Human uc003son.2 - UCSC Genome Browser v205

position/search: size: 37,972 bp.

click or drag mouse in base position track to zoom in

ncRNA Prediction and Mapping Tracks
Base Position	fRNAdb::RNAz	fRNAdb::EvoFold	fRNAdb::snoRNA	fRNAdb::rRNA
fRNAdb::tRNA	fRNAdb::piRNA	fRNAdb::snRNA	fRNAdb::Misc	fRNAdb::fly smallRNA
RNAz folds	antisense ChenJ NAR2004	snoSeeker	QRNA predictions	intronic ncRNAs
Sasaki and Hirose 150 ncRNA candidates	Jones and Eddy ncRNAs	RNPomics RederstorffM NAR2010

Misc Genomic Element Tracks
Indel-conserved segments	Ultra Conserved 17way	Transposon Free Region	Histone Enrichment	Fragile Sites
Enhancer Candidates	Tissue specific enhancer candidates	PReMod CRMs	Alu	pseudo conservation
Lamina Associated Domain	predicted splice sites

miRNA-related Tracks
Known miRNAs	Predicted miRNAs	Known targets	Predicted targets	miRNA Atlas
fRNAdb::pre-miRNA	fRNAdb::mature-miRNA

ncRNA Candidate Probe Tracks
Human Accelerated Region	Inverted Duplication	RNAmine	Rfam Seed mappable	Ultra Low Z score Region
miRRim	SelfChain RNAz EST	SelfChain RNAz Washietl	snoRNA	SynSeg
Ultra Conserved Region	Known Gene

Mapping and Sequencing Tracks
Chromosome Band	STS Markers	FISH Clones	Recomb Rate	Map Contigs
Assembly	Gap	Coverage	BAC End Pairs	Fosmid End Pairs
GC Percent	Short Match	Restr Enzymes

Phenotype and Disease Associations
GAD View	RGD Human QTL	RGD Rat QTL	MGI Mouse QTL

Genes and Gene Prediction Tracks
UCSC Genes	Old UCSC Genes	Alt Events	CCDS	RefSeq Genes
Other RefSeq	MGC Genes	ORFeome Clones	TransMap...	Vega Genes
Ensembl Genes	AceView Genes	SIB Genes	N-SCAN	CONTRAST
SGP Genes	Geneid Genes	Genscan Genes	Exoniphy	Augustus
RNA Genes	ACEScan	EvoFold	sno/miRNA	Pos Sel Genes

mRNA and EST Tracks
Human mRNAs	Spliced ESTs	Human ESTs	Other mRNAs	Other ESTs
UniGene	Gene Bounds	SIB Alt-Splicing	Poly(A)	CGAP SAGE
H-InvDB 6.0

Expression
Affy GNF1H	Affy HuEx 1.0	Affy U133	Affy U133Plus2	Affy U95
Agilent Array	Allen Brain	Bertone Yale TAR	GIS PET RNA	GNF Atlas 2
GNF Ratio	Illumina WG-6	Affy Txn...	Affy Transcript Cluster	Invi Ncode

Regulation
CpG Islands	EIO/JCVI NAS	Eponine TSS	FirstEF	GIS ChIP-PET
ORegAnno	SwitchGear TSS	TFBS Conserved	Vista Enhancers	7X Reg Potential
FOX2 CLIP-seq	LI/UCSD TAF1...	NKI Nuc Lamina...	Nucleosome Occupancy...	Uppsala ChIP...

Comparative Genomics
Conservation	28-Way Cons	28-Way Base Cons	28-Way Most Cons	17-Way Cons
17-Way Most Cons	Human Accelerated	Cons Indels MmCf	S. purpuratus Chain	S. purpuratus Net
Lancelet Chain	Lancelet Net	Lamprey Chain	Lamprey Net	Medaka Chain
Medaka Net	Stickleback Chain	Stickleback Net	Fugu Chain	Fugu Net
Tetraodon Chain	Tetraodon Net	Tetraodon Ecores	Zebrafish Chain	Zebrafish Net
X. tropicalis Chain	X. tropicalis Net	Zebra finch Chain	Zebra finch Net	Chicken Chain
Chicken Net	Lizard Chain	Lizard Net	Platypus Chain	Platypus Net
Opossum Chain	Opossum Net	Dog Chain	Dog Net	Cat Chain
Cat Net	Horse Chain	Horse Net	Cow Chain	Cow Net
Guinea Pig Chain	Guinea Pig Net	Rat Chain	Rat Net	Mouse Chain
Mouse Net	Marmoset Chain	Marmoset Net	Rhesus Chain	Rhesus Net
Orangutan Chain	Orangutan Net	Chimp Chain	Chimp Net

Variation and Repeats
SNPs (129)	SNPs (128)	SNPs (126)	SNP Arrays	HapMap SNPs
HapMap LD Phased	Tajima's D SNPs	Tajima's D	DGV Struct Var	HGSV Discordant
Segmental Dups	Structural Var	Exapted Repeats	RepeatMasker	RepMask 3.2.7
Interrupted Rpts	Intr Rpts 3.2.7	Simple Repeats	Microsatellite	Self Chain

Pilot ENCODE Regions and Genes
ENCODE Regions	Gencode Genes...	EGASP...	Pseudogenes	Known+Pred RNA
Vienna RNAz

Pilot ENCODE Transcription
Affy RNA...	BU First Exon	Riken CAGE	Riken Cage 2007	Stanf Promoter
Stanf RTPCR	Yale RNA...	Affy EC... [No data-chr7]

Pilot ENCODE Chromatin Immunoprecipitation
Affy ChIP...	LI/UCSD ChIP...	Sanger ChIP-chip...	Stanf ChIP...	UC Davis ChIP...
UT-Austin ChIP...	Uppsala ChIP...	Yale ChIP...

Pilot ENCODE Chromatin Structure
BU ORChID	Duke/NHGRI DNase	UNC FAIRE	UVa DNA Rep...	UW DNase...

Pilot ENCODE Comparative Genomics and Variation
36-Way TBA	NHGRI DIPs

Experimental Tracks
Retroposed Genes	Similar to Mitochondria	EST Clusters