName 0int(10) unsigned range pointer to prodName table
locusLinkId 0int(10) unsigned range Locus Link ID
omimId 0int(10) unsigned range OMIM ID
Connected Tables and Joining Fields
      hg19.gbCdnaInfo.geneName (via refLink.geneName)
      hg19.geneName.id (via refLink.geneName)
      hg19.keggPathway.locusID (via refLink.locusLinkId)
      hg19.knownToLocusLink.value (via refLink.locusLinkId)
      hg19.ccdsInfo.mrnaAcc (via refLink.mrnaAcc)
      hg19.gbCdnaInfo.acc (via refLink.mrnaAcc)
      hg19.gbSeq.acc (via refLink.mrnaAcc)
      hg19.gbStatus.acc (via refLink.mrnaAcc)
      hg19.imageClone.acc (via refLink.mrnaAcc)
      hg19.kgXref.refseq (via refLink.mrnaAcc)
      hg19.knownToRefSeq.value (via refLink.mrnaAcc)
      hg19.mrnaOrientInfo.name (via refLink.mrnaAcc)
      hg19.refFlat.name (via refLink.mrnaAcc)
      hg19.refGene.name (via refLink.mrnaAcc)
      hg19.refSeqAli.qName (via refLink.mrnaAcc)
      hg19.refSeqStatus.mrnaAcc (via refLink.mrnaAcc)
      hg19.refSeqSummary.mrnaAcc (via refLink.mrnaAcc)
      hg19.seq.acc (via refLink.mrnaAcc)
      hg19.kgAlias.alias (via refLink.name)
      hg19.kgSpAlias.alias (via refLink.name)
      hg19.kgXref.geneSymbol (via refLink.name)
      hg19.omimMorbidMap.geneSymbols (via refLink.name)
      hg19.refFlat.geneName (via refLink.name)
      hg19.omimGene.name (via refLink.omimId)
      hg19.omimGeneMap.omimId (via refLink.omimId)
      hg19.omimMorbidMap.omimId (via refLink.omimId)
      hg19.omimToKnownCanonical.omimId (via refLink.omimId)
      hg19.gbCdnaInfo.productName (via refLink.prodName)
      hg19.productName.id (via refLink.prodName)
      hg19.kgProtAlias.alias (via refLink.protAcc)
      hg19.kgSpAlias.alias (via refLink.protAcc)
      hg19.kgXref.protAcc (via refLink.protAcc)
      hg19.seq.acc (via refLink.protAcc)
Sample Rows
nameproductmrnaAccprotAccgeneNameprodNamelocusLinkIdomimId
NR_0264980000
NR_0253440000
NR_0258940000
NR_0251440000
NR_0264300000
NR_0253260000
NR_0259160000
NR_0255820000
NR_0251730000
NR_0253270000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.