CentroidFoldUp one level
CentroidFold based on a generalized centroid estimator is one of the most accurate tools for predicting RNA secondary structures. See the original paper for the details of the algorithm.
- Link to the original paper
- README for the software
- CentroidFold package contains three software: CentroidFold (RNA secondary structure prediction), CentroidAlifold (Common secondary structure prediction of RNAs) and CentroidHomfold (RNA secondary structure prediction with homologous sequences)
- Each directory contains figures (PDF format) in the paper as follows: single: secondary structure predictions from an RNA sequence aln : common secondary structure predictions aln-n : common secondary structure predictions of 2,4,6,8,10 sequences
- Help for Web Application
- CentroidFold lets you get a predicted secondary structure for a given RNA sequence and a predicted common secondary structure for a given multiple-alignment.
- Help Figures