Schema for rnBlastTab
Database: hg19    Primary Table: rnBlastTab    Row Count: 25,071
Format description: Tab-delimited blast output file
fieldexampleSQL type info description
query uc001aby.3varchar(255) values Name of sequence in this assembly (query)
target NM_001033897varchar(255) values Name of sequence in other assembly (target)
identity 74.07float range Percent identity
aliLength 509int(10) unsigned range Length of alignment
mismatch 121int(10) unsigned range Number of mismatches
gapOpen 1int(10) unsigned range Number of gap openings
qStart 29int(10) unsigned range Start in query (0 based)
qEnd 538int(10) unsigned range End in query (non-inclusive)
tStart 129int(10) unsigned range Start in target (0 based)
tEnd 631int(10) unsigned range End in target (non-inclusive)
eValue 0double range Expectation value
bitScore 763.1double range Bit score
Connected Tables and Joining Fields
      hg19.bioCycPathway.kgID (via rnBlastTab.query)
      hg19.ccdsKgMap.geneId (via rnBlastTab.query)
      hg19.ceBlastTab.query (via rnBlastTab.query)
      hg19.dmBlastTab.query (via rnBlastTab.query)
      hg19.drBlastTab.query (via rnBlastTab.query)
      hg19.foldUtr3.name (via rnBlastTab.query)
      hg19.foldUtr5.name (via rnBlastTab.query)
      hg19.gnfAtlas2Distance.query (via rnBlastTab.query)
      hg19.gnfAtlas2Distance.target (via rnBlastTab.query)
      hg19.humanHprdP2P.query (via rnBlastTab.query)
      hg19.humanHprdP2P.target (via rnBlastTab.query)
      hg19.humanVidalP2P.query (via rnBlastTab.query)
      hg19.humanVidalP2P.target (via rnBlastTab.query)
      hg19.humanWankerP2P.query (via rnBlastTab.query)
      hg19.humanWankerP2P.target (via rnBlastTab.query)
      hg19.keggPathway.kgID (via rnBlastTab.query)
      hg19.kg4ToKg5.newId (via rnBlastTab.query)
      hg19.kgAlias.kgID (via rnBlastTab.query)
      hg19.kgColor.kgID (via rnBlastTab.query)
      hg19.kgProtAlias.kgID (via rnBlastTab.query)
      hg19.kgProtMap2.qName (via rnBlastTab.query)
      hg19.kgSpAlias.kgID (via rnBlastTab.query)
      hg19.kgTargetAli.qName (via rnBlastTab.query)
      hg19.kgTxInfo.name (via rnBlastTab.query)
      hg19.kgXref.kgID (via rnBlastTab.query)
      hg19.knownBlastTab.query (via rnBlastTab.query)
      hg19.knownBlastTab.target (via rnBlastTab.query)
      hg19.knownCanonical.protein (via rnBlastTab.query)
      hg19.knownCanonical.transcript (via rnBlastTab.query)
      hg19.knownGene.name (via rnBlastTab.query)
      hg19.knownGeneMrna.name (via rnBlastTab.query)
      hg19.knownGenePep.name (via rnBlastTab.query)
      hg19.knownIsoforms.transcript (via rnBlastTab.query)
      hg19.knownToAllenBrain.name (via rnBlastTab.query)
      hg19.knownToEnsembl.name (via rnBlastTab.query)
      hg19.knownToGnfAtlas2.name (via rnBlastTab.query)
      hg19.knownToHprd.name (via rnBlastTab.query)
      hg19.knownToLocusLink.name (via rnBlastTab.query)
      hg19.knownToPfam.name (via rnBlastTab.query)
      hg19.knownToRefSeq.name (via rnBlastTab.query)
      hg19.knownToSuper.gene (via rnBlastTab.query)
      hg19.knownToTreefam.name (via rnBlastTab.query)
      hg19.knownToU133.name (via rnBlastTab.query)
      hg19.knownToVisiGene.name (via rnBlastTab.query)
      hg19.mmBlastTab.query (via rnBlastTab.query)
      hg19.scBlastTab.query (via rnBlastTab.query)
Sample Rows
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
uc001aby.3NM_00103389774.075091211295381296310763.1
uc001abz.3NM_00103389775.426021372135736316310910.2
uc009vjq.2NM_00103389774.796071412135741316310910.2
uc001aca.1NM_14567192.986272610627062501160.2
uc001acb.1NM_14567199.121141001141222365.3e-61228.4
uc010nya.1NM_14567199.121141001141222365.3e-61228.4
uc010nyb.1NM_14567110071000712753463.2e-37149.1
uc001aci.2NM_02436068150400015001506.3e-54205.3
uc010nyc.1NM_02436057.95176401017601501.5e-49191
uc001ack.1NM_17575474.6519133465155204550195902986.8

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.