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Cytogenetic band (Giemsa stain)

a.k.a. G-band, which is supposed to stain AT-rich region of chromosomes.

GC content

Computationally generated band that reflects GC% of chromosomes.

Repetitive element density

Computationally generated band that represents the number of repeatitive elements per 1Mb. The data source is UCSC Genome Browser Repetitive Sequence Region track.

Known gene density (number)

Computationally generated band that represents the number of known genes per 1Mb. The data source is UCSC Genome Browser Known Gene Track.

Known gene density (base coverage)

Computationally generated band that represents the nuber of bases belong to known gene exon/UTRs per 1Mb. The data source is UCSC Genome Browser Known Gene Track.

mRNA density (number)

Computationally generated band that represents the number of genome-mapped mRNAs per 1Mb. The data source is UCSC Genome Browser Human/Mouse/Rat mRNA Track.

mRNA density (base coverage)

Computationally generated band that represents the nuber of bases belong to genome-mapped mRNA regions per 1Mb. The data source is UCSC Genome Browser Human/Mouse/Rat mRNA Track.

EST density (number)

Computationally generated band that represents the number of genome-mapped ESTs per 1Mb. The data source is UCSC Genome Browser Human/Mouse/Rat EST Track.

EST density (base coverage)

Computationally generated band that represents the nuber of bases belong to genome-mapped EST regions per 1Mb. The data source is UCSC Genome Browser Human/Mouse/Rat EST Track.

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